Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006129.1

Orthogroup ID

OG0014039

Physical Location & Seq

Genomic Coordinates Forward (+)

45099 .. 49354

Gene Structure 4256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006129.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

atggccgcggtggcgctaacaattctgttggtgatattccttggtttactggtaagaattgcttacgacactctctcatgttactggttaacaccgagacgcatcaagaagatcatggagaagcaaggagtgcgtggcccgaaaccccggtttctgatcggaaacatcctcgacatggcctcccttgtctccaagtccacttctcaagacatgcatgccatcgatcatgacattgttggccgcctgttaccccattatcttgcctggtctaaaatatatgggaaacgattcatatattggaatggaattgagccccggatgtgtttgacggagactgaattgatcaaggagcttctgtccaagtacagcaccatatctggaaaatcatggctgcaacaacaaggctctaagcattttattggccgggggttactaatggctaacggtgacgactggtatcaccagcgtcacatcgttgcacccgcattcatgggagataaactcaagagctatgcgggatacatggtggaatgcactaagaagatgctccattcactacaaactgagatggattcggggcaaggcgagttcgagataggcgactatatgacaagactcaccgccgacataatttcccggacggagttcgacagcagctatgagaagggaaaacagattttccggctactcacccttttgcagaaacaatgcgcccaagcaagcaagcacctttgcgttcccggaagccggtttttcccaagtaaatataatagggaaataaaatctctaaagatggaggtggagaggctattgatggaaattatacagagccggaaagattgcgtggagattggtcggaacaactcttatgggaatgatttgctagggatgttgctaaatgagatgcagaaaaagagagggaatggatttagctttaatttgcagctaatcatggatgaatgcaagacattcttctttgcaggacatgaaaccactgccctcttgctcacttggacagtcatgttattagccagcaacccatcttggcaagaaaaggttcgagctgaagtgaagcaagtgtgcaatggtgaaactccctctgttgatcatctatccaaactcgccatgttaaatatggtaataaatgaatcactgaggctgtacccaccagcaactgttctgcctcgaatggctttcgaagacatcaaacttggtgaccttcacattccaaaggggctatcagtatggattccagtccttgccattcaccacagtaaagaattatggggtaaagatgcaaatgagtttaaccctgagaggtttgcttccaagtcattcacaccaggaaggttcattccttttgctgccggtcctcgaaattgcattggtcaatcttttgccattatggaagctaagatcatattagcgatgttaatctcacggtttagcttcacgatttcgccaagttatcgccatgctcccgttattgtgctcaccataaagcctaagtatggggttcaagtatgcttgaaacctattgatcctggaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005911 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009506 GO:0009690 GO:0009691 GO:0009987 GO:0010817 GO:0016491 GO:0018130 GO:0019438 GO:0030054 GO:0033397 GO:0033398 GO:0033400 GO:0033466 GO:0034641 GO:0034754 GO:0042445 GO:0042446 GO:0044237 GO:0044249 GO:0044271 GO:0046483 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

517

Amino Acids

58.79

Weight (kDa)

