Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014039

Physical Location & Seq

Genomic Coordinates Forward (+)

9766936 .. 9771154

Gene Structure 4219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGCCGCGGTGGCGCTAACAATTCTGTTGGTGATATTCCTTGGTTTACTGGTAAGAATTGCTTACGACACTCTCTCATGTTACTGGTTAACACCGAGACGCATCAAGAAGATCATGGAGAAGCAAGGAGTGCGTGGCCCGAAACCCCGGTTTCTGATCGGAAACATCCTCGACATGGCCTCCCTTGTCTCCAAGTCCACTTCTCAAGACATGCATACCATCGATCATGACATTGTTGGCCGCCTGTTGCCCCATTATCTTGCCTGGTCTAAAATATATGGGAAAAGATTCATATATTGGAATGGAATTGAGCCCCGGATGTGTTTGACGGAGACTGAATTGATCAAGGAGCTTCTGTCCAAGTACAGCACCATATCTGGAAAATCATGGCTGCAACAACAAGGCTCTAAGCATTTTATTGGCCGGGGGTTACTAATGGCTAACGGTGACGACTGGTATCACCAGCGTCACATCGTTGCACCAGCATTCATGGGAGATAAACTCAAGAGCTATGCGGGATACATGGTGGAATGCACTAAGGAGATGCTCCATTCACTTCAAACTGAGATGGATTCGGGGCAAGGCGAGTTCGAGATAGGCGAGTTTTTCCCAAGTAAATATAATAGGGAAATAAAATCTCTAAAGATGGAGGTGGAGAGGCTATTGATGGAAATTATACAGAGCCGGAAAGATTGCGTGGAGATTGGTCGGAACAACTCTTATGGGAATGATTTGCTAGGGATGTTGCTAAATGAGATGCAGAAAAAGAGAGGGAATGGATTTAGCTTTAATTTGCAGCTAATCATGGATGAATGCAAGACATTCTTCTTTGCAGGACATGAAACCACTGCCCTCTTGCTCACTTGGACAGTCATGTTATTAGCCAGCAACCCATCTTGGCAAGAAAAGGTTCGAGCTGAAGTGAAGCAAGTGTGCAATGGTGAAACTCCCTCTGTTGATCATCTATCCAAACTCACCACGTTAAATATGGTAATAAATGAATCACTGAGGCTGTATCCACCAGCAACTGTTCTGCCTCGAATGGCTTTTGAAGACATCAAACTTGGTGACCTTCACATTCCAAAGGGGCTATCAGTATGGATTCCAGTCCTTGCCATTCACCACAGTAAAGAATTATGGGGTAAAGATGCAAATGAGTTTAATCCTGAGAGGTTTGCTTCCAAGTCATTCACACCAGGAAGGTTCATTCCTTTTGCTGCCGGTCCTCGAAATTGCATTGGTCAATCTTTTGCCATTATGGAAGCTAAGATCATATTAGCGATGTTAATCTCACGGTTTAGCTTCACGATTTCGCCAAGTTATCGCCATGCTCCCGTTATTGTGCTCACCATAAAGCCTAAGTATGGGGTTCAAGTATGCTTGAAACCTATTGATACTGGAAATGAATTGTATAGTCACATTAAATTTTTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005911 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009506 GO:0009690 GO:0009691 GO:0009987 GO:0010817 GO:0016491 GO:0018130 GO:0019438 GO:0030054 GO:0033397 GO:0033398 GO:0033400 GO:0033466 GO:0034641 GO:0034754 GO:0042445 GO:0042446 GO:0044237 GO:0044249 GO:0044271 GO:0046483 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

478

Amino Acids

54.46

Weight (kDa)

