FvH4_6g45180

Cytokinin hydroxylase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
34713939 .. 34717526
3588 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45180.t2

Sequence Viewer

Length: 1551 bp
ATGGCCCCGGTGGCTCTAACAATTCTGTTGGTGATATTCCTTGGTTTACTGGTTAGAATTGCTTACGACACTCTCTCATGTTACTGGTTAACCCCCAGACGCATCAAGAAGATCATGGAGAAGCAAGGAGTGCGTGGCCCGAAACCCAGTTTTCTGATCGGAAACATCCTCGACATGGCCTCCCTTGTCTCCAAGTCTACTTCTCAAGACATGCACACCATCGATCATGACATTGTTGGCCGCCTGCTTCCCCATTATCTCGCCTGGTCTAAAACATATGGGAAAAGATTCATATATTGGAATGGAACTGAGCCCCGGATGTGTTTGACGGAGACTGATTTGATCAAGGAGCTTCTGTCCAAGTACAGCACCATTTCTGGAAAATCATGGCAGCAACAACAGGGCTCTAAGCATTTTATTGGCCGTGGATTACTAATGGCTAACGGTGACGACTGGTATCACCAGCGTCACATCGTTGCACCAGCTTTCATGGGAGATAAACTCAAGAGCTATGCGGGATACATGGTGGAATGCACTAAGGAGATGCTCCATTCACTTCAAACAGAGATGGAATCGGGGCAAGGCGAGTTCGAGATTGGCCAGTACATGACTAGACTCACTGCCGATATAATTTCCCGGACGGAGTTCGACAGCAGCTACGAGAAGGGAAAACAGATTTACCGGCTACTCACCCTTTTGCAGAAGCAATGTGCTGAAGCAAGCAAGCACCTTTGCGTTCCCGGAAGCCGGTTTTTCCCAAGTAAATATAATAGAGAAATAAAATCTCTGAAGATGGAGGTGGAGAGGCTGCTGATGGAGATTATACAGAGCCGGAAAGATTGCGTGGAGATCGGTCGGAACAACTCTTACGGGAACGATTTGCTAGGGATGTTGCTAAATGAGATGCAGAAAAAGAGAGGGAATGGTTTTAGCTTAAATTTGCAGCTGATCATGGATGAATGCAAGACATTCTTCTTTGCAGGACATGAAACCACTGCCCTCTTGCTCACTTGGACCGTCATGTTATTAGCCAGCAACCCATCTTGGCAAGATAAGGTTCGAGCTGAAGTGAAGCAAGTCTGCAATGGTGAAACTCCCTCCGTTGATCATCTATCTAAACTCACCTCGTTAAACATGGTAATCAATGAATCCCTGAGACTGTATCCACCAGCAACTGTTCTACCTCGAATGGCTTTCGAAGACATCAAACTTGGTGACCTTCACATTCCAAAGGGGCTATCAATATGGATTCCAGTCCTCGCCATTCACCACAGTAAAGAACTATGGGGTAGTGATGCAAATGAGTTTAACCCTGAGAGGTTTGCATCCAAGTCATTCACACCAGGAAGGTTCATTCCTTTTGCTGCTGGTCCTCGAAATTGCATAGGTCAGTCTTTTGCTATCATGGAAGCTAAGATCATATTGGCTATGCTAATCTCGCGGTTTAGCTTCACCATTGCGCCAAGTTATCGCCACGCTCCAGTTGTTGTCCTCACCATAAAGCCTAAGTATGGGGTTCAAGTATGCTTGAAACCAATTGCGTGCAATTGA

Protein Analysis

517

Amino Acids

58.58

Weight (kDa)