9.31

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67110 AT1G67110 AT5G38450
fragaria_vesca	FvH4_6g45180
malus_domestica	MD09G1087700.v1.1 MD17G1076700.v1.1
prunus_persica	Prupe.3G237800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162891
rosa_laevigata	RLG00000021359
rosa_multiflora	Rmu_sc0006129.1_g000009
rosa_roxburghii	Rroxscaffold_2G00087740
rosa_rugosa	Rorug02G0499100
rosa_samantha	Rh2AG565000 Rh2BG577800 Rh2CG547500 Rh2DG587600
rosa_wichuraiana	Rw2G046760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	6 cut(s)	6, 8, 241, 483, 515, 621
AclWI	GGATC	1 cut(s)	1535
AcoI	YGGCCR	3 cut(s)	3, 238, 421
AcuI	CTGAAG	1 cut(s)	1086
AfaI	GTAC	2 cut(s)	365, 1163
AfiI	CCNNNNNNNGG	3 cut(s)	175, 747, 1511
AgsI	TTSAA	2 cut(s)	1520, 1531
AjnI	CCWGG	3 cut(s)	263, 1342, 1543
AluBI	AGCT	8 cut(s)	352, 510, 657, 933, 946, 1064, 1412, 1449
AluI	AGCT	8 cut(s)	352, 510, 657, 933, 946, 1064, 1412, 1449
Alw21I	GWGCWC	1 cut(s)	1494
Alw26I	GTCTC	3 cut(s)	91, 193, 326
AlwI	GGATC	1 cut(s)	1535
AlwNI	CAGNNNCTG	1 cut(s)	1175
AoxI	GGCC	5 cut(s)	3, 136, 177, 238, 421
ApeKI	GCWGC	4 cut(s)	391, 654, 943, 1364
Asp700I	GAANNNNTTC	2 cut(s)	287, 1056
AspLEI	GCGC	2 cut(s)	16, 713
AspS9I	GGNCC	2 cut(s)	137, 1370
AsuC2I	CCSGG	5 cut(s)	148, 316, 425, 637, 741
AsuHPI	GGTGA	9 cut(s)	43, 452, 458, 610, 682, 1100, 1226, 1259, 1486
AsuII	TTCGAA	1 cut(s)	1197
AvaII	GGWCC	1 cut(s)	1370
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	1206
Bbv12I	GWGCWC	1 cut(s)	1494
BbvI	GCAGC	4 cut(s)	378, 666, 955, 1351
BccI	CCATC	5 cut(s)	227, 562, 787, 808, 1048
BciT130I	CCWGG	3 cut(s)	265, 1344, 1545
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	2 cut(s)	342, 1105
BcnI	CCSGG	5 cut(s)	148, 316, 425, 637, 741
BcoDI	GTCTC	3 cut(s)	91, 193, 326
BfaI	CTAG	1 cut(s)	884
BfoI	RGCGCY	1 cut(s)	17
BfuI	GTATCC	1 cut(s)	512
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	6 cut(s)	6, 241, 392, 655, 944, 1365
BlsI	GCNGC	6 cut(s)	7, 242, 393, 656, 945, 1366
Bme1390I	CCNGG	8 cut(s)	148, 265, 316, 425, 637, 741, 1344, 1545
Bme18I	GGWCC	1 cut(s)	1370
BmgT120I	GGNCC	2 cut(s)	137, 1370
BmrFI	CCNGG	8 cut(s)	148, 265, 316, 425, 637, 741, 1344, 1545
BmsI	GCATC	4 cut(s)	111, 534, 894, 1285
BpiI	GAAGAC	1 cut(s)	1206
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
Bpu14I	TTCGAA	1 cut(s)	1197
BpuEI	CTTGAG	2 cut(s)	189, 488
BpuMI	CCSGG	5 cut(s)	148, 316, 425, 637, 741
Bsa29I	ATCGAT	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	1433
BsaJI	CCNNGG	5 cut(s)	6, 40, 146, 314, 424
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 747, 1511
Bse118I	RCCGGY	2 cut(s)	747, 1367
Bse1I	ACTGG	4 cut(s)	54, 89, 458, 1253
Bse3DI	GCAATG	1 cut(s)	1090
Bse8I	GATNNNNATC	1 cut(s)	1433
