FvH4_6g46480

NADH-ubiquinone reductase complex 1 MLRQ subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015346
Physical Location & Seq
Forward (+)
35450237 .. 35452361
2125 bp
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UTR
Exon/CDS
Intron
FvH4_6g46480.t1

Sequence Viewer

Length: 270 bp
ATGGGGCGTTGGATTAGGCCTGAGGTTTACCCGCTAATGGCTGCGATGACATTTGTGACAAGTTTGTGCGTATTTCAGCTTACAAGGAATGTAATCCTCAACCCGGATGTCAGAGTGAACAAAGCTCACCGGAGAATGGCGGTGCTGGATAACGAAGAAGAGGGAGAGAGGTATGCCGAACATGGCCTCCGGAAGTACCTCCGAACCCGCCGGCCGGAGGTCATGCCTACCATCAACCACTTCTTCTCTCATTCTCAAGAAGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B12D

Protein Analysis

90

Amino Acids

10.6

Weight (kDa)

9.42

Isoelectric Point (pI)

64.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B12D PF06522 4 - 58 6.9e-21 NADH-ubiquinone reductase complex 1 MLRQ subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29970 AT3G29970 AT3G29970
fragaria_vesca FvH4_6g46480
malus_domestica MD09G1073000.v1.1 MD17G1064400.v1.1
prunus_persica Prupe.3G250200_v2.0.a1
pyrus_communis pycom17g06450
rosa_chinensis RchiOBHm_Chr2g0165051
rosa_multiflora Rmu_sc0001097.1_g000024
rosa_roxburghii Rroxscaffold_2G00086090
rosa_rugosa Rorug02G0512400
rosa_samantha Rh2AG580600 Rh2CG562500 Rh2DG602000
rosa_wichuraiana Rw2G048200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 3 cut(s) 32, 140, 208
AcoI YGGCCR 1 cut(s) 212
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 5 cut(s) 37, 103, 136, 214, 217
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 2 cut(s) 79, 125
AluI AGCT 2 cut(s) 79, 125
Aor13HI TCCGGA 1 cut(s) 189
AoxI GGCC 3 cut(s) 17, 184, 212
ApeKI GCWGC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 21
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 239
BcnI CCSGG 1 cut(s) 104
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 104
BsaWI WCCGGW 2 cut(s) 129, 189
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 103, 136, 214, 217
Bse118I RCCGGY 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 189
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 5 cut(s) 37, 103, 136, 214, 217
BseMII CTCAG 1 cut(s) 12
BseX3I CGGCCG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 28
Bsh1285I CGRYCG 1 cut(s) 215
BshFI GGCC 3 cut(s) 19, 186, 214
BsiEI CGRYCG 1 cut(s) 215
BsiSI CCGG 5 cut(s) 104, 130, 190, 211, 215
BslI CCNNNNNNNGG 5 cut(s) 37, 103, 136, 214, 217
BsnI GGCC 3 cut(s) 19, 186, 214
Bsp13I TCCGGA 1 cut(s) 189
BspACI CCGC 3 cut(s) 32, 140, 208
BspANI GGCC 3 cut(s) 19, 186, 214
BspCNI CTCAG 1 cut(s) 13
BspEI TCCGGA 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 112
BstMCI CGRYCG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 28
BstZI CGGCCG 1 cut(s) 212
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 3 cut(s) 19, 186, 214
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 210
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 182, 223
CviJI RGCY 6 cut(s) 19, 41, 79, 125, 186, 214
CviKI_1 RGCY 6 cut(s) 19, 41, 79, 125, 186, 214
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 212
EagI CGGCCG 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EclXI CGGCCG 1 cut(s) 212
Eco147I AGGCCT 1 cut(s) 19
Eco52I CGGCCG 1 cut(s) 212
Eco81I CCTNAGG 1 cut(s) 21
FaeI CATG 2 cut(s) 185, 226
FaiI YATR 3 cut(s) 174, 183, 224
FatI CATG 2 cut(s) 181, 222
FauI CCCGC 2 cut(s) 39, 215
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 3 cut(s) 19, 186, 214
HapII CCGG 5 cut(s) 104, 130, 190, 211, 215
Hin1II CATG 2 cut(s) 185, 226
HpaII CCGG 5 cut(s) 104, 130, 190, 211, 215
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 28, 118
Hpy188I TCNGA 2 cut(s) 113, 203
Hpy188III TCNNGA 2 cut(s) 190, 257
Hpy8I GTNNAC 2 cut(s) 28, 118
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 2 cut(s) 185, 226
Kpn2I TCCGGA 1 cut(s) 189
KroI GCCGGC 1 cut(s) 210
KroNI GCCGGC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 33, 117, 131, 143, 203, 224, 228
Lsp1109I GCAGC 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 3 cut(s) 167, 170, 235
MnlI CCTC 7 cut(s) 16, 107, 154, 162, 197, 209, 211
MroI TCCGGA 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 210
MspI CCGG 5 cut(s) 104, 130, 190, 211, 215
MspR9I CCNGG 1 cut(s) 104
NaeI GCCGGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 104
NgoMIV GCCGGC 1 cut(s) 210
NlaIII CATG 2 cut(s) 185, 226
NmuCI GTSAC 1 cut(s) 55
PceI AGGCCT 1 cut(s) 19
PdiI GCCGGC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 43
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SatI GCNGC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 104
SetI ASST 6 cut(s) 27, 81, 127, 173, 201, 222
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 3 cut(s) 32, 140, 208
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.