9.15

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 383 7.8e-86 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014039)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 197
AccII CGCG 1 cut(s) 1441
AciI CCGC 3 cut(s) 241, 515, 1441
AcoI YGGCCR 3 cut(s) 238, 421, 598
AcsI RAATTY 1 cut(s) 937
AcuI CTGAAG 3 cut(s) 735, 809, 1086
AfaI GTAC 2 cut(s) 365, 605
AfiI CCNNNNNNNGG 3 cut(s) 175, 747, 1511
AgsI TTSAA 3 cut(s) 560, 1520, 1531
AjnI CCWGG 2 cut(s) 263, 1342
AluBI AGCT 9 cut(s) 352, 485, 510, 657, 933, 946, 1064, 1412, 1449
AluI AGCT 9 cut(s) 352, 485, 510, 657, 933, 946, 1064, 1412, 1449
Alw26I GTCTC 3 cut(s) 193, 326, 1150
AlwNI CAGNNNCTG 1 cut(s) 1175
AoxI GGCC 6 cut(s) 3, 136, 177, 238, 421, 598
ApeKI GCWGC 5 cut(s) 391, 654, 808, 943, 1364
ApoI RAATTY 1 cut(s) 937
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 1 cut(s) 1462
AspS9I GGNCC 4 cut(s) 4, 137, 1014, 1370
AsuC2I CCSGG 4 cut(s) 8, 316, 637, 741
AsuII TTCGAA 1 cut(s) 1197
AvaII GGWCC 2 cut(s) 1014, 1370
BalI TGGCCA 1 cut(s) 600
BanII GRGCYC 2 cut(s) 315, 407
BbsI GAAGAC 1 cut(s) 1206
BbvI GCAGC 5 cut(s) 403, 666, 795, 955, 1351
BccI CCATC 5 cut(s) 227, 562, 787, 808, 1048
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 2 cut(s) 265, 1344
BciVI GTATCC 2 cut(s) 512, 1173
BclI TGATCA 3 cut(s) 342, 948, 1105
BcnI CCSGG 4 cut(s) 8, 316, 637, 741
BcoDI GTCTC 3 cut(s) 193, 326, 1150
BfaI CTAG 2 cut(s) 612, 884
BfuI GTATCC 2 cut(s) 512, 1173
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 6 cut(s) 241, 392, 655, 809, 944, 1365
BlsI GCNGC 6 cut(s) 242, 393, 656, 810, 945, 1366
Bme1390I CCNGG 6 cut(s) 8, 265, 316, 637, 741, 1344
Bme18I GGWCC 2 cut(s) 1014, 1370
BmgT120I GGNCC 4 cut(s) 4, 137, 1014, 1370
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 6 cut(s) 8, 265, 316, 637, 741, 1344
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 5 cut(s) 111, 534, 894, 1285, 1334
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 1206
BplI GAGNNNNNCTC 2 cut(s) 486, 518
BpmI CTGGAG 1 cut(s) 1464
Bpu14I TTCGAA 1 cut(s) 1197
BpuEI CTTGAG 2 cut(s) 189, 488
BpuMI CCSGG 4 cut(s) 8, 316, 637, 741
Bsa29I ATCGAT 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 6, 40, 314, 424
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 341, 371
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 747, 1511
Bse118I RCCGGY 2 cut(s) 681, 747
Bse1I ACTGG 7 cut(s) 54, 89, 147, 458, 601, 1253, 1481
Bse3DI GCAATG 3 cut(s) 713, 1090, 1455
BseBI CCWGG 2 cut(s) 265, 1344
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 4 cut(s) 6, 40, 314, 424
BseGI GGATG 5 cut(s) 165, 324, 894, 961, 1325
BseLI CCNNNNNNNGG 3 cut(s) 175, 747, 1511
