RLG00000021496

DSBA-like thioredoxin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016376
Physical Location & Seq
Reverse (-)
75910208 .. 75911659
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021496

Sequence Viewer

Length: 663 bp
ATGGCTGCAAATCATCCCTTCCGAGTTCCGAAAAAGCCTTGCACAGTCGACATCATTTCGGATCCGGTATGCCCGTGGTGCTTTATAGGCAAGAAAAATCTTGACAAAGCTCTAGAGGAGGCTGACCCTCTGTACGTGTTTGAGCTCCGGTGGCATCCATTTCAAACTTATCCTGATATCCCCAAAGAAGGCATTGATAAGAAAAAACATTCTGAGGATAAGCATGGCAGCACTCATATATCCGAAGTTGTGGAAATGCGTATAGGAGATATTCTAAGAACTACCTACGATGCCCTTGAATACAAACTTTCCGGAATCATGGGAAATCCTGTAGATTATCACAGGCTTGTATATTTTGCTGGGGAACAGGATCATGATATGCAACATGATCTTGTGGATGAGATACTGCTTGGGTACTTCACAGAGGAAAAGGACATTGCAGACAGGGAATATCTTGTGGAATGTGCTGGTAAGATTGGCATAGAAGGGGCAGCAGAGTTTCTTGAAGACCCTAACAATGGGCTCAATGAGGTCACTGAAGATCTTAAGAAGTACTCGGGAACAAAACAAGTCCCATATTACGTGTTTAATGGAAAGGTGGACTGCGTCGGTGCTCAGCCGTCTGAGGTGTTCATGAGAGCTTTCGAAGCAGCCACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSBA

Protein Analysis

221

Amino Acids

25.05

Weight (kDa)

