Rmu_sc0006207.1_g000010

DSBA-like thioredoxin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006207.1
OG0016376
Physical Location & Seq
Reverse (-)
49520 .. 50306
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006207.1_g000010.1.cds

Sequence Viewer

Length: 327 bp
atgcaacatgatcttgtggatgagatactgcttgggtacttcacagaggaaaaggacattgcagacagggaatatcttgtggaatgtgctggtaagattggtatagaaggggcagcagagtttcttgaagatcctaacaatgggctcaatgagaggcgtgggaatgggacgagagttttcgcttcttacgcgatagtcactgaagatattaagaagtactcgggaacaaaacaagtcccatattacgtgtttaatggaaaggtggactgcgtcggtgctcagccgtctgaggtgttcatgagagctttcgaagcagccacaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSBA

Protein Analysis

108

Amino Acids

12.06

Weight (kDa)

4.66

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AclWI GGATC 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 2 cut(s) 38, 218
AfiI CCNNNNNNNGG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 113, 314
AsuII TTCGAA 1 cut(s) 309
AvaI CYCGRG 1 cut(s) 220
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 268
BisI GCNGC 2 cut(s) 114, 315
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 2 cut(s) 115, 316
BmcAI AGTACT 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 220
Bpu1102I GCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 309
BsaAI YACGTR 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 57
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 279, 293
BseXI GCAGC 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 220
BslFI GGGAC 2 cut(s) 181, 221
BslI CCNNNNNNNGG 1 cut(s) 140
BsmFI GGGAC 2 cut(s) 181, 221
BsoBI CYCGRG 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 309
Bsp1286I GDGCHC 2 cut(s) 147, 280
Bsp143I GATC 2 cut(s) 10, 130
Bsp1720I GCTNAGC 1 cut(s) 279
BspCNI CTCAG 2 cut(s) 280, 292
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 297
BspPI GGATC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 57
BssMI GATC 2 cut(s) 10, 130
BstBAI YACGTR 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 279, 288
BstF5I GGATG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 2 cut(s) 13, 133
BstMBI GATC 2 cut(s) 10, 130
BstMWI GCNNNNNNNGC 2 cut(s) 188, 311
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 198
CciI TCATGA 1 cut(s) 297
CseI GACGC 1 cut(s) 259
Csp6I GTAC 2 cut(s) 37, 217
CviAII CATG 2 cut(s) 8, 298
CviJI RGCY 4 cut(s) 145, 283, 305, 317
CviKI_1 RGCY 4 cut(s) 145, 283, 305, 317
CviQI GTAC 2 cut(s) 37, 217
DdeI CTNAG 2 cut(s) 279, 288
DpnI GATC 2 cut(s) 12, 132
DpnII GATC 2 cut(s) 10, 130
Eco24I GRGCYC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 2 cut(s) 11, 301
FaiI YATR 4 cut(s) 9, 104, 241, 299
FaqI GGGAC 2 cut(s) 181, 221
FatI CATG 2 cut(s) 7, 297
Fnu4HI GCNGC 2 cut(s) 114, 315
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 114, 315
GluI GCNGC 2 cut(s) 114, 315
HgaI GACGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 11, 301
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 3 cut(s) 125, 222, 298
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 4, 62
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 311
HpyF3I CTNAG 2 cut(s) 279, 288
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 11, 301
Kzo9I GATC 2 cut(s) 10, 130
LpnPI CCDG 2 cut(s) 52, 75
Lsp1109I GCAGC 1 cut(s) 125
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 12, 132
MboI GATC 2 cut(s) 10, 130
MboII GAAGA 2 cut(s) 140, 215
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 2 cut(s) 147, 280
MnlI CCTC 3 cut(s) 40, 147, 283
MseI TTAA 2 cut(s) 210, 252
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 188, 311
NdeII GATC 2 cut(s) 10, 130
NlaIII CATG 2 cut(s) 11, 301
NmuCI GTSAC 1 cut(s) 196
NspV TTCGAA 1 cut(s) 309
PagI TCATGA 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 2 cut(s) 115, 316
Ppu21I YACGTR 1 cut(s) 247
PsuI RGATCY 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 2 cut(s) 38, 218
RsaNI GTAC 2 cut(s) 37, 217
SaqAI TTAA 2 cut(s) 210, 252
SatI GCNGC 2 cut(s) 114, 315
Sau3AI GATC 2 cut(s) 10, 130
ScaI AGTACT 1 cut(s) 218
SduI GDGCHC 2 cut(s) 147, 280
SetI ASST 4 cut(s) 249, 264, 294, 307
SfuI TTCGAA 1 cut(s) 309
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 309
TatI WGTACW 1 cut(s) 216
Tru1I TTAA 2 cut(s) 210, 252
Tru9I TTAA 2 cut(s) 210, 252
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 113, 314
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 286
TspRI CASTG 1 cut(s) 205
Tth111I GACNNNGTC 1 cut(s) 269
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.