BseBI	CCWGG	3 cut(s)	265, 1344, 1545
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	5 cut(s)	6, 40, 146, 314, 424
BseGI	GGATG	4 cut(s)	165, 324, 894, 961
BseJI	GATNNNNATC	1 cut(s)	1433
BseLI	CCNNNNNNNGG	3 cut(s)	175, 747, 1511
BseMI	GCAATG	1 cut(s)	1090
BseMII	CTCAG	3 cut(s)	555, 1145, 1305
BseNI	ACTGG	4 cut(s)	54, 89, 458, 1253
BseXI	GCAGC	4 cut(s)	378, 666, 955, 1351
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	5 cut(s)	5, 138, 179, 240, 423
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	1494
BsiSI	CCGG	9 cut(s)	148, 316, 424, 637, 682, 741, 748, 832, 1368
BslI	CCNNNNNNNGG	3 cut(s)	175, 747, 1511
BsmAI	GTCTC	3 cut(s)	91, 193, 326
BsmBI	CGTCTC	1 cut(s)	91
BsmI	GAATGC	3 cut(s)	485, 536, 965
BsnI	GGCC	5 cut(s)	5, 138, 179, 240, 423
Bsp119I	TTCGAA	1 cut(s)	1197
Bsp1286I	GDGCHC	2 cut(s)	315, 1494
Bsp143I	GATC	7 cut(s)	111, 156, 223, 342, 1105, 1416, 1540
BspACI	CCGC	6 cut(s)	6, 8, 241, 483, 515, 621
BspANI	GGCC	5 cut(s)	5, 138, 179, 240, 423
BspCNI	CTCAG	3 cut(s)	556, 1146, 1306
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	226
BspPI	GGATC	1 cut(s)	1535
BspT104I	TTCGAA	1 cut(s)	1197
BsrDI	GCAATG	1 cut(s)	1090
BsrFI	RCCGGY	2 cut(s)	747, 1367
BsrI	ACTGG	4 cut(s)	54, 89, 458, 1253
BssAI	RCCGGY	2 cut(s)	747, 1367
BssECI	CCNNGG	5 cut(s)	6, 40, 146, 314, 424
BssMI	GATC	7 cut(s)	111, 156, 223, 342, 1105, 1416, 1540
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	3 cut(s)	265, 1344, 1545
Bst4CI	ACNGT	5 cut(s)	446, 1018, 1177, 1274, 1443
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	1197
BstC8I	GCNNGC	4 cut(s)	216, 721, 725, 1033
BstDEI	CTNAG	7 cut(s)	408, 537, 564, 1154, 1314, 1413, 1506
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	1214
BstF5I	GGATG	4 cut(s)	165, 324, 894, 961
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 713
BstKTI	GATC	7 cut(s)	114, 159, 226, 345, 1108, 1419, 1543
BstMAI	GTCTC	3 cut(s)	91, 193, 326
BstMBI	GATC	7 cut(s)	111, 156, 223, 342, 1105, 1416, 1540
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 130
BstNI	CCWGG	3 cut(s)	265, 1344, 1545
BstNSI	RCATGY	2 cut(s)	214, 218
BstPI	GGTNACC	1 cut(s)	1214
BstSCI	CCNGG	8 cut(s)	146, 263, 314, 423, 635, 739, 1342, 1543
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	4 cut(s)	378, 666, 955, 1351
BstV2I	GAAGAC	1 cut(s)	1206
Bsu15I	ATCGAT	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	5 cut(s)	5, 138, 179, 240, 423
BsuTUI	ATCGAT	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	1442
BtsCI	GGATG	4 cut(s)	165, 324, 894, 961
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	2 cut(s)	993, 1151
Cac8I	GCNNGC	4 cut(s)	216, 721, 725, 1033
CaiI	CAGNNNCTG	1 cut(s)	1175
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	16, 713