4.92

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSBA PF01323 15 - 214 6.5e-21 DSBA-like thioredoxin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 311
AclWI GGATC 3 cut(s) 56, 69, 378
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 3 cut(s) 134, 416, 554
AfiI CCNNNNNNNGG 2 cut(s) 188, 518
AflII CTTAAG 1 cut(s) 545
AflIII ACRYGT 2 cut(s) 135, 582
AgsI TTSAA 3 cut(s) 164, 299, 506
AluBI AGCT 3 cut(s) 110, 145, 641
AluI AGCT 3 cut(s) 110, 145, 641
Alw21I GWGCWC 2 cut(s) 147, 616
AlwI GGATC 3 cut(s) 56, 69, 378
Ama87I CYCGRG 1 cut(s) 556
Aor13HI TCCGGA 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 5, 228, 491, 650
AsuII TTCGAA 1 cut(s) 645
AvaI CYCGRG 1 cut(s) 556
BamHI GGATCC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 147, 525
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 2 cut(s) 147, 616
BbvI GCAGC 2 cut(s) 240, 503
BceAI ACGGC 1 cut(s) 604
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 545
BglII AGATCT 1 cut(s) 541
BisI GCNGC 4 cut(s) 6, 229, 492, 651
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 4 cut(s) 7, 230, 493, 652
BmcAI AGTACT 1 cut(s) 554
BmeT110I CYCGRG 1 cut(s) 556
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 2 cut(s) 163, 280
BpiI GAAGAC 1 cut(s) 513
Bpu1102I GCTNAGC 1 cut(s) 615
Bpu14I TTCGAA 1 cut(s) 645
BsaAI YACGTR 2 cut(s) 136, 583
BsaJI CCNNGG 1 cut(s) 74
BsaWI WCCGGW 3 cut(s) 64, 147, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 518
Bse3DI GCAATG 1 cut(s) 435
BseAI TCCGGA 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 3 cut(s) 13, 154, 403
BseLI CCNNNNNNNGG 2 cut(s) 188, 518
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 204, 615, 629
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 2 cut(s) 240, 503
BseYI CCCAGC 1 cut(s) 359
BsiHKAI GWGCWC 2 cut(s) 147, 616
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 3 cut(s) 65, 148, 312
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 2 cut(s) 188, 518
BsmFI GGGAC 1 cut(s) 557
BsoBI CYCGRG 1 cut(s) 556
Bsp119I TTCGAA 1 cut(s) 645
Bsp1286I GDGCHC 3 cut(s) 147, 525, 616
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 4 cut(s) 61, 370, 388, 541
Bsp1720I GCTNAGC 1 cut(s) 615
BspCNI CTCAG 3 cut(s) 205, 616, 628
BspEI TCCGGA 1 cut(s) 311
BspHI TCATGA 2 cut(s) 373, 633
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 3 cut(s) 56, 69, 378
BspT104I TTCGAA 1 cut(s) 645
BspTI CTTAAG 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 4 cut(s) 61, 370, 388, 541
Bst4CI ACNGT 1 cut(s) 46
BstAFI CTTAAG 1 cut(s) 545
BstBAI YACGTR 2 cut(s) 136, 583
BstBI TTCGAA 1 cut(s) 645
BstDEI CTNAG 4 cut(s) 213, 275, 615, 624
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 3 cut(s) 13, 154, 403
BstKTI GATC 4 cut(s) 64, 373, 391, 544
BstMBI GATC 4 cut(s) 61, 370, 388, 541
BstMWI GCNNNNNNNGC 4 cut(s) 78, 87, 151, 647
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 240, 503
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 2 cut(s) 61, 541
BstYI RGATCY 2 cut(s) 61, 541
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 3 cut(s) 13, 154, 403
BtsIMutI CAGTG 1 cut(s) 534
CciI TCATGA 2 cut(s) 373, 633
CseI GACGC 1 cut(s) 595
Csp6I GTAC 3 cut(s) 133, 415, 553
CviAII CATG 5 cut(s) 224, 319, 374, 386, 634
CviQI GTAC 3 cut(s) 133, 415, 553
DdeI CTNAG 4 cut(s) 213, 275, 615, 624
DpnI GATC 4 cut(s) 63, 372, 390, 543
DpnII GATC 4 cut(s) 61, 370, 388, 541
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 2 cut(s) 147, 525
Eco32I GATATC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 556
EcoICRI GAGCTC 1 cut(s) 145
EcoRV GATATC 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 147, 525
FaeI CATG 5 cut(s) 227, 322, 377, 389, 637
FaqI GGGAC 1 cut(s) 557
FatI CATG 5 cut(s) 223, 318, 373, 385, 633
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 6, 229, 492, 651
FokI GGATG 2 cut(s) 141, 410
FriOI GRGCYC 2 cut(s) 147, 525
Fsp4HI GCNGC 4 cut(s) 6, 229, 492, 651
FspBI CTAG 1 cut(s) 113
GluI GCNGC 4 cut(s) 6, 229, 492, 651
GsaI CCCAGC 1 cut(s) 363
HapII CCGG 3 cut(s) 65, 148, 312
HgaI GACGC 1 cut(s) 595
Hin1II CATG 5 cut(s) 227, 322, 377, 389, 637
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 1 cut(s) 315
HpaII CCGG 3 cut(s) 65, 148, 312
Hpy166II GTNNAC 2 cut(s) 49, 601
Hpy188I TCNGA 6 cut(s) 23, 30, 61, 214, 244, 625
Hpy188III TCNNGA 8 cut(s) 101, 113, 173, 312, 374, 503, 558, 634
Hpy8I GTNNAC 2 cut(s) 49, 601
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 3 cut(s) 28, 182, 479
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 2 cut(s) 135, 582
HpyCH4V TGCA 4 cut(s) 8, 42, 382, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 87, 151, 647
HpyF3I CTNAG 4 cut(s) 213, 275, 615, 624
HpySE526I ACGT 2 cut(s) 135, 582
Hsp92II CATG 5 cut(s) 227, 322, 377, 389, 637
Kpn2I TCCGGA 1 cut(s) 311
Kzo9I GATC 4 cut(s) 61, 370, 388, 541
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 2 cut(s) 240, 503
LweI GCATC 2 cut(s) 163, 280
MaeI CTAG 1 cut(s) 113
MaeII ACGT 2 cut(s) 135, 582
MaeIII GTNAC 1 cut(s) 532
MalI GATC 4 cut(s) 63, 372, 390, 543
MboI GATC 4 cut(s) 61, 370, 388, 541
MboII GAAGA 2 cut(s) 518, 551
MflI RGATCY 2 cut(s) 61, 541
MhlI GDGCHC 3 cut(s) 147, 525, 616
MnlI CCTC 7 cut(s) 109, 112, 138, 208, 418, 523, 619
MroI TCCGGA 1 cut(s) 311
MseI TTAA 2 cut(s) 546, 588
MspCI CTTAAG 1 cut(s) 545
MspI CCGG 3 cut(s) 65, 148, 312
MwoI GCNNNNNNNGC 4 cut(s) 78, 87, 151, 647
NdeII GATC 4 cut(s) 61, 370, 388, 541
NlaIII CATG 5 cut(s) 227, 322, 377, 389, 637
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 532
NspV TTCGAA 1 cut(s) 645
PagI TCATGA 2 cut(s) 373, 633
PfeI GAWTC 1 cut(s) 315
PflFI GACNNNGTC 1 cut(s) 605
PkrI GCNGC 4 cut(s) 7, 230, 493, 652
Ppu21I YACGTR 2 cut(s) 136, 583
Psp124BI GAGCTC 1 cut(s) 147
PspFI CCCAGC 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 63
PsuI RGATCY 2 cut(s) 61, 541
PsyI GACNNNGTC 1 cut(s) 605
RsaI GTAC 3 cut(s) 134, 416, 554
RsaNI GTAC 3 cut(s) 133, 415, 553
SacI GAGCTC 1 cut(s) 147
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 546, 588
SatI GCNGC 4 cut(s) 6, 229, 492, 651
Sau3AI GATC 4 cut(s) 61, 370, 388, 541
ScaI AGTACT 1 cut(s) 554
SduI GDGCHC 3 cut(s) 147, 525, 616
SetI ASST 9 cut(s) 112, 138, 147, 287, 534, 585, 600, 630, 643
SfaNI GCATC 2 cut(s) 163, 280
SfcI CTRYAG 1 cut(s) 330
SfuI TTCGAA 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SspMI CTAG 1 cut(s) 113
SstI GAGCTC 1 cut(s) 147
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 2 cut(s) 138, 585
TaqI TCGA 2 cut(s) 48, 645
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 2 cut(s) 546, 588
Tru9I TTAA 2 cut(s) 546, 588
TscAI CASTG 1 cut(s) 541
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 4 cut(s) 5, 228, 491, 650
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 1 cut(s) 622
TspRI CASTG 1 cut(s) 541
Tth111I GACNNNGTC 1 cut(s) 605
Vha464I CTTAAG 1 cut(s) 545
XbaI TCTAGA 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 113
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.