BseMI GCAATG 3 cut(s) 713, 1090, 1455
BseMII CTCAG 3 cut(s) 300, 1145, 1305
BseNI ACTGG 7 cut(s) 54, 89, 147, 458, 601, 1253, 1481
BseXI GCAGC 5 cut(s) 403, 666, 795, 955, 1351
Bsh1236I CGCG 1 cut(s) 1441
Bsh1285I CGRYCG 1 cut(s) 856
BshFI GGCC 6 cut(s) 5, 138, 179, 240, 423, 600
BshVI ATCGAT 1 cut(s) 222
BsiEI CGRYCG 1 cut(s) 856
BsiSI CCGG 7 cut(s) 8, 316, 637, 682, 741, 748, 832
BslI CCNNNNNNNGG 3 cut(s) 175, 747, 1511
BsmAI GTCTC 3 cut(s) 193, 326, 1150
BsmI GAATGC 2 cut(s) 536, 965
BsnI GGCC 6 cut(s) 5, 138, 179, 240, 423, 600
Bsp119I TTCGAA 1 cut(s) 1197
Bsp1286I GDGCHC 2 cut(s) 315, 407
Bsp143I GATC 8 cut(s) 111, 156, 223, 342, 849, 948, 1105, 1416
BspACI CCGC 3 cut(s) 241, 515, 1441
BspANI GGCC 6 cut(s) 5, 138, 179, 240, 423, 600
BspCNI CTCAG 3 cut(s) 301, 1146, 1306
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 1 cut(s) 1441
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 1197
BsrDI GCAATG 3 cut(s) 713, 1090, 1455
BsrFI RCCGGY 2 cut(s) 681, 747
BsrI ACTGG 7 cut(s) 54, 89, 147, 458, 601, 1253, 1481
BssAI RCCGGY 2 cut(s) 681, 747
BssECI CCNNGG 4 cut(s) 6, 40, 314, 424
BssMI GATC 8 cut(s) 111, 156, 223, 342, 849, 948, 1105, 1416
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 2 cut(s) 265, 1344
Bst4CI ACNGT 5 cut(s) 446, 1018, 1161, 1177, 1274
BstAPI GCANNNNNTGC 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 1197
BstC8I GCNNGC 5 cut(s) 245, 721, 725, 1033, 1543
BstDEI CTNAG 7 cut(s) 309, 408, 537, 1154, 1314, 1413, 1506
BstDSI CCRYGG 1 cut(s) 424
BstEII GGTNACC 1 cut(s) 1214
BstF5I GGATG 5 cut(s) 165, 324, 894, 961, 1325
BstFNI CGCG 1 cut(s) 1441
BstHHI GCGC 1 cut(s) 1462
BstKTI GATC 8 cut(s) 114, 159, 226, 345, 852, 951, 1108, 1419
BstMAI GTCTC 3 cut(s) 193, 326, 1150
BstMBI GATC 8 cut(s) 111, 156, 223, 342, 849, 948, 1105, 1416
BstMCI CGRYCG 1 cut(s) 856
BstMWI GCNNNNNNNGC 3 cut(s) 11, 130, 1438
BstNI CCWGG 2 cut(s) 265, 1344
BstNSI RCATGY 1 cut(s) 214
BstPI GGTNACC 1 cut(s) 1214
BstSCI CCNGG 6 cut(s) 6, 263, 314, 635, 739, 1342
BstUI CGCG 1 cut(s) 1441
BstV1I GCAGC 5 cut(s) 403, 666, 795, 955, 1351
BstV2I GAAGAC 1 cut(s) 1206
Bsu15I ATCGAT 1 cut(s) 222
BsuI GTATCC 2 cut(s) 512, 1173
BsuRI GGCC 6 cut(s) 5, 138, 179, 240, 423, 600
BsuTUI ATCGAT 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 5 cut(s) 165, 324, 894, 961, 1325
BtsI GCAGTG 2 cut(s) 618, 993
BtsIMutI CAGTG 2 cut(s) 618, 993
Cac8I GCNNGC 5 cut(s) 245, 721, 725, 1033, 1543
CaiI CAGNNNCTG 1 cut(s) 1175
CciI TCATGA 1 cut(s) 226
CfoI GCGC 1 cut(s) 1462
Cfr10I RCCGGY 2 cut(s) 681, 747
Cfr13I GGNCC 4 cut(s) 4, 137, 1014, 1370
ClaI ATCGAT 1 cut(s) 222
CseI GACGC 2 cut(s) 108, 455
Csp6I GTAC 2 cut(s) 364, 604
CviQI GTAC 2 cut(s) 364, 604
