MD09G1087700.v1.1

Cytokinin hydroxylase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
6282008 .. 6286144
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1087700.v1.1.491

Sequence Viewer

Length: 1557 bp
ATGGCTGCGGTGCTCCTAACAACTCTGCTGGTCTTATTTCTTAGCTTATTACTAAGAGTTGCTTACGACACTCTCTCATGCTACTTTCTAACCCCGAGACGCATCAAGAGAATCATGGAAAAACAAGGAGTGCGTGGCCCTAAACCCCGCCCTCTCAACGGCAACATCTTGGACATGGCCACCCTTGTCACCAAATCAACCTCTCACGACATGCACACAAACGACCACGACATCGTCGGTCGCCTCCTGCCCCATTATGTCGCATGGTCCAAACAATATGGAAAAAGATTCATATATTGGAATGGAATTGAACCCCGGATGTGCTTGTCGGAGACTGAATTGATCAAGGAGCTTTTGTCCAAGTACAGCACCATCTCCGGCAAGTCATGGCTTCAACAGCAAGGCTCCAAGCATTTCATCGGCCGCGGATTACTGATGGCCAACGGCGAAGATTGGTACCATCAGCGCCACATCGTTGCACCGGCATTCACAGGAGATAGACTCAAGAGCTATGCGGGGTACATGGTGGAATGCACTAAACAGATGATCCAATCGCTGAAAAATGAGATAGAGACTTCAGGGAGAAGGGAGTTTGAGATTGGTGAATACATGACAAGGCTCACAGCCGACATAATTTCGAGGACAGAGTTCGATAGCAGCTACGAGAAGGGGAAGCAGATATTTCGACTGCTCACTGTTCTGCAGCATCTATGCGCCCAAGCAAGCAGGCACTTGTGCCTTCCCGGAAGCCGATTTTTCCCAAGTAAATACAACAGAGAAATAAAATCTCTGAAAATGGAGGTGGAGAGGCTGCTGATGGAGATAATCCAGAGCCGAAAGGACTGCGTTGAGATCGGTCGGAGTAGTTCTTATGGAAATGATTTGCTGGGGATGTTGCTCAATGAGATGCAGAAAAAAAGAGGGAATGGTTTCAGCTTAAACTTGCAGCTAATCATGGATGAATGCAAGACATTCTTCTTTGCAGGACATGAAACAACTGCCCTTTTACTCACTTGGACTGTCATGTTACTAGCCAGCAATCCCTCTTGGCAAGAAAAGGTTAGGGCTGAGGTGAAGCAAGTGTGCAATGGTGGAACACCATCTGTTGATCATCTTTCCAAGCTCACTTTGTTAAATAGGGTAATAAATGAATCACTGAGGCTGTATCCACCAGCAACTGTTCTACCTCGAATGGCTTTTGAGGACATCAAACTTGGTGACTTACATATTCCAAAGGGGCTATCGATATGGATTCCAGTGTTGGCTATTCACCACAGTGAAGAGTTATGGGGTAAAGATGCAAATGAGTTTAACCCTGAAAGATTTGCTTCTAAGTCCTTCACACCCGGGAGGTTCATTCCATTTGCTACCGGTCCAAGAAATTGTATCGGTCAATCTTTCGCTATGATGGAAGCTAAAATCATATTAGCAATGTTAATTTCACAATTTAGCTTTACTGTTTCGCCTAATTATCGTCACGCTCCAGTTATTGTCCTCACCATCAAACCCAAGTATGGTGTTCAAGTATGCTTGACCCCCATAGACCCTTCAAATTAG

Protein Analysis

519

Amino Acids

59.05

Weight (kDa)