Cfr10I	RCCGGY	2 cut(s)	747, 1367
Cfr13I	GGNCC	2 cut(s)	137, 1370
Cfr42I	CCGCGG	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	2 cut(s)	108, 455
Csp6I	GTAC	2 cut(s)	364, 1162
CviQI	GTAC	2 cut(s)	364, 1162
DdeI	CTNAG	7 cut(s)	408, 537, 564, 1154, 1314, 1413, 1506
DpnI	GATC	7 cut(s)	113, 158, 225, 344, 1107, 1418, 1542
DpnII	GATC	7 cut(s)	111, 156, 223, 342, 1105, 1416, 1540
EaeI	YGGCCR	3 cut(s)	3, 238, 421
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	1370
Eco57I	CTGAAG	1 cut(s)	1086
Eco91I	GGTNACC	1 cut(s)	1214
EcoO65I	GGTNACC	1 cut(s)	1214
EcoRII	CCWGG	3 cut(s)	263, 1342, 1543
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	91
FalI	AAGNNNNNCTT	4 cut(s)	46, 78, 956, 988
FauI	CCCGC	2 cut(s)	490, 508
FbaI	TGATCA	2 cut(s)	342, 1105
Fnu4HI	GCNGC	6 cut(s)	6, 241, 392, 655, 944, 1365
FokI	GGATG	4 cut(s)	152, 331, 901, 968
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	6 cut(s)	6, 241, 392, 655, 944, 1365
FspBI	CTAG	1 cut(s)	884
GlaI	GCGC	2 cut(s)	15, 712
GluI	GCNGC	6 cut(s)	6, 241, 392, 655, 944, 1365
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	5 cut(s)	5, 138, 179, 240, 423
HapII	CCGG	9 cut(s)	148, 316, 424, 637, 682, 741, 748, 832, 1368
HgaI	GACGC	2 cut(s)	108, 455
HhaI	GCGC	2 cut(s)	16, 713
Hin6I	GCGC	2 cut(s)	14, 711
HinP1I	GCGC	2 cut(s)	14, 711
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	5 cut(s)	288, 572, 615, 1148, 1249
HpaI	GTTAAC	1 cut(s)	90
HpaII	CCGG	9 cut(s)	148, 316, 424, 637, 682, 741, 748, 832, 1368
HphI	GGTGA	9 cut(s)	43, 452, 458, 610, 682, 1100, 1226, 1259, 1486
Hpy166II	GTNNAC	3 cut(s)	47, 90, 198
Hpy188I	TCNGA	3 cut(s)	156, 161, 858
Hpy188III	TCNNGA	7 cut(s)	106, 206, 227, 378, 505, 592, 1453
Hpy8I	GTNNAC	3 cut(s)	47, 90, 198
HpyAV	CCTTC	3 cut(s)	658, 1229, 1341
HpyCH4III	ACNGT	5 cut(s)	446, 1018, 1177, 1274, 1443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 130
HpyF3I	CTNAG	7 cut(s)	408, 537, 564, 1154, 1314, 1413, 1506
HspAI	GCGC	2 cut(s)	14, 711
Ksp22I	TGATCA	2 cut(s)	342, 1105
KspAI	GTTAAC	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	7 cut(s)	111, 156, 223, 342, 1105, 1416, 1540
LmnI	GCTCC	3 cut(s)	349, 552, 1483
Lsp1109I	GCAGC	4 cut(s)	378, 666, 955, 1351
LweI	GCATC	4 cut(s)	111, 534, 894, 1285
MaeI	CTAG	1 cut(s)	884
MaeIII	GTNAC	6 cut(s)	80, 246, 429, 446, 467, 1214
MalI	GATC	7 cut(s)	113, 158, 225, 344, 1107, 1418, 1542
MboI	GATC	7 cut(s)	111, 156, 223, 342, 1105, 1416, 1540
MboII	GAAGA	4 cut(s)	121, 553, 964, 1211
MhlI	GDGCHC	2 cut(s)	315, 1494
MlyI	GAGTC	1 cut(s)	609
MmeI	TCCRAC	1 cut(s)	836
Mph1103I	ATGCAT	1 cut(s)	216
MroXI	GAANNNNTTC	2 cut(s)	287, 1056
MseI	TTAA	6 cut(s)	89, 936, 1130, 1308, 1433, 1552