9.1

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	90 - 201	1.3e-10	Cytochrome P450
p450	PF00067	201 - 440	2.7e-67	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67110 AT1G67110 AT5G38450
fragaria_vesca	FvH4_6g45180
malus_domestica	MD09G1087700.v1.1 MD17G1076700.v1.1
prunus_persica	Prupe.3G237800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162891
rosa_laevigata	RLG00000021359
rosa_multiflora	Rmu_sc0006129.1_g000009
rosa_roxburghii	Rroxscaffold_2G00087740
rosa_rugosa	Rorug02G0499100
rosa_samantha	Rh2AG565000 Rh2BG577800 Rh2CG547500 Rh2DG587600
rosa_wichuraiana	Rw2G046760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	4 cut(s)	6, 8, 241, 515
AcoI	YGGCCR	3 cut(s)	3, 238, 421
AcsI	RAATTY	1 cut(s)	1424
AcuI	CTGAAG	1 cut(s)	939
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	175, 1364
AgsI	TTSAA	4 cut(s)	560, 1052, 1373, 1384
AjnI	CCWGG	2 cut(s)	263, 1195
AluBI	AGCT	7 cut(s)	352, 510, 786, 799, 917, 1265, 1302
AluI	AGCT	7 cut(s)	352, 510, 786, 799, 917, 1265, 1302
Alw21I	GWGCWC	1 cut(s)	1347
Alw26I	GTCTC	3 cut(s)	91, 193, 326
AlwNI	CAGNNNCTG	1 cut(s)	1028
AoxI	GGCC	5 cut(s)	3, 136, 177, 238, 421
ApeKI	GCWGC	3 cut(s)	391, 796, 1217
ApoI	RAATTY	1 cut(s)	1424
Asp700I	GAANNNNTTC	2 cut(s)	287, 909
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	137, 1223
AsuC2I	CCSGG	3 cut(s)	148, 316, 425
AsuHPI	GGTGA	8 cut(s)	43, 452, 458, 953, 967, 1079, 1112, 1339
AvaII	GGWCC	1 cut(s)	1223
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	1059
Bbv12I	GWGCWC	1 cut(s)	1347
BbvI	GCAGC	3 cut(s)	378, 808, 1204
BccI	CCATC	5 cut(s)	227, 562, 640, 661, 901
BciT130I	CCWGG	2 cut(s)	265, 1197
BciVI	GTATCC	2 cut(s)	512, 1026
BclI	TGATCA	2 cut(s)	342, 958
BcnI	CCSGG	3 cut(s)	148, 316, 425
BcoDI	GTCTC	3 cut(s)	91, 193, 326
BfaI	CTAG	1 cut(s)	737
BfoI	RGCGCY	1 cut(s)	17
BfuI	GTATCC	2 cut(s)	512, 1026
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	5 cut(s)	6, 241, 392, 797, 1218
BlsI	GCNGC	5 cut(s)	7, 242, 393, 798, 1219
Bme1390I	CCNGG	5 cut(s)	148, 265, 316, 425, 1197
Bme18I	GGWCC	1 cut(s)	1223
BmgT120I	GGNCC	2 cut(s)	137, 1223
BmrFI	CCNGG	5 cut(s)	148, 265, 316, 425, 1197
BmsI	GCATC	4 cut(s)	111, 534, 747, 1138
BpiI	GAAGAC	1 cut(s)	1059
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpuEI	CTTGAG	2 cut(s)	189, 488
BpuMI	CCSGG	3 cut(s)	148, 316, 425
Bsa29I	ATCGAT	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	1286
BsaJI	CCNNGG	5 cut(s)	6, 40, 146, 314, 424
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 1364
Bse118I	RCCGGY	1 cut(s)	1220
Bse1I	ACTGG	5 cut(s)	54, 89, 458, 1106, 1402
Bse3DI	GCAATG	1 cut(s)	943
Bse8I	GATNNNNATC	1 cut(s)	1286
BseBI	CCWGG	2 cut(s)	265, 1197
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	5 cut(s)	6, 40, 146, 314, 424
BseGI	GGATG	4 cut(s)	165, 324, 747, 814
BseJI	GATNNNNATC	1 cut(s)	1286
BseLI	CCNNNNNNNGG	2 cut(s)	175, 1364
BseMI	GCAATG	1 cut(s)	943
BseMII	CTCAG	3 cut(s)	555, 998, 1158
BseNI	ACTGG	5 cut(s)	54, 89, 458, 1106, 1402
BseXI	GCAGC	3 cut(s)	378, 808, 1204
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	5 cut(s)	5, 138, 179, 240, 423
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	1347
BsiSI	CCGG	5 cut(s)	148, 316, 424, 685, 1221
BslI	CCNNNNNNNGG	2 cut(s)	175, 1364
BsmAI	GTCTC	3 cut(s)	91, 193, 326
