FvH4_6g46370

DSBA-like thioredoxin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016376
Physical Location & Seq
Reverse (-)
35397139 .. 35399081
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46370.t1

Sequence Viewer

Length: 663 bp
ATGGCTGTAGCTCATCCCTTCCGAGTTCCAAAAAAGCCTTGCACAATCGACATCATCTCGGATCCGGTATCCCCTTGGTGCTTTATTGCCAAGAAAAATCTTGACCTGGCTCTACAGGAGGCTGATCATCTCTACGAGTTTGAGCTCCGGTGGCATCCATTTCAAACTGATCCTGATATCCCCAAGGAAGGCATTGATAAGAAGAAGCATTCTGAGGAAAAGCATGGCTTAGCTCAAATATCTGAAACTGTGGAAATGCGTATAGGAGATATTTTTAGGATGTCATACGATGGAATCGAATACAAACTTTCCGGAATCATGGGAAATCCTCTAGATTATCACAGGCTCATATATTTTGCTGGGGAACAAGATCATGATATGCAACATGATCTTGTGGATGAGATATTGCTTGGATACTTCACAGAGGAAAAGGACATTGCGGACAGGGAATATCTTGTGGAATGTGCTGGTAAGATTGGTATAGAAGGGGCAGCAGAGTTTCTTGAAGACCCTAACAATGGTCTCAAAGAGGTGACCGAAGAGCTCGAGAAGTACTCAGGAACAAAACAAATCCCATATTACGTGTTTAATGGAAAGGTGAACTGCGTCGGTGCTCAGCCGATGGAAGTGTTTTTGAGAGCTTTCGAAGCAGCCACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSBA

Protein Analysis

221

Amino Acids

25.19

Weight (kDa)

