RchiOBHm_Chr2g0165051

NADH-ubiquinone reductase complex 1 MLRQ subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015346
Physical Location & Seq
Forward (+)
80062166 .. 80062595
430 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53303

Sequence Viewer

Length: 261 bp
ATGAACCATATTCAGGTATACCCGCTAATGGCTGCGATGACATTTGTGACAAGCTTGTGCGTATTTCAGCTTACAAGGAATGTATTCCTCAACCCAGATGTCAGAGTGAACAAAGCTCACCGGAGAATGGCAGTGCTCGAAAACGAAGAAGAGGGAGAGAAGTATGCCGAACATGGCCTTCGGAAATTCCTCCGGACTCGCCCACCGGAGATCATGCCTACCATCAACCACTTCTTCTCTAATTCTCAAGAAGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B12D

Protein Analysis

86

Amino Acids

10.13

Weight (kDa)

7.97

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B12D PF06522 3 - 55 8.1e-19 NADH-ubiquinone reductase complex 1 MLRQ subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29970 AT3G29970 AT3G29970
fragaria_vesca FvH4_6g46480
malus_domestica MD09G1073000.v1.1 MD17G1064400.v1.1
prunus_persica Prupe.3G250200_v2.0.a1
pyrus_communis pycom17g06450
rosa_chinensis RchiOBHm_Chr2g0165051
rosa_multiflora Rmu_sc0001097.1_g000024
rosa_roxburghii Rroxscaffold_2G00086090
rosa_rugosa Rorug02G0512400
rosa_samantha Rh2AG580600 Rh2CG562500 Rh2DG602000
rosa_wichuraiana Rw2G048200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 18
AccIII TCCGGA 1 cut(s) 192
AciI CCGC 1 cut(s) 23
AcsI RAATTY 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 13, 28, 127
AluBI AGCT 3 cut(s) 54, 70, 116
AluI AGCT 3 cut(s) 54, 70, 116
Alw21I GWGCWC 1 cut(s) 138
Aor13HI TCCGGA 1 cut(s) 192
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 230
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 231
BsaWI WCCGGW 3 cut(s) 120, 192, 205
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 28, 127
BseAI TCCGGA 1 cut(s) 192
BseLI CCNNNNNNNGG 3 cut(s) 13, 28, 127
BseXI GCAGC 1 cut(s) 19
BshFI GGCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 3 cut(s) 121, 193, 206
BslI CCNNNNNNNGG 3 cut(s) 13, 28, 127
BsnI GGCC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 138
Bsp13I TCCGGA 1 cut(s) 192
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 192
BssMI GATC 1 cut(s) 210
BssNAI GTATAC 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 144
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 19
BstZ17I GTATAC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 50
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
CviAII CATG 2 cut(s) 173, 214
CviJI RGCY 5 cut(s) 32, 54, 70, 116, 177
CviKI_1 RGCY 5 cut(s) 32, 54, 70, 116, 177
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
FaeI CATG 2 cut(s) 176, 217
FaiI YATR 5 cut(s) 9, 19, 165, 174, 215
FatI CATG 2 cut(s) 172, 213
FauI CCCGC 1 cut(s) 30
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 177
HapII CCGG 3 cut(s) 121, 193, 206
Hin1II CATG 2 cut(s) 176, 217
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 196
HpaII CCGG 3 cut(s) 121, 193, 206
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 19, 109
Hpy188I TCNGA 2 cut(s) 104, 183
Hpy188III TCNNGA 2 cut(s) 193, 248
Hpy8I GTNNAC 2 cut(s) 19, 109
HpyAV CCTTC 1 cut(s) 188
Hsp92II CATG 2 cut(s) 176, 217
Kpn2I TCCGGA 1 cut(s) 192
Kzo9I GATC 1 cut(s) 210
LpnPI CCDG 4 cut(s) 108, 134, 206, 219
Lsp1109I GCAGC 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 3 cut(s) 158, 161, 226
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 2 cut(s) 185, 241
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 3 cut(s) 98, 145, 200
MroI TCCGGA 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 83
MspI CCGG 3 cut(s) 121, 193, 206
NdeII GATC 1 cut(s) 210
NlaIII CATG 2 cut(s) 176, 217
NmuCI GTSAC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 210
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 138
SetI ASST 4 cut(s) 18, 56, 72, 118
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 2 cut(s) 185, 241
SsiI CCGC 1 cut(s) 23
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 185, 241
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 138
XapI RAATTY 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.