BsmBI	CGTCTC	1 cut(s)	91
BsmI	GAATGC	3 cut(s)	485, 536, 818
BsnI	GGCC	5 cut(s)	5, 138, 179, 240, 423
Bsp1286I	GDGCHC	2 cut(s)	315, 1347
Bsp143I	GATC	6 cut(s)	111, 156, 223, 342, 958, 1269
BspACI	CCGC	4 cut(s)	6, 8, 241, 515
BspANI	GGCC	5 cut(s)	5, 138, 179, 240, 423
BspCNI	CTCAG	3 cut(s)	556, 999, 1159
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	943
BsrFI	RCCGGY	1 cut(s)	1220
BsrI	ACTGG	5 cut(s)	54, 89, 458, 1106, 1402
BssAI	RCCGGY	1 cut(s)	1220
BssECI	CCNNGG	5 cut(s)	6, 40, 146, 314, 424
BssMI	GATC	6 cut(s)	111, 156, 223, 342, 958, 1269
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	265, 1197
Bst4CI	ACNGT	5 cut(s)	446, 871, 1030, 1127, 1296
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	886
BstDEI	CTNAG	7 cut(s)	408, 537, 564, 1007, 1167, 1266, 1359
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	1067
BstF5I	GGATG	4 cut(s)	165, 324, 747, 814
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	6 cut(s)	114, 159, 226, 345, 961, 1272
BstMAI	GTCTC	3 cut(s)	91, 193, 326
BstMBI	GATC	6 cut(s)	111, 156, 223, 342, 958, 1269
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 130
BstNI	CCWGG	2 cut(s)	265, 1197
BstNSI	RCATGY	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	1067
BstSCI	CCNGG	5 cut(s)	146, 263, 314, 423, 1195
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	378, 808, 1204
BstV2I	GAAGAC	1 cut(s)	1059
Bsu15I	ATCGAT	1 cut(s)	222
BsuI	GTATCC	2 cut(s)	512, 1026
BsuRI	GGCC	5 cut(s)	5, 138, 179, 240, 423
BsuTUI	ATCGAT	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	1295
BtsCI	GGATG	4 cut(s)	165, 324, 747, 814
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	2 cut(s)	846, 1004
Cac8I	GCNNGC	1 cut(s)	886
CaiI	CAGNNNCTG	1 cut(s)	1028
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	1220
Cfr13I	GGNCC	2 cut(s)	137, 1223
Cfr42I	CCGCGG	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	2 cut(s)	108, 455
Csp6I	GTAC	1 cut(s)	364
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	7 cut(s)	408, 537, 564, 1007, 1167, 1266, 1359
DpnI	GATC	6 cut(s)	113, 158, 225, 344, 960, 1271
DpnII	GATC	6 cut(s)	111, 156, 223, 342, 958, 1269
EaeI	YGGCCR	3 cut(s)	3, 238, 421
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	1223
Eco57I	CTGAAG	1 cut(s)	939
Eco91I	GGTNACC	1 cut(s)	1067
EcoO65I	GGTNACC	1 cut(s)	1067
EcoRII	CCWGG	2 cut(s)	263, 1195
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	91
FalI	AAGNNNNNCTT	4 cut(s)	46, 78, 809, 841
FauI	CCCGC	1 cut(s)	508
FbaI	TGATCA	2 cut(s)	342, 958
Fnu4HI	GCNGC	5 cut(s)	6, 241, 392, 797, 1218
FokI	GGATG	4 cut(s)	152, 331, 754, 821
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	5 cut(s)	6, 241, 392, 797, 1218
FspBI	CTAG	1 cut(s)	737
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	5 cut(s)	6, 241, 392, 797, 1218
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	5 cut(s)	5, 138, 179, 240, 423
HapII	CCGG	5 cut(s)	148, 316, 424, 685, 1221
HgaI	GACGC	2 cut(s)	108, 455
HhaI	GCGC	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	4 cut(s)	288, 572, 1001, 1102
HpaI	GTTAAC	1 cut(s)	90
HpaII	CCGG	5 cut(s)	148, 316, 424, 685, 1221
HphI	GGTGA	8 cut(s)	43, 452, 458, 953, 967, 1079, 1112, 1339
Hpy166II	GTNNAC	3 cut(s)	47, 90, 198
Hpy188I	TCNGA	3 cut(s)	156, 161, 711
Hpy188III	TCNNGA	8 cut(s)	106, 206, 227, 378, 505, 592, 1166, 1306
