MD09G1091200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016902
Physical Location & Seq
Forward (+)
6691902 .. 6694395
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1091200.v1.1.491

Sequence Viewer

Length: 432 bp
ATGGGCGGTGAAGATAGGTGGCAAGGCATTGCTCTAGCTCCAGTAAATACAGACAGAGAAGAGGAGCAATGGAGGAGCTTCAACAACTCAGTGAATGCAGTTTCTTTAGGTTTTGTAGCAACTGCTATTCTCATCTCAATGTTTCTTGTGATGGCTATTTTTGAGAGATTTTTCAGGCCCAGATCATCACAGCTGCCCACTTCAGCTCACACTACTACAACTACTACTCATTTGGATCTTCAGCCACAGATTACCTACAATGATTCCAAGCTTGATCACCACCACTCTCACAAAATGAGAATTTATGCCAGAGAAGTATCTGTGATGATGCCTGGGGAAGATATGCCTACCTTCATTGCACATCCTGCTCCTGCACCGTGTCTACCGGAGCGCATCGCTTGGCCTCTCCATCAAACACAAACCGTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.22

Weight (kDa)

6.21

Isoelectric Point (pI)

61.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016902)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44970
malus_domestica MD09G1091200.v1.1 MD17G1081100.v1.1
prunus_persica Prupe.3G233800_v2.0.a1
pyrus_communis pycom17g07940
rosa_chinensis RchiOBHm_Chr2g0162241
rosa_laevigata RLG00000021329
rosa_multiflora Rmu_sc0004020.1_g000026
rosa_roxburghii Rroxscaffold_2G00088230
rosa_rugosa Rorug02G0495300
rosa_samantha Rh2AG561800 Rh2BG574800 Rh2DG584800
rosa_wichuraiana Rw2G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 382
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 2 cut(s) 186, 224
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 5 cut(s) 38, 78, 193, 206, 271
AluI AGCT 5 cut(s) 38, 78, 193, 206, 271
AlwI GGATC 1 cut(s) 243
AoxI GGCC 2 cut(s) 176, 401
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 300
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 20, 269
BbvI GCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 145, 417
BciT130I CCWGG 1 cut(s) 333
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 2 cut(s) 318, 402
BpmI CTGGAG 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 332
BsaWI WCCGGW 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 3 cut(s) 27, 74, 354
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 361
BseMI GCAATG 3 cut(s) 27, 74, 354
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 2 cut(s) 77, 88
BseXI GCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 2 cut(s) 178, 403
BsiSI CCGG 1 cut(s) 386
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 2 cut(s) 178, 403
Bsp143I GATC 3 cut(s) 182, 235, 274
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 178, 403
BspCNI CTCAG 1 cut(s) 101
BspPI GGATC 1 cut(s) 243
BsrDI GCAATG 3 cut(s) 27, 74, 354
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 3 cut(s) 182, 235, 274
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 378, 424
Bst6I CTCTTC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 3 cut(s) 185, 238, 277
BstMBI GATC 3 cut(s) 182, 235, 274
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 2 cut(s) 178, 403
BtgZI GCGATG 1 cut(s) 379
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 96
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 177
CviJI RGCY 9 cut(s) 38, 78, 155, 178, 193, 206, 244, 271, 403
CviKI_1 RGCY 9 cut(s) 38, 78, 155, 178, 193, 206, 244, 271, 403
DdeI CTNAG 1 cut(s) 88
DpnI GATC 3 cut(s) 184, 237, 276
DpnII GATC 3 cut(s) 182, 235, 274
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco57I CTGAAG 2 cut(s) 186, 224
EcoRII CCWGG 1 cut(s) 331
FaiI YATR 2 cut(s) 306, 344
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 392
GluI GCNGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 2 cut(s) 178, 403
HapII CCGG 1 cut(s) 386
HhaI GCGC 1 cut(s) 393
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 386
HphI GGTGA 2 cut(s) 20, 269
Hpy166II GTNNAC 1 cut(s) 383
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 2 cut(s) 378, 424
HpyCH4V TGCA 3 cut(s) 98, 359, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 88
HspAI GCGC 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 182, 235, 274
LmnI GCTCC 5 cut(s) 43, 64, 75, 373, 388
LpnPI CCDG 9 cut(s) 54, 160, 193, 318, 322, 345, 378, 384, 399
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 2 cut(s) 318, 402
MaeI CTAG 1 cut(s) 35
MalI GATC 3 cut(s) 184, 237, 276
MboI GATC 3 cut(s) 182, 235, 274
MboII GAAGA 4 cut(s) 23, 71, 230, 350
MflI RGATCY 1 cut(s) 235
MluCI AATT 1 cut(s) 300
MnlI CCTC 3 cut(s) 55, 66, 414
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeII GATC 3 cut(s) 182, 235, 274
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspPI GGNCC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 137
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 3 cut(s) 182, 235, 274
Sau96I GGNCC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 333
SetI ASST 9 cut(s) 20, 40, 80, 112, 195, 208, 257, 273, 353
SfaNI GCATC 2 cut(s) 318, 402
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 378, 424
TasI AATT 1 cut(s) 300
TfiI GAWTC 1 cut(s) 263
TscAI CASTG 1 cut(s) 96
TseI GCWGC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 343
TspRI CASTG 1 cut(s) 96
XapI RAATTY 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 382
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.