9.31

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 86 - 490 1.3e-89 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014039)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 456
AccB1I GGYRCC 1 cut(s) 456
AccII CGCG 1 cut(s) 426
AciI CCGC 5 cut(s) 8, 148, 424, 426, 515
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 3 cut(s) 177, 421, 438
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 3 cut(s) 365, 458, 521
AfiI CCNNNNNNNGG 2 cut(s) 158, 1514
AgeI ACCGGT 1 cut(s) 1370
AgsI TTSAA 4 cut(s) 311, 395, 1523, 1551
AleI CACNNNNGTG 1 cut(s) 1275
AluBI AGCT 9 cut(s) 45, 352, 510, 660, 936, 949, 1123, 1415, 1452
AluI AGCT 9 cut(s) 45, 352, 510, 660, 936, 949, 1123, 1415, 1452
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 3 cut(s) 91, 326, 566
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 1178
Ama87I CYCGRG 2 cut(s) 94, 1346
AoxI GGCC 4 cut(s) 136, 177, 421, 438
ApeKI GCWGC 5 cut(s) 5, 657, 703, 811, 946
AsiGI ACCGGT 1 cut(s) 1370
Asp700I GAANNNNTTC 1 cut(s) 929
Asp718I GGTACC 1 cut(s) 456
AspLEI GCGC 2 cut(s) 468, 716
AspS9I GGNCC 3 cut(s) 137, 267, 1373
AsuC2I CCSGG 4 cut(s) 316, 744, 1347, 1348
AsuHPI GGTGA 6 cut(s) 181, 614, 1084, 1229, 1262, 1489
AvaI CYCGRG 2 cut(s) 94, 1346
AvaII GGWCC 2 cut(s) 267, 1373
BalI TGGCCA 2 cut(s) 179, 440
BanI GGYRCC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 15
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 4 cut(s) 669, 715, 798, 958
BccI CCATC 7 cut(s) 380, 430, 468, 811, 1108, 1402, 1508
BceAI ACGGC 2 cut(s) 175, 460
BcgI CGANNNNNNTGC 4 cut(s) 665, 699, 825, 859
BciVI GTATCC 1 cut(s) 1176
BclI TGATCA 2 cut(s) 342, 1108
BcnI CCSGG 4 cut(s) 316, 744, 1347, 1348
BcoDI GTCTC 3 cut(s) 91, 326, 566
BfaI CTAG 1 cut(s) 1031
BfmI CTRYAG 1 cut(s) 701
BfoI RGCGCY 1 cut(s) 469
BfuI GTATCC 1 cut(s) 1176
BisI GCNGC 6 cut(s) 6, 424, 658, 704, 812, 947
BlsI GCNGC 6 cut(s) 7, 425, 659, 705, 813, 948
Bme1390I CCNGG 4 cut(s) 316, 744, 1347, 1348
Bme18I GGWCC 2 cut(s) 267, 1373
BmeT110I CYCGRG 2 cut(s) 94, 1346
BmgT120I GGNCC 3 cut(s) 137, 267, 1373
BmiI GGNNCC 2 cut(s) 406, 458
BmrFI CCNGG 4 cut(s) 316, 744, 1347, 1348
BmsI GCATC 4 cut(s) 111, 715, 897, 1288
BplI GAGNNNNNCTC 2 cut(s) 486, 518
BpmI CTGGAG 1 cut(s) 1467
Bpu10I CCTNAGC 1 cut(s) 1068
BpuEI CTTGAG 1 cut(s) 488
BpuMI CCSGG 4 cut(s) 316, 744, 1347, 1348
Bsa29I ATCGAT 1 cut(s) 1244
BsaJI CCNNGG 3 cut(s) 314, 424, 1346
BsaWI WCCGGW 1 cut(s) 1370
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 1514
Bse118I RCCGGY 2 cut(s) 481, 1370
Bse1I ACTGG 2 cut(s) 1256, 1484
Bse3DI GCAATG 2 cut(s) 1093, 1437
BseCI ATCGAT 1 cut(s) 1244