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	9 cut(s)	148, 316, 424, 637, 682, 741, 748, 832, 1368
MspR9I	CCNGG	8 cut(s)	148, 265, 316, 425, 637, 741, 1344, 1545
Mva1269I	GAATGC	3 cut(s)	485, 536, 965
MvaI	CCWGG	3 cut(s)	265, 1344, 1545
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	11, 130
NciI	CCSGG	5 cut(s)	148, 316, 425, 637, 741
NdeII	GATC	7 cut(s)	111, 156, 223, 342, 1105, 1416, 1540
NmuCI	GTSAC	3 cut(s)	446, 467, 1214
NsiI	ATGCAT	1 cut(s)	216
NspI	RCATGY	2 cut(s)	214, 218
NspV	TTCGAA	1 cut(s)	1197
PaeI	GCATGC	1 cut(s)	218
PagI	TCATGA	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PctI	GAATGC	3 cut(s)	485, 536, 965
PdmI	GAANNNNTTC	2 cut(s)	287, 1056
PfeI	GAWTC	4 cut(s)	288, 572, 1148, 1249
PfoI	TCCNGGA	3 cut(s)	635, 739, 1543
PkrI	GCNGC	6 cut(s)	7, 242, 393, 656, 945, 1366
PleI	GAGTC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	609
Psp6I	CCWGG	3 cut(s)	263, 1342, 1543
PspEI	GGTNACC	1 cut(s)	1214
PspGI	CCWGG	3 cut(s)	263, 1342, 1543
PspPI	GGNCC	2 cut(s)	137, 1370
PstNI	CAGNNNCTG	1 cut(s)	1175
RsaI	GTAC	2 cut(s)	365, 1163
RsaNI	GTAC	2 cut(s)	364, 1162
SacII	CCGCGG	1 cut(s)	9
SaqAI	TTAA	6 cut(s)	89, 936, 1130, 1308, 1433, 1552
SatI	GCNGC	6 cut(s)	6, 241, 392, 655, 944, 1365
Sau3AI	GATC	7 cut(s)	111, 156, 223, 342, 1105, 1416, 1540
Sau96I	GGNCC	2 cut(s)	137, 1370
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	8 cut(s)	148, 265, 316, 425, 637, 741, 1344, 1545
SduI	GDGCHC	2 cut(s)	315, 1494
SfaNI	GCATC	4 cut(s)	111, 534, 894, 1285
Sfr303I	CCGCGG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	1197
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	1370
SmlI	CTYRAG	2 cut(s)	204, 503
SmoI	CTYRAG	2 cut(s)	204, 503
SphI	GCATGC	1 cut(s)	218
SsiI	CCGC	6 cut(s)	6, 8, 241, 483, 515, 621
SspMI	CTAG	1 cut(s)	884
StyD4I	CCNGG	8 cut(s)	146, 263, 314, 423, 635, 739, 1342, 1543
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	5 cut(s)	446, 1018, 1177, 1274, 1443
TaqI	TCGA	8 cut(s)	171, 222, 591, 648, 1060, 1186, 1197, 1375
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	2 cut(s)	8, 243
TfiI	GAWTC	4 cut(s)	288, 572, 1148, 1249
Tru1I	TTAA	6 cut(s)	89, 936, 1130, 1308, 1433, 1552
Tru9I	TTAA	6 cut(s)	89, 936, 1130, 1308, 1433, 1552
TscAI	CASTG	2 cut(s)	1000, 1158
TseFI	GTSAC	3 cut(s)	446, 467, 1214
TseI	GCWGC	4 cut(s)	391, 654, 943, 1364
Tsp45I	GTSAC	3 cut(s)	446, 467, 1214
TspDTI	ATGAA	6 cut(s)	280, 478, 972, 1002, 1161, 1342
TspGWI	ACGGA	2 cut(s)	344, 656
TspRI	CASTG	2 cut(s)	1000, 1158
VpaK11BI	GGWCC	1 cut(s)	1370
XceI	RCATGY	2 cut(s)	214, 218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1132
XmnI	GAANNNNTTC	2 cut(s)	287, 1056
XspI	CTAG	1 cut(s)	884
Zsp2I	ATGCAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.