Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002884

Physical Location & Seq

Genomic Coordinates Forward (+)

5084524 .. 5086811

Gene Structure 2288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAGGCTCCTCTTCAGCTTCTGCTTCTTCTTCTTCATGATCATCTTTACCGCAACTGCTTATGATCCATTAGATCCTAGTGGTAACATTACAATCAAATGGGATATTATGTCCTGGACGGCAGATGGCTATGTGGCTACGGTAACTATGAACAACTTCCAAATCTACCGGCACATACAAAACCCTGGTTGGACATTAGGTTGGACATGGGCAAAGAAAGAGGTGATTTGGTCAATGGTTGGTGCACAAACAACAGAACAAGGAGACTGTTCCAAGTTTAAGGGAAATGTACCTCATTGCTGTAAGAAAACCCCTACAGTTGTTGATCTCTTGCCAGGTGTGCCTTATAATCAACAGTTCTCAAACTGTTGCAAAGGAGGTGTAATTGGAGCTTGGGGTCAAGATCCATCAGCCGCTGTATCCCAGTTTCAGGTTAGTGCTGGTTTAGCTGGAACTACAAACAAGACTGTCAAGCTTCCTAAGAACTTCACTTTGCTTGGTCCCGGCCCTGGTTACACTTGCGGTCCTGCCAAAATCGTGCCCTCTACCGTTTTTCTCACAACTGACAAACGGCGAAAAACACAAGCTTTGATGACATGGAATGTTACCTGCACATACTCACAGTTTTTAGCAAGAAAGCATCCAAGCTGTTGTGTCTCCTTCTCTTCTTTCTACAACGACACCATAACTCCTTGCCCGTCTTGTGCCTGTGGCTGCGAGAACAAAAAGAGCTGCGTCAAGGCTGATTCTAAGATTCTAACCAAGAAAGGTCTCAACACACCAAAAAAGGACAACACTCCTTTGTTGCAATGCACACATCACATGTGCCCTGTTAGAGTCCACTGGCACGTTAAAACTAACTACAAAGACTATTGGCGAGTGAAGATAGCAATCACAAATTTCAATTACCGGATGAATCATACACTCTGGACTTTAGCAATTCAGCATCCAAATCTCAACAATGTGACTCAAGTTTTCAGCTTTGACTACAAACCAGTCTCTCCTTACGGATCCATAAATGATACTGGAATGTTCTATGGAACGAAGTTTTACAATGATTTATTAATGGAAGCTGGACCTTCAGGGAATGTGCAATCAGAGGTTTTGCTACAGAAAGATCAAAAGACTTTTACTTTCAAGCAAGGTTGGGCTTTTCCTAGAAAAGTTTACTTTAATGGTGATGAATGTATGTTACCTCCACCAGATTCATACCCTTTTCTACCAAACTCTGCACAAGGGAACTTTGCTTCGTTCTCACTCACCATTCTTCTTCTCCTATTCATCTCAATATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031090 GO:0031224 GO:0031225 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

431

Amino Acids

48.51

Weight (kDa)

9.13

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	1 - 158	4.9e-63	COBRA-like protein
COB_C	PF25079	167 - 356	1.6e-54	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15630 AT5G15630 AT5G15630 AT5G15630 AT5G15630
fragaria_vesca	FvH4_5g13560 FvH4_6g46470 FvH4_6g46470
malus_domestica	MD06G1203800.v1.1 MD09G1072900.v1.1 MD14G1214900.v1.1 MD17G1064300.v1.1
prunus_persica	Prupe.3G250300_v2.0.a1 Prupe.5G207900_v2.0.a1 Prupe.5G207900_v2.0.a1
pyrus_communis	pycom06g18200 pycom17g06440
rosa_chinensis	RchiOBHm_Chr2g0165021 RchiOBHm_Chr7g0183391
rosa_laevigata	RLG00000005050 RLG00000021507
rosa_multiflora	Rmu_sc0000951.1_g000011
rosa_roxburghii	Rroxscaffold_2G00086110 Rroxscaffold_3G00270480
rosa_rugosa	Rorug02G0512400 Rorug02G0512400 Rorug06G0457600 Rorug06G0457700
rosa_samantha	Rh2AG580400 Rh2BG591700 Rh2CG562200 Rh2DG601800 Rh7AG058800 Rh7BG058800 Rh7CG060400 Rh7DG058500
rosa_wichuraiana	Rw2G048180 Rw7G004840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	617
AciI	CCGC	3 cut(s)	51, 414, 522
AclWI	GGATC	5 cut(s)	59, 68, 398, 1005, 1018
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	1 cut(s)	1065
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	430, 509
AflIII	ACRYGT	1 cut(s)	822
AgsI	TTSAA	2 cut(s)	904, 1138
AjnI	CCWGG	4 cut(s)	113, 184, 334, 508
AluBI	AGCT	9 cut(s)	18, 392, 449, 475, 587, 648, 732, 981, 1073
AluI	AGCT	9 cut(s)	18, 392, 449, 475, 587, 648, 732, 981, 1073
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	4 cut(s)	258, 661, 776, 1003
Alw44I	GTGCAC	1 cut(s)	243
AlwI	GGATC	5 cut(s)	59, 68, 398, 1005, 1018
AlwNI	CAGNNNCTG	2 cut(s)	21, 416
AoxI	GGCC	1 cut(s)	505
ApaLI	GTGCAC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	714, 732
ApoI	RAATTY	1 cut(s)	898
AseI	ATTAAT	1 cut(s)	1064
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	4 cut(s)	500, 506, 524, 1076
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	235, 1190, 1252
AvaII	GGWCC	3 cut(s)	500, 524, 1076
BaeGI	GKGCMC	3 cut(s)	247, 543, 830
BamHI	GGATCC	1 cut(s)	1010
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	701, 719
BccI	CCATC	2 cut(s)	119, 415
BceAI	ACGGC	2 cut(s)	135, 587
BciT130I	CCWGG	4 cut(s)	115, 186, 336, 510
BciVI	GTATCC	1 cut(s)	430
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	4 cut(s)	258, 661, 776, 1003
BfaI	CTAG	2 cut(s)	78, 1158
BfmI	CTRYAG	2 cut(s)	315, 1109
BfuAI	ACCTGC	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	3 cut(s)	414, 715, 733
BlsI	GCNGC	3 cut(s