Rmu_co8477167.1_g000002

DSBA-like thioredoxin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8477167.1
OG0016376
Physical Location & Seq
Forward (+)
1835 .. 2119
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8477167.1_g000002.1.cds

Sequence Viewer

Length: 285 bp
atggctgcaaatcatcccttccgagttccgaaaaagccttgcacagtcgacatcatttcggatccggtatgcccgtggtgctttataggcaagaaaaatcttgacaaagctctagaggaggctgaccctctgtacgtgtttgagctccggtggcatccatttcaactttatcctgatatccctaaagaaggcattgataagaaaaagcattctgaggataagcatggcagcactcatatatcagaagttgtggaaatgcgtataggagatgtattaaatcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSBA

Protein Analysis

94

Amino Acids

10.85

Weight (kDa)

6.28

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AclWI GGATC 2 cut(s) 56, 69
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 2 cut(s) 110, 145
AluI AGCT 2 cut(s) 110, 145
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 2 cut(s) 56, 69
ApeKI GCWGC 2 cut(s) 5, 228
BamHI GGATCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 240
BfaI CTAG 1 cut(s) 113
BisI GCNGC 2 cut(s) 6, 229
BlsI GCNGC 2 cut(s) 7, 230
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 1 cut(s) 163
BsaAI YACGTR 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 74
BsaWI WCCGGW 2 cut(s) 64, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 2 cut(s) 13, 154
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 2 cut(s) 65, 148
BslI CCNNNNNNNGG 1 cut(s) 188
BsmI GAATGC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 2 cut(s) 56, 69
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 74
BstENI CCTNNNNNAGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 13, 154
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 78, 87, 151
BstV1I GCAGC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 13, 154
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 224
CviJI RGCY 5 cut(s) 5, 37, 110, 122, 145
CviKI_1 RGCY 5 cut(s) 5, 37, 110, 122, 145
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 147
Eco32I GATATC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoRV GATATC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 1 cut(s) 227
FaiI YATR 6 cut(s) 70, 86, 225, 237, 239, 263
FatI CATG 1 cut(s) 223
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 6, 229
FokI GGATG 1 cut(s) 141
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 6, 229
FspBI CTAG 1 cut(s) 113
GluI GCNGC 2 cut(s) 6, 229
HapII CCGG 2 cut(s) 65, 148
Hin1II CATG 1 cut(s) 227
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HpaII CCGG 2 cut(s) 65, 148
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 5 cut(s) 23, 30, 61, 214, 244
Hpy188III TCNNGA 3 cut(s) 101, 113, 173
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 28, 182
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 8, 42
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 87, 151
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 3 cut(s) 78, 161, 186
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 135
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 147
MnlI CCTC 4 cut(s) 109, 112, 138, 208
MseI TTAA 2 cut(s) 275, 283
MspI CCGG 2 cut(s) 65, 148
Mva1269I GAATGC 1 cut(s) 208
MwoI GCNNNNNNNGC 3 cut(s) 78, 87, 151
NdeII GATC 1 cut(s) 61
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 63
PctI GAATGC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 7, 230
Ppu21I YACGTR 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 63
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 147
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 275, 283
SatI GCNGC 2 cut(s) 6, 229
Sau3AI GATC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 147
SetI ASST 3 cut(s) 112, 138, 147
SfaNI GCATC 1 cut(s) 163
SspMI CTAG 1 cut(s) 113
SstI GAGCTC 1 cut(s) 147
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 48
Tru1I TTAA 2 cut(s) 275, 283
Tru9I TTAA 2 cut(s) 275, 283
TseI GCWGC 2 cut(s) 5, 228
XagI CCTNNNNNAGG 1 cut(s) 186
XbaI TCTAGA 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.