Rmu_co8433777.1_g000001

DSBA-like thioredoxin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8433777.1
OG0016376
Physical Location & Seq
Forward (+)
1 .. 980
980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8433777.1_g000001.1.cds

Sequence Viewer

Length: 385 bp
gggagatcctctagattatcacaggcttgtatattttgctggggaacaggatcatgatatgcaacatgatcttgtggatgagatactgcttgggtacttcacagaggaaaaggacattgcagacagggaatatcttgtggaatgtgctggtaagattggtatagaaggggcagcagagtttcttgaagatcctaacaatgggctcaatgagaggcgtgggaatgggacgagagttttcgcttcttacgcgatagtcactgaagatattaagaagtactcgggaacaaaacaagtcccatattacgtgtttaatggaaaggtggactgcgtcggtgctcagccgtctgaggtgttcatgagagctttcgaagcagccacaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSBA

Protein Analysis

127

Amino Acids

14.29

Weight (kDa)

4.58

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 249
AclWI GGATC 2 cut(s) 58, 183
AcuI CTGAAG 1 cut(s) 280
AfaI GTAC 2 cut(s) 96, 276
AfiI CCNNNNNNNGG 1 cut(s) 198
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 1 cut(s) 186
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
Alw21I GWGCWC 1 cut(s) 338
AlwI GGATC 2 cut(s) 58, 183
Ama87I CYCGRG 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 171, 372
AsuII TTCGAA 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 278
BanII GRGCYC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 326
BfaI CTAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 172, 373
BlpI GCTNAGC 1 cut(s) 337
BlsI GCNGC 2 cut(s) 173, 374
BmcAI AGTACT 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 278
Bpu1102I GCTNAGC 1 cut(s) 337
Bpu14I TTCGAA 1 cut(s) 367
BsaAI YACGTR 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 115
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 337, 351
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 278
BslFI GGGAC 2 cut(s) 239, 279
BslI CCNNNNNNNGG 1 cut(s) 198
BsmFI GGGAC 2 cut(s) 239, 279
BsoBI CYCGRG 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 205, 338
Bsp143I GATC 4 cut(s) 5, 50, 68, 188
Bsp1720I GCTNAGC 1 cut(s) 337
BspCNI CTCAG 2 cut(s) 338, 350
BspFNI CGCG 1 cut(s) 249
BspHI TCATGA 2 cut(s) 53, 355
BspPI GGATC 2 cut(s) 58, 183
BspT104I TTCGAA 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 115
BssMI GATC 4 cut(s) 5, 50, 68, 188
BstBAI YACGTR 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 367
BstDEI CTNAG 2 cut(s) 337, 346
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 4 cut(s) 8, 53, 71, 191
BstMBI GATC 4 cut(s) 5, 50, 68, 188
BstMWI GCNNNNNNNGC 2 cut(s) 246, 369
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 5, 188
BstYI RGATCY 2 cut(s) 5, 188
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 256
CciI TCATGA 2 cut(s) 53, 355
CseI GACGC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 95, 275
CviAII CATG 3 cut(s) 54, 66, 356
CviJI RGCY 5 cut(s) 26, 203, 341, 363, 375
CviKI_1 RGCY 5 cut(s) 26, 203, 341, 363, 375
CviQI GTAC 2 cut(s) 95, 275
DdeI CTNAG 2 cut(s) 337, 346
DpnI GATC 4 cut(s) 7, 52, 70, 190
DpnII GATC 4 cut(s) 5, 50, 68, 188
Eco24I GRGCYC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 205
FaeI CATG 3 cut(s) 57, 69, 359
FaiI YATR 7 cut(s) 32, 55, 60, 67, 162, 299, 357
FaqI GGGAC 2 cut(s) 239, 279
FatI CATG 3 cut(s) 53, 65, 355
Fnu4HI GCNGC 2 cut(s) 172, 373
FokI GGATG 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 172, 373
FspBI CTAG 1 cut(s) 12
GluI GCNGC 2 cut(s) 172, 373
GsaI CCCAGC 1 cut(s) 43
HgaI GACGC 1 cut(s) 317
Hin1II CATG 3 cut(s) 57, 69, 359
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 347
Hpy188III TCNNGA 5 cut(s) 12, 54, 183, 280, 356
Hpy8I GTNNAC 1 cut(s) 323
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 62, 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 369
HpyF3I CTNAG 2 cut(s) 337, 346
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 3 cut(s) 57, 69, 359
Kzo9I GATC 4 cut(s) 5, 50, 68, 188
LpnPI CCDG 5 cut(s) 8, 25, 33, 110, 133
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 254
MalI GATC 4 cut(s) 7, 52, 70, 190
MboI GATC 4 cut(s) 5, 50, 68, 188
MboII GAAGA 2 cut(s) 198, 273
MflI RGATCY 2 cut(s) 5, 188
MhlI GDGCHC 2 cut(s) 205, 338
MnlI CCTC 4 cut(s) 19, 98, 205, 341
MseI TTAA 2 cut(s) 268, 310
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 246, 369
NdeII GATC 4 cut(s) 5, 50, 68, 188
NlaIII CATG 3 cut(s) 57, 69, 359
NmuCI GTSAC 1 cut(s) 254
NspV TTCGAA 1 cut(s) 367
PagI TCATGA 2 cut(s) 53, 355
PflFI GACNNNGTC 1 cut(s) 327
PkrI GCNGC 2 cut(s) 173, 374
Ppu21I YACGTR 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 39
PsuI RGATCY 2 cut(s) 5, 188
PsyI GACNNNGTC 1 cut(s) 327
RsaI GTAC 2 cut(s) 96, 276
RsaNI GTAC 2 cut(s) 95, 275
SaqAI TTAA 2 cut(s) 268, 310
SatI GCNGC 2 cut(s) 172, 373
Sau3AI GATC 4 cut(s) 5, 50, 68, 188
ScaI AGTACT 1 cut(s) 276
SduI GDGCHC 2 cut(s) 205, 338
SetI ASST 4 cut(s) 307, 322, 352, 365
SfuI TTCGAA 1 cut(s) 367
SspMI CTAG 1 cut(s) 12
TaiI ACGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 367
TatI WGTACW 1 cut(s) 274
Tru1I TTAA 2 cut(s) 268, 310
Tru9I TTAA 2 cut(s) 268, 310
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 2 cut(s) 171, 372
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 1 cut(s) 263
Tth111I GACNNNGTC 1 cut(s) 327
XbaI TCTAGA 1 cut(s) 11
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.