4.83

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSBA PF01323 15 - 215 3.4e-22 DSBA-like thioredoxin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 311
AciI CCGC 1 cut(s) 440
AclWI GGATC 3 cut(s) 56, 69, 164
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 2 cut(s) 188, 518
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 2 cut(s) 164, 506
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 5 cut(s) 11, 145, 233, 544, 641
AluI AGCT 5 cut(s) 11, 145, 233, 544, 641
Alw21I GWGCWC 3 cut(s) 147, 546, 616
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 3 cut(s) 56, 69, 164
Ama87I CYCGRG 1 cut(s) 545
Aor13HI TCCGGA 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 491, 650
AsuHPI GGTGA 2 cut(s) 544, 610
AsuII TTCGAA 1 cut(s) 645
AvaI CYCGRG 1 cut(s) 545
BamHI GGATCC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 147, 546
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 3 cut(s) 147, 546, 616
BbvI GCAGC 1 cut(s) 503
BccI CCATC 2 cut(s) 284, 616
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 2 cut(s) 79, 407
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 2 cut(s) 6, 113
BfuI GTATCC 2 cut(s) 79, 407
BisI GCNGC 2 cut(s) 492, 651
BlpI GCTNAGC 2 cut(s) 229, 615
BlsI GCNGC 2 cut(s) 493, 652
BmcAI AGTACT 1 cut(s) 554
Bme1390I CCNGG 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 513
BplI GAGNNNNNCTC 2 cut(s) 539, 571
Bpu1102I GCTNAGC 2 cut(s) 229, 615
Bpu14I TTCGAA 1 cut(s) 645
BsaAI YACGTR 1 cut(s) 583
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 74, 183
BsaWI WCCGGW 3 cut(s) 64, 147, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 518
Bse3DI GCAATG 1 cut(s) 435
BseAI TCCGGA 1 cut(s) 311
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 74, 183
BseGI GGATG 4 cut(s) 13, 154, 285, 403
BseLI CCNNNNNNNGG 2 cut(s) 188, 518
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 204, 570, 629
BseXI GCAGC 1 cut(s) 503
BseYI CCCAGC 1 cut(s) 359
BsiHKAI GWGCWC 3 cut(s) 147, 546, 616
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 3 cut(s) 65, 148, 312
BslI CCNNNNNNNGG 2 cut(s) 188, 518
BsmAI GTCTC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 527
BsoBI CYCGRG 1 cut(s) 545
Bsp119I TTCGAA 1 cut(s) 645
Bsp1286I GDGCHC 3 cut(s) 147, 546, 616
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 5 cut(s) 61, 124, 169, 370, 388
Bsp1720I GCTNAGC 2 cut(s) 229, 615
BspACI CCGC 1 cut(s) 440
BspCNI CTCAG 3 cut(s) 205, 569, 628
BspEI TCCGGA 1 cut(s) 311
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 3 cut(s) 56, 69, 164
BspQI GCTCTTC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 645
BspTNI GGTCTC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 74, 183
BssMI GATC 5 cut(s) 61, 124, 169, 370, 388
BssT1I CCWWGG 2 cut(s) 74, 183
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 583
BstBI TTCGAA 1 cut(s) 645
BstDEI CTNAG 4 cut(s) 213, 229, 556, 615
BstEII GGTNACC 1 cut(s) 532
BstF5I GGATG 4 cut(s) 13, 154, 285, 403
BstKTI GATC 5 cut(s) 64, 127, 172, 373, 391
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 5 cut(s) 61, 124, 169, 370, 388
BstMWI GCNNNNNNNGC 2 cut(s) 151, 647
BstNI CCWGG 1 cut(s) 107
BstPI GGTNACC 1 cut(s) 532
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 2 cut(s) 6, 113
BstV1I GCAGC 1 cut(s) 503
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuI GTATCC 2 cut(s) 79, 407
BtsCI GGATG 4 cut(s) 13, 154, 285, 403
CciI TCATGA 1 cut(s) 373
CseI GACGC 1 cut(s) 595
Csp6I GTAC 1 cut(s) 553
CviAII CATG 4 cut(s) 224, 319, 374, 386
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 4 cut(s) 213, 229, 556, 615
DpnI GATC 5 cut(s) 63, 126, 171, 372, 390
DpnII GATC 5 cut(s) 61, 124, 169, 370, 388
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Ecl136II GAGCTC 2 cut(s) 145, 544
Eco130I CCWWGG 2 cut(s) 74, 183
Eco24I GRGCYC 2 cut(s) 147, 546
Eco31I GGTCTC 1 cut(s) 527
Eco32I GATATC 1 cut(s) 178
Eco53kI GAGCTC 2 cut(s) 145, 544
Eco88I CYCGRG 1 cut(s) 545
Eco91I GGTNACC 1 cut(s) 532
EcoICRI GAGCTC 2 cut(s) 145, 544
EcoO65I GGTNACC 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 105
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 74, 183
EcoT38I GRGCYC 2 cut(s) 147, 546
ErhI CCWWGG 2 cut(s) 74, 183
FaeI CATG 4 cut(s) 227, 322, 377, 389
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 4 cut(s) 223, 318, 373, 385
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 492, 651
FokI GGATG 3 cut(s) 141, 292, 410
FriOI GRGCYC 2 cut(s) 147, 546
Fsp4HI GCNGC 2 cut(s) 492, 651
FspBI CTAG 1 cut(s) 332
GluI GCNGC 2 cut(s) 492, 651
GsaI CCCAGC 1 cut(s) 363
HapII CCGG 3 cut(s) 65, 148, 312
HgaI GACGC 1 cut(s) 595
Hin1II CATG 4 cut(s) 227, 322, 377, 389
HinfI GANTC 2 cut(s) 294, 315
HpaII CCGG 3 cut(s) 65, 148, 312
HphI GGTGA 2 cut(s) 544, 610
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 4 cut(s) 23, 61, 214, 244
Hpy188III TCNNGA 8 cut(s) 101, 173, 312, 332, 374, 503, 547, 558
Hpy8I GTNNAC 1 cut(s) 601
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 3 cut(s) 28, 182, 479
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 2 cut(s) 42, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 647
HpyF3I CTNAG 4 cut(s) 213, 229, 556, 615
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 4 cut(s) 227, 322, 377, 389
Kpn2I TCCGGA 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 5 cut(s) 61, 124, 169, 370, 388
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 532
MalI GATC 5 cut(s) 63, 126, 171, 372, 390
MboI GATC 5 cut(s) 61, 124, 169, 370, 388
MboII GAAGA 3 cut(s) 214, 518, 551
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 3 cut(s) 147, 546, 616
MnlI CCTC 5 cut(s) 112, 208, 339, 418, 523
MroI TCCGGA 1 cut(s) 311
MseI TTAA 1 cut(s) 588
MspI CCGG 3 cut(s) 65, 148, 312
MspR9I CCNGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 151, 647
NdeII GATC 5 cut(s) 61, 124, 169, 370, 388
NlaIII CATG 4 cut(s) 227, 322, 377, 389
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 532
NspV TTCGAA 1 cut(s) 645
PaeR7I CTCGAG 1 cut(s) 545
PagI TCATGA 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 294, 315
PkrI GCNGC 2 cut(s) 493, 652
Ppu21I YACGTR 1 cut(s) 583
Psp124BI GAGCTC 2 cut(s) 147, 546
Psp6I CCWGG 1 cut(s) 105
PspEI GGTNACC 1 cut(s) 532
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 63
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
SacI GAGCTC 2 cut(s) 147, 546
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 2 cut(s) 492, 651
Sau3AI GATC 5 cut(s) 61, 124, 169, 370, 388
ScaI AGTACT 1 cut(s) 554
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 3 cut(s) 147, 546, 616
SetI ASST 9 cut(s) 13, 108, 147, 235, 534, 546, 585, 600, 643
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 2 cut(s) 6, 113
Sfr274I CTCGAG 1 cut(s) 545
SfuI TTCGAA 1 cut(s) 645
SlaI CTCGAG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SsiI CCGC 1 cut(s) 440
SspMI CTAG 1 cut(s) 332
SstI GAGCTC 2 cut(s) 147, 546
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 2 cut(s) 74, 183
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 585
TaqI TCGA 4 cut(s) 48, 297, 546, 645
TaqII GACCGA 1 cut(s) 551
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 2 cut(s) 294, 315
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 2 cut(s) 491, 650
Tsp45I GTSAC 1 cut(s) 532
XbaI TCTAGA 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 545
XspI CTAG 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.