DdeI CTNAG 7 cut(s) 309, 408, 537, 1154, 1314, 1413, 1506
DpnI GATC 8 cut(s) 113, 158, 225, 344, 851, 950, 1107, 1418
DpnII GATC 8 cut(s) 111, 156, 223, 342, 849, 948, 1105, 1416
EaeI YGGCCR 3 cut(s) 238, 421, 598
Eco130I CCWWGG 1 cut(s) 40
Eco24I GRGCYC 2 cut(s) 315, 407
Eco47I GGWCC 2 cut(s) 1014, 1370
Eco57I CTGAAG 3 cut(s) 735, 809, 1086
Eco91I GGTNACC 1 cut(s) 1214
EcoO65I GGTNACC 1 cut(s) 1214
EcoRII CCWGG 2 cut(s) 263, 1342
EcoT14I CCWWGG 1 cut(s) 40
EcoT38I GRGCYC 2 cut(s) 315, 407
ErhI CCWWGG 1 cut(s) 40
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FauI CCCGC 1 cut(s) 508
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 3 cut(s) 342, 948, 1105
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 6 cut(s) 241, 392, 655, 809, 944, 1365
FokI GGATG 5 cut(s) 152, 331, 901, 968, 1312
FriOI GRGCYC 2 cut(s) 315, 407
Fsp4HI GCNGC 6 cut(s) 241, 392, 655, 809, 944, 1365
FspBI CTAG 2 cut(s) 612, 884
GlaI GCGC 1 cut(s) 1461
GluI GCNGC 6 cut(s) 241, 392, 655, 809, 944, 1365
GsuI CTGGAG 1 cut(s) 1464
HaeIII GGCC 6 cut(s) 5, 138, 179, 240, 423, 600
HapII CCGG 7 cut(s) 8, 316, 637, 682, 741, 748, 832
HgaI GACGC 2 cut(s) 108, 455
HhaI GCGC 1 cut(s) 1462
Hin6I GCGC 1 cut(s) 1460
HinP1I GCGC 1 cut(s) 1460
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 5 cut(s) 288, 572, 615, 1148, 1249
HpaI GTTAAC 1 cut(s) 90
HpaII CCGG 7 cut(s) 8, 316, 637, 682, 741, 748, 832
Hpy166II GTNNAC 3 cut(s) 47, 90, 198
Hpy188I TCNGA 4 cut(s) 156, 161, 789, 858
Hpy188III TCNNGA 6 cut(s) 106, 206, 227, 378, 505, 592
Hpy8I GTNNAC 3 cut(s) 47, 90, 198
HpyAV CCTTC 3 cut(s) 658, 1229, 1341
HpyCH4III ACNGT 5 cut(s) 446, 1018, 1161, 1177, 1274
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 130, 1438
HpyF3I CTNAG 7 cut(s) 309, 408, 537, 1154, 1314, 1413, 1506
HspAI GCGC 1 cut(s) 1460
Ksp22I TGATCA 3 cut(s) 342, 948, 1105
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 8 cut(s) 111, 156, 223, 342, 849, 948, 1105, 1416
LmnI GCTCC 3 cut(s) 349, 552, 1483
Lsp1109I GCAGC 5 cut(s) 403, 666, 795, 955, 1351
LweI GCATC 5 cut(s) 111, 534, 894, 1285, 1334
MaeI CTAG 2 cut(s) 612, 884
MaeIII GTNAC 4 cut(s) 80, 446, 467, 1214
MalI GATC 8 cut(s) 113, 158, 225, 344, 851, 950, 1107, 1418
MboI GATC 8 cut(s) 111, 156, 223, 342, 849, 948, 1105, 1416
MboII GAAGA 4 cut(s) 121, 802, 964, 1211
MfeI CAATTG 2 cut(s) 1536, 1546
MhlI GDGCHC 2 cut(s) 315, 407
MlsI TGGCCA 1 cut(s) 600
MluCI AATT 7 cut(s) 21, 57, 630, 937, 1378, 1536, 1546
MluNI TGGCCA 1 cut(s) 600
MlyI GAGTC 1 cut(s) 609
MmeI TCCRAC 1 cut(s) 836
Mox20I TGGCCA 1 cut(s) 600
MroXI GAANNNNTTC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 600
MseI TTAA 4 cut(s) 89, 935, 1130, 1308
Msp20I TGGCCA 1 cut(s) 600