BseDI CCNNGG 3 cut(s) 314, 424, 1346
BseGI GGATG 3 cut(s) 324, 897, 964
BseLI CCNNNNNNNGG 2 cut(s) 158, 1514
BseMI GCAATG 2 cut(s) 1093, 1437
BseMII CTCAG 2 cut(s) 1059, 1148
BseNI ACTGG 2 cut(s) 1256, 1484
BseX3I CGGCCG 1 cut(s) 421
BseXI GCAGC 4 cut(s) 669, 715, 798, 958
BseYI CCCAGC 1 cut(s) 886
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 3 cut(s) 241, 424, 859
BshFI GGCC 4 cut(s) 138, 179, 423, 440
BshNI GGYRCC 1 cut(s) 456
BshTI ACCGGT 1 cut(s) 1370
BshVI ATCGAT 1 cut(s) 1244
BsiEI CGRYCG 3 cut(s) 241, 424, 859
BsiHKAI GWGCWC 1 cut(s) 15
BsiHKCI CYCGRG 2 cut(s) 94, 1346
BsiSI CCGG 6 cut(s) 316, 378, 482, 744, 1347, 1371
BslI CCNNNNNNNGG 2 cut(s) 158, 1514
BsmAI GTCTC 3 cut(s) 91, 326, 566
BsmBI CGTCTC 1 cut(s) 91
BsmI GAATGC 3 cut(s) 485, 536, 968
BsnI GGCC 4 cut(s) 138, 179, 423, 440
BsoBI CYCGRG 2 cut(s) 94, 1346
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 4 cut(s) 342, 546, 852, 1108
BspACI CCGC 5 cut(s) 8, 148, 424, 426, 515
BspANI GGCC 4 cut(s) 138, 179, 423, 440
BspCNI CTCAG 2 cut(s) 1060, 1149
BspDI ATCGAT 1 cut(s) 1244
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 406, 458
BspMAI CTGCAG 1 cut(s) 705
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 456
BsrDI GCAATG 2 cut(s) 1093, 1437
BsrFI RCCGGY 2 cut(s) 481, 1370
BsrI ACTGG 2 cut(s) 1256, 1484
BssAI RCCGGY 2 cut(s) 481, 1370
BssECI CCNNGG 3 cut(s) 314, 424, 1346
BssMI GATC 4 cut(s) 342, 546, 852, 1108
Bst4CI ACNGT 5 cut(s) 697, 1021, 1180, 1277, 1459
Bst6I CTCTTC 1 cut(s) 1275
BstC8I GCNNGC 3 cut(s) 724, 728, 1036
BstDEI CTNAG 5 cut(s) 41, 53, 1068, 1157, 1332
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 3 cut(s) 324, 897, 964
BstFNI CGCG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 2 cut(s) 468, 716
BstKTI GATC 4 cut(s) 345, 549, 855, 1111
BstMAI GTCTC 3 cut(s) 91, 326, 566
BstMBI GATC 4 cut(s) 342, 546, 852, 1108
BstMCI CGRYCG 3 cut(s) 241, 424, 859
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 4 cut(s) 314, 742, 1345, 1346
BstSFI CTRYAG 1 cut(s) 701
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 4 cut(s) 669, 715, 798, 958
BstZI CGGCCG 1 cut(s) 421
Bsu15I ATCGAT 1 cut(s) 1244
BsuI GTATCC 1 cut(s) 1176
BsuRI GGCC 4 cut(s) 138, 179, 423, 440
BsuTUI ATCGAT 1 cut(s) 1244
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 3 cut(s) 324, 897, 964
BtsIMutI CAGTG 4 cut(s) 693, 1154, 1263, 1282
Cac8I GCNNGC 3 cut(s) 724, 728, 1036
CaiI CAGNNNCTG 1 cut(s) 1178
CfoI GCGC 2 cut(s) 468, 716
Cfr10I RCCGGY 2 cut(s) 481, 1370
Cfr13I GGNCC 3 cut(s) 137, 267, 1373
Cfr42I CCGCGG 1 cut(s) 427
Cfr9I CCCGGG 1 cut(s) 1346