Hpy8I	GTNNAC	3 cut(s)	47, 90, 198
HpyAV	CCTTC	2 cut(s)	1082, 1194
HpyCH4III	ACNGT	5 cut(s)	446, 871, 1030, 1127, 1296
HpyCH4IV	ACGT	1 cut(s)	980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 130
HpyF3I	CTNAG	7 cut(s)	408, 537, 564, 1007, 1167, 1266, 1359
HpySE526I	ACGT	1 cut(s)	980
HspAI	GCGC	1 cut(s)	14
Ksp22I	TGATCA	2 cut(s)	342, 958
KspAI	GTTAAC	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	6 cut(s)	111, 156, 223, 342, 958, 1269
LmnI	GCTCC	3 cut(s)	349, 552, 1336
Lsp1109I	GCAGC	3 cut(s)	378, 808, 1204
LweI	GCATC	4 cut(s)	111, 534, 747, 1138
MaeI	CTAG	1 cut(s)	737
MaeII	ACGT	1 cut(s)	980
MaeIII	GTNAC	6 cut(s)	80, 429, 446, 467, 1067, 1415
MalI	GATC	6 cut(s)	113, 158, 225, 344, 960, 1271
MboI	GATC	6 cut(s)	111, 156, 223, 342, 958, 1269
MboII	GAAGA	3 cut(s)	121, 817, 1064
MhlI	GDGCHC	2 cut(s)	315, 1347
MmeI	TCCRAC	1 cut(s)	689
Mph1103I	ATGCAT	1 cut(s)	216
MroXI	GAANNNNTTC	2 cut(s)	287, 909
MseI	TTAA	6 cut(s)	89, 789, 983, 1161, 1286, 1422
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	5 cut(s)	148, 316, 424, 685, 1221
MspR9I	CCNGG	5 cut(s)	148, 265, 316, 425, 1197
Mva1269I	GAATGC	3 cut(s)	485, 536, 818
MvaI	CCWGG	2 cut(s)	265, 1197
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	11, 130
NciI	CCSGG	3 cut(s)	148, 316, 425
NdeII	GATC	6 cut(s)	111, 156, 223, 342, 958, 1269
NmuCI	GTSAC	4 cut(s)	446, 467, 1067, 1415
NsiI	ATGCAT	1 cut(s)	216
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PctI	GAATGC	3 cut(s)	485, 536, 818
PdmI	GAANNNNTTC	2 cut(s)	287, 909
PfeI	GAWTC	4 cut(s)	288, 572, 1001, 1102
PkrI	GCNGC	5 cut(s)	7, 242, 393, 798, 1219
Psp6I	CCWGG	2 cut(s)	263, 1195
PspEI	GGTNACC	1 cut(s)	1067
PspGI	CCWGG	2 cut(s)	263, 1195
PspPI	GGNCC	2 cut(s)	137, 1223
PstNI	CAGNNNCTG	1 cut(s)	1028
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacII	CCGCGG	1 cut(s)	9
SaqAI	TTAA	6 cut(s)	89, 789, 983, 1161, 1286, 1422
SatI	GCNGC	5 cut(s)	6, 241, 392, 797, 1218
Sau3AI	GATC	6 cut(s)	111, 156, 223, 342, 958, 1269
Sau96I	GGNCC	2 cut(s)	137, 1223
ScrFI	CCNGG	5 cut(s)	148, 265, 316, 425, 1197
SduI	GDGCHC	2 cut(s)	315, 1347
SfaNI	GCATC	4 cut(s)	111, 534, 747, 1138
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	1223
SmlI	CTYRAG	2 cut(s)	204, 503
SmoI	CTYRAG	2 cut(s)	204, 503
SsiI	CCGC	4 cut(s)	6, 8, 241, 515
SspMI	CTAG	1 cut(s)	737
StyD4I	CCNGG	5 cut(s)	146, 263, 314, 423, 1195
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	5 cut(s)	446, 871, 1030, 1127, 1296
TaiI	ACGT	1 cut(s)	983
TaqI	TCGA	6 cut(s)	171, 222, 591, 913, 1039, 1228
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	2 cut(s)	8, 243
TfiI	GAWTC	4 cut(s)	288, 572, 1001, 1102
Tru1I	TTAA	6 cut(s)	89, 789, 983, 1161, 1286, 1422
Tru9I	TTAA	6 cut(s)	89, 789, 983, 1161, 1286, 1422
TscAI	CASTG	2 cut(s)	853, 1011
TseFI	GTSAC	4 cut(s)	446, 467, 1067, 1415
TseI	GCWGC	3 cut(s)	391, 796, 1217
Tsp45I	GTSAC	4 cut(s)	446, 467, 1067, 1415
TspDTI	ATGAA	7 cut(s)	280, 478, 825, 855, 1014, 1195, 1419
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	853, 1011
VpaK11BI	GGWCC	1 cut(s)	1223
XapI	RAATTY	1 cut(s)	1424
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XmnI	GAANNNNTTC	2 cut(s)	287, 909
XspI	CTAG	1 cut(s)	737
Zsp2I	ATGCAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.