Rorug02G0512400

NADH-ubiquinone reductase complex 1 MLRQ subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002884
Physical Location & Seq
Reverse (-)
64303448 .. 64306313
2866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0512400.1

Sequence Viewer

Length: 501 bp
ATGAAAAGAAAACAAATGGTGGTAAGTGCTTTAAATTGTGCCAGGAGAGGTTGGGTCAACATAGATGTGGATACAATAGCCTGTGAATCATGTGGGGCACGCGTCCTGTTTTCTACTCCATCATCTTGGAATCAGCAGCAAGTTCAGAAGGCAGCTTTGGTATTTGGTTTAAAGCTAGACAATGGACATAAAATGCTTTGTCCATGGATTGACAATGCCTGTGATGAAATGCTGGCAGAGTTCCCGCCTACACCACCTCCAGTTTTAGTGGATAAATTTAGAGAGCGCTGCTCTGCGATTTTACAACTTCCAGTTCTTCCTGTGATATCTTCTTCAGCCATTGAGTACATGAAAAGCCCTCAGCTTGATCAATTTCTTGGACAGTCTTCGATATTTTTTGGCAATAGGTGTACTGAAATTTCTAGAATAGAACACTGTGATGATGAAGGCAGTGCAGAGTCTGAATTGATTTGTGAAGTCCTCTATTCCATATTCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B12D

Protein Analysis

166

Amino Acids

18.62

Weight (kDa)

5.02

Isoelectric Point (pI)

72.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC PF07967 4 - 107 9e-23 NuBaID N-terminal domain (aka zf-C3HC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 102
AciI CCGC 1 cut(s) 245
AcsI RAATTY 2 cut(s) 275, 417
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 2 cut(s) 347, 412
AfeI AGCGCT 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 100
AjnI CCWGG 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 3 cut(s) 155, 175, 364
AluI AGCT 3 cut(s) 155, 175, 364
AlwNI CAGNNNCTG 1 cut(s) 461
Aor51HI AGCGCT 1 cut(s) 287
ApeKI GCWGC 3 cut(s) 136, 152, 288
ApoI RAATTY 2 cut(s) 275, 417
AspLEI GCGC 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 148, 164, 275
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 43
BciVI GTATCC 1 cut(s) 64
BclI TGATCA 1 cut(s) 367
BfaI CTAG 2 cut(s) 176, 423
BfoI RGCGCY 1 cut(s) 289
BfuI GTATCC 1 cut(s) 64
BisI GCNGC 3 cut(s) 137, 153, 289
BlsI GCNGC 3 cut(s) 138, 154, 290
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bse1I ACTGG 2 cut(s) 260, 311
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 260, 311
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 3 cut(s) 148, 164, 275
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 1 cut(s) 367
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 1 cut(s) 102
BsrI ACTGG 2 cut(s) 260, 311
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 384, 437
BstC8I GCNNGC 2 cut(s) 100, 234
BstDEI CTNAG 1 cut(s) 360
BstDSI CCRYGG 1 cut(s) 203
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSLI GKGCMC 1 cut(s) 100
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 3 cut(s) 148, 164, 275
BstV2I GAAGAC 1 cut(s) 378
BstXI CCANNNNNNTGG 1 cut(s) 126
BsuI GTATCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 2 cut(s) 433, 457
Cac8I GCNNGC 2 cut(s) 100, 234
CaiI CAGNNNCTG 1 cut(s) 461
CfoI GCGC 1 cut(s) 288
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 346, 411
CviAII CATG 3 cut(s) 90, 204, 349
CviJI RGCY 6 cut(s) 80, 155, 175, 338, 357, 364
CviKI_1 RGCY 6 cut(s) 80, 155, 175, 338, 357, 364
CviQI GTAC 2 cut(s) 346, 411
DdeI CTNAG 1 cut(s) 360
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraI TTTAAA 2 cut(s) 33, 171
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 1 cut(s) 327
Eco47III AGCGCT 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 41
EcoRV GATATC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 93, 207, 352
FaiI YATR 6 cut(s) 62, 91, 189, 205, 350, 491
FatI CATG 3 cut(s) 89, 203, 348
FauI CCCGC 1 cut(s) 252
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 137, 153, 289
Fsp4HI GCNGC 3 cut(s) 137, 153, 289
FspBI CTAG 2 cut(s) 176, 423
GlaI GCGC 1 cut(s) 287
GluI GCNGC 3 cut(s) 137, 153, 289
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 289
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 288
Hin1II CATG 3 cut(s) 93, 207, 352
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 3 cut(s) 86, 130, 458
Hpy166II GTNNAC 2 cut(s) 58, 411
Hpy188I TCNGA 2 cut(s) 147, 463
Hpy188III TCNNGA 1 cut(s) 423
Hpy8I GTNNAC 2 cut(s) 58, 411
HpyAV CCTTC 2 cut(s) 142, 440
HpyCH4III ACNGT 2 cut(s) 384, 437
HpyCH4V TGCA 1 cut(s) 455
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 3 cut(s) 93, 207, 352
HspAI GCGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 1 cut(s) 367
LpnPI CCDG 9 cut(s) 28, 55, 94, 119, 218, 232, 273, 324, 333
Lsp1109I GCAGC 3 cut(s) 148, 164, 275
MaeI CTAG 2 cut(s) 176, 423
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 4 cut(s) 308, 321, 324, 378
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 5 cut(s) 34, 275, 371, 417, 464
MluI ACGCGT 1 cut(s) 100
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 4 cut(s) 41, 267, 369, 491
MseI TTAA 3 cut(s) 32, 170, 499
MslI CAYNNNNRTG 2 cut(s) 65, 438
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 102
NcoI CCATGG 1 cut(s) 203
NdeII GATC 1 cut(s) 367
NlaIII CATG 3 cut(s) 93, 207, 352
PfeI GAWTC 2 cut(s) 86, 130
PkrI GCNGC 3 cut(s) 138, 154, 290
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 461
RsaI GTAC 2 cut(s) 347, 412
RsaNI GTAC 2 cut(s) 346, 411
RseI CAYNNNNRTG 2 cut(s) 65, 438
SaqAI TTAA 3 cut(s) 32, 170, 499
SatI GCNGC 3 cut(s) 137, 153, 289
Sau3AI GATC 1 cut(s) 367
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 100
SetI ASST 6 cut(s) 52, 157, 177, 259, 366, 410
SmiMI CAYNNNNRTG 2 cut(s) 65, 438
Sse9I AATT 5 cut(s) 34, 275, 371, 417, 464
SsiI CCGC 1 cut(s) 245
SspMI CTAG 2 cut(s) 176, 423
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 384, 437
TaqI TCGA 1 cut(s) 389
TasI AATT 5 cut(s) 34, 275, 371, 417, 464
TatI WGTACW 2 cut(s) 345, 410
TfiI GAWTC 2 cut(s) 86, 130
Tru1I TTAA 3 cut(s) 32, 170, 499
Tru9I TTAA 3 cut(s) 32, 170, 499
TscAI CASTG 2 cut(s) 440, 457
TseI GCWGC 3 cut(s) 136, 152, 288
TspDTI ATGAA 4 cut(s) 17, 240, 365, 459
TspRI CASTG 2 cut(s) 440, 457
XapI RAATTY 2 cut(s) 275, 417
XbaI TCTAGA 1 cut(s) 422
XspI CTAG 2 cut(s) 176, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.