ClaI ATCGAT 1 cut(s) 1244
CseI GACGC 1 cut(s) 108
Csp6I GTAC 3 cut(s) 364, 457, 520
CspAI ACCGGT 1 cut(s) 1370
CviQI GTAC 3 cut(s) 364, 457, 520
DdeI CTNAG 5 cut(s) 41, 53, 1068, 1157, 1332
DpnI GATC 4 cut(s) 344, 548, 854, 1110
DpnII GATC 4 cut(s) 342, 546, 852, 1108
EaeI YGGCCR 3 cut(s) 177, 421, 438
EagI CGGCCG 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 1275
EarI CTCTTC 1 cut(s) 1275
EclXI CGGCCG 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 267, 1373
Eco52I CGGCCG 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 561
Eco88I CYCGRG 2 cut(s) 94, 1346
Esp3I CGTCTC 1 cut(s) 91
FalI AAGNNNNNCTT 6 cut(s) 46, 78, 959, 991, 1312, 1344
FauI CCCGC 2 cut(s) 155, 508
FbaI TGATCA 2 cut(s) 342, 1108
Fnu4HI GCNGC 6 cut(s) 6, 424, 658, 704, 812, 947
FokI GGATG 3 cut(s) 331, 904, 971
Fsp4HI GCNGC 6 cut(s) 6, 424, 658, 704, 812, 947
FspBI CTAG 1 cut(s) 1031
GlaI GCGC 2 cut(s) 467, 715
GluI GCNGC 6 cut(s) 6, 424, 658, 704, 812, 947
GsaI CCCAGC 1 cut(s) 890
GsuI CTGGAG 1 cut(s) 1467
HaeII RGCGCY 1 cut(s) 469
HaeIII GGCC 4 cut(s) 138, 179, 423, 440
HapII CCGG 6 cut(s) 316, 378, 482, 744, 1347, 1371
HgaI GACGC 1 cut(s) 108
HhaI GCGC 2 cut(s) 468, 716
Hin6I GCGC 2 cut(s) 466, 714
HinP1I GCGC 2 cut(s) 466, 714
HinfI GANTC 5 cut(s) 111, 288, 501, 1151, 1252
HpaII CCGG 6 cut(s) 316, 378, 482, 744, 1347, 1371
HphI GGTGA 6 cut(s) 181, 614, 1084, 1229, 1262, 1489
Hpy188I TCNGA 3 cut(s) 331, 792, 861
Hpy188III TCNNGA 4 cut(s) 106, 206, 505, 829
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 5 cut(s) 579, 661, 749, 1348, 1557
HpyCH4III ACNGT 5 cut(s) 697, 1021, 1180, 1277, 1459
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 5 cut(s) 41, 53, 1068, 1157, 1332
HspAI GCGC 2 cut(s) 466, 714
KpnI GGTACC 1 cut(s) 460
Ksp22I TGATCA 2 cut(s) 342, 1108
KspI CCGCGG 1 cut(s) 427
Kzo9I GATC 4 cut(s) 342, 546, 852, 1108
LmnI GCTCC 4 cut(s) 18, 349, 410, 1486
Lsp1109I GCAGC 4 cut(s) 669, 715, 798, 958
LweI GCATC 4 cut(s) 111, 715, 897, 1288
MaeI CTAG 1 cut(s) 1031
MaeIII GTNAC 4 cut(s) 187, 1026, 1217, 1475
MalI GATC 4 cut(s) 344, 548, 854, 1110
MboI GATC 4 cut(s) 342, 546, 852, 1108
MboII GAAGA 3 cut(s) 461, 967, 1292
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 2 cut(s) 179, 440
MluCI AATT 8 cut(s) 306, 338, 633, 1381, 1437, 1445, 1468, 1552
MluNI TGGCCA 2 cut(s) 179, 440
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 2 cut(s) 309, 839
Mox20I TGGCCA 2 cut(s) 179, 440
MroXI GAANNNNTTC 1 cut(s) 929
MscI TGGCCA 2 cut(s) 179, 440
MseI TTAA 4 cut(s) 938, 1133, 1311, 1436
MslI CAYNNNNRTG 1 cut(s) 1275
Msp20I TGGCCA 2 cut(s) 179, 440