MspA1I CMGCKG 1 cut(s) 946
MspI CCGG 7 cut(s) 8, 316, 637, 682, 741, 748, 832
MspR9I CCNGG 6 cut(s) 8, 265, 316, 637, 741, 1344
MunI CAATTG 2 cut(s) 1536, 1546
Mva1269I GAATGC 2 cut(s) 536, 965
MvaI CCWGG 2 cut(s) 265, 1344
MvnI CGCG 1 cut(s) 1441
MwoI GCNNNNNNNGC 3 cut(s) 11, 130, 1438
NciI CCSGG 4 cut(s) 8, 316, 637, 741
NdeI CATATG 1 cut(s) 277
NdeII GATC 8 cut(s) 111, 156, 223, 342, 849, 948, 1105, 1416
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 446, 467, 1214
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 1197
PagI TCATGA 1 cut(s) 226
PctI GAATGC 2 cut(s) 536, 965
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 4 cut(s) 288, 572, 1148, 1249
PfoI TCCNGGA 2 cut(s) 635, 739
PkrI GCNGC 6 cut(s) 242, 393, 656, 810, 945, 1366
PleI GAGTC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 263, 1342
PspEI GGTNACC 1 cut(s) 1214
PspGI CCWGG 2 cut(s) 263, 1342
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 4 cut(s) 4, 137, 1014, 1370
PsrI GAACNNNNNNTAC 2 cut(s) 851, 883
PstNI CAGNNNCTG 1 cut(s) 1175
PvuII CAGCTG 1 cut(s) 946
RsaI GTAC 2 cut(s) 365, 605
RsaNI GTAC 2 cut(s) 364, 604
SaqAI TTAA 4 cut(s) 89, 935, 1130, 1308
SatI GCNGC 6 cut(s) 241, 392, 655, 809, 944, 1365
Sau3AI GATC 8 cut(s) 111, 156, 223, 342, 849, 948, 1105, 1416
Sau96I GGNCC 4 cut(s) 4, 137, 1014, 1370
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 6 cut(s) 8, 265, 316, 637, 741, 1344
SduI GDGCHC 2 cut(s) 315, 407
SfaNI GCATC 5 cut(s) 111, 534, 894, 1285, 1334
SfuI TTCGAA 1 cut(s) 1197
SinI GGWCC 2 cut(s) 1014, 1370
SmlI CTYRAG 2 cut(s) 204, 503
SmoI CTYRAG 2 cut(s) 204, 503
Sse9I AATT 7 cut(s) 21, 57, 630, 937, 1378, 1536, 1546
SsiI CCGC 3 cut(s) 241, 515, 1441
SspMI CTAG 2 cut(s) 612, 884
StyD4I CCNGG 6 cut(s) 6, 263, 314, 635, 739, 1342
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 5 cut(s) 446, 1018, 1161, 1177, 1274
TaqI TCGA 8 cut(s) 171, 222, 591, 648, 1060, 1186, 1197, 1375
TaqII GACCGA 1 cut(s) 842
TasI AATT 7 cut(s) 21, 57, 630, 937, 1378, 1536, 1546
TatI WGTACW 2 cut(s) 363, 603
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 4 cut(s) 288, 572, 1148, 1249
Tru1I TTAA 4 cut(s) 89, 935, 1130, 1308
Tru9I TTAA 4 cut(s) 89, 935, 1130, 1308
TscAI CASTG 2 cut(s) 625, 1000
TseFI GTSAC 3 cut(s) 446, 467, 1214
TseI GCWGC 5 cut(s) 391, 654, 808, 943, 1364
Tsp45I GTSAC 3 cut(s) 446, 467, 1214
TspDTI ATGAA 6 cut(s) 280, 478, 972, 1002, 1161, 1342
TspGWI ACGGA 3 cut(s) 344, 656, 1090
TspRI CASTG 2 cut(s) 625, 1000
VpaK11BI GGWCC 2 cut(s) 1014, 1370
XapI RAATTY 1 cut(s) 937
XceI RCATGY 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 2 cut(s) 612, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.