Rh2DG602000

NADH-ubiquinone reductase complex 1 MLRQ subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015346
Physical Location & Seq
Forward (+)
83380502 .. 83381637
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG602000.1

Sequence Viewer

Length: 270 bp
ATGGGTCGTTGGGTTAGGCCTGAGGTATACCCGCTAATGGCTGCGATGACATTTGTGACAAGCTTGTGCGTATTTCAGCTTACAAGGAATGTATTCCTCAACCCAGATGTCAGAGTGAACAAAGCTCACCGGAGAATGGCGGTGCTCGAAAACGAAGAAGAGGGAGAGAAGTATGCCGAACATGGCCTCCGGAAATTCCTCCGGACTCGCCCACCGGAGATCATGCCTACAATCAACCACTTCTTTTCTAATTCTCAAGAAGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B12D

Protein Analysis

89

Amino Acids

10.52

Weight (kDa)

8.98

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B12D PF06522 4 - 58 3.5e-21 NADH-ubiquinone reductase complex 1 MLRQ subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29970 AT3G29970 AT3G29970
fragaria_vesca FvH4_6g46480
malus_domestica MD09G1073000.v1.1 MD17G1064400.v1.1
prunus_persica Prupe.3G250200_v2.0.a1
pyrus_communis pycom17g06450
rosa_chinensis RchiOBHm_Chr2g0165051
rosa_multiflora Rmu_sc0001097.1_g000024
rosa_roxburghii Rroxscaffold_2G00086090
rosa_rugosa Rorug02G0512400
rosa_samantha Rh2AG580600 Rh2CG562500 Rh2DG602000
rosa_wichuraiana Rw2G048200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AccIII TCCGGA 2 cut(s) 189, 201
AciI CCGC 2 cut(s) 32, 140
AcsI RAATTY 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 37, 136
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 3 cut(s) 63, 79, 125
AluI AGCT 3 cut(s) 63, 79, 125
Alw21I GWGCWC 1 cut(s) 147
Aor13HI TCCGGA 2 cut(s) 189, 201
AoxI GGCC 2 cut(s) 17, 184
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 240
BsaWI WCCGGW 4 cut(s) 129, 189, 201, 214
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 136
Bse21I CCTNAGG 1 cut(s) 21
BseAI TCCGGA 2 cut(s) 189, 201
BseLI CCNNNNNNNGG 2 cut(s) 37, 136
BseMII CTCAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 19, 186
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 4 cut(s) 130, 190, 202, 215
BslI CCNNNNNNNGG 2 cut(s) 37, 136
BsnI GGCC 2 cut(s) 19, 186
Bsp1286I GDGCHC 1 cut(s) 147
Bsp13I TCCGGA 2 cut(s) 189, 201
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 2 cut(s) 32, 140
BspANI GGCC 2 cut(s) 19, 186
BspCNI CTCAG 1 cut(s) 13
BspEI TCCGGA 2 cut(s) 189, 201
BssMI GATC 1 cut(s) 219
BssNAI GTATAC 1 cut(s) 28
Bst1107I GTATAC 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 21
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 28
BstZ17I GTATAC 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 2 cut(s) 19, 186
BtgZI GCGATG 1 cut(s) 59
CviAII CATG 2 cut(s) 182, 223
CviJI RGCY 6 cut(s) 19, 41, 63, 79, 125, 186
CviKI_1 RGCY 6 cut(s) 19, 41, 63, 79, 125, 186
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 19
Eco81I CCTNAGG 1 cut(s) 21
FaeI CATG 2 cut(s) 185, 226
FaiI YATR 4 cut(s) 28, 174, 183, 224
FatI CATG 2 cut(s) 181, 222
FauI CCCGC 1 cut(s) 39
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 2 cut(s) 19, 186
HapII CCGG 4 cut(s) 130, 190, 202, 215
Hin1II CATG 2 cut(s) 185, 226
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 1 cut(s) 205
HpaII CCGG 4 cut(s) 130, 190, 202, 215
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 28, 118
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 3 cut(s) 190, 202, 257
Hpy8I GTNNAC 2 cut(s) 28, 118
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 2 cut(s) 185, 226
Kpn2I TCCGGA 2 cut(s) 189, 201
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 6 cut(s) 33, 117, 143, 203, 215, 228
Lsp1109I GCAGC 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 167, 170
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 2 cut(s) 194, 250
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 5 cut(s) 16, 107, 154, 197, 209
MroI TCCGGA 2 cut(s) 189, 201
MroXI GAANNNNTTC 1 cut(s) 92
MspI CCGG 4 cut(s) 130, 190, 202, 215
NdeII GATC 1 cut(s) 219
NlaIII CATG 2 cut(s) 185, 226
NmuCI GTSAC 1 cut(s) 55
PceI AGGCCT 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 219
SchI GAGTC 1 cut(s) 199
SduI GDGCHC 1 cut(s) 147
SetI ASST 4 cut(s) 27, 65, 81, 127
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 2 cut(s) 194, 250
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 2 cut(s) 32, 140
StuI AGGCCT 1 cut(s) 19
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 194, 250
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 55
XapI RAATTY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.