MspA1I CMGCKG 1 cut(s) 426
MspI CCGG 6 cut(s) 316, 378, 482, 744, 1347, 1371
MspR9I CCNGG 4 cut(s) 316, 744, 1347, 1348
Mva1269I GAATGC 3 cut(s) 485, 536, 968
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 397
NciI CCSGG 4 cut(s) 316, 744, 1347, 1348
NdeII GATC 4 cut(s) 342, 546, 852, 1108
NlaIV GGNNCC 2 cut(s) 406, 458
NmuCI GTSAC 3 cut(s) 187, 1217, 1475
NspI RCATGY 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 1275
PctI GAATGC 3 cut(s) 485, 536, 968
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 4 cut(s) 111, 288, 1151, 1252
PflFI GACNNNGTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 742
PinAI ACCGGT 1 cut(s) 1370
PkrI GCNGC 6 cut(s) 7, 425, 659, 705, 813, 948
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PspFI CCCAGC 1 cut(s) 886
PspN4I GGNNCC 2 cut(s) 406, 458
PspPI GGNCC 3 cut(s) 137, 267, 1373
PstI CTGCAG 1 cut(s) 705
PstNI CAGNNNCTG 1 cut(s) 1178
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 3 cut(s) 365, 458, 521
RsaNI GTAC 3 cut(s) 364, 457, 520
RseI CAYNNNNRTG 1 cut(s) 1275
SacII CCGCGG 1 cut(s) 427
SaqAI TTAA 4 cut(s) 938, 1133, 1311, 1436
SatI GCNGC 6 cut(s) 6, 424, 658, 704, 812, 947
Sau3AI GATC 4 cut(s) 342, 546, 852, 1108
Sau96I GGNCC 3 cut(s) 137, 267, 1373
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 4 cut(s) 316, 744, 1347, 1348
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 4 cut(s) 111, 715, 897, 1288
SfcI CTRYAG 1 cut(s) 701
Sfr303I CCGCGG 1 cut(s) 427
SgrBI CCGCGG 1 cut(s) 427
SinI GGWCC 2 cut(s) 267, 1373
SmaI CCCGGG 1 cut(s) 1348
SmiMI CAYNNNNRTG 1 cut(s) 1275
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 8 cut(s) 306, 338, 633, 1381, 1437, 1445, 1468, 1552
SsiI CCGC 5 cut(s) 8, 148, 424, 426, 515
SspMI CTAG 1 cut(s) 1031
StyD4I CCNGG 4 cut(s) 314, 742, 1345, 1346
TaaI ACNGT 5 cut(s) 697, 1021, 1180, 1277, 1459
TaqI TCGA 5 cut(s) 638, 651, 685, 1189, 1244
TaqII GACCGA 3 cut(s) 227, 845, 1379
TasI AATT 8 cut(s) 306, 338, 633, 1381, 1437, 1445, 1468, 1552
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 4 cut(s) 111, 288, 1151, 1252
Tru1I TTAA 4 cut(s) 938, 1133, 1311, 1436
Tru9I TTAA 4 cut(s) 938, 1133, 1311, 1436
TscAI CASTG 4 cut(s) 700, 1161, 1263, 1282
TseFI GTSAC 3 cut(s) 187, 1217, 1475
TseI GCWGC 5 cut(s) 5, 657, 703, 811, 946
Tsp45I GTSAC 3 cut(s) 187, 1217, 1475
TspDTI ATGAA 6 cut(s) 280, 406, 975, 1005, 1164, 1345
TspMI CCCGGG 1 cut(s) 1346
TspRI CASTG 4 cut(s) 700, 1161, 1263, 1282
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 267, 1373
XceI RCATGY 1 cut(s) 214
XmaI CCCGGG 1 cut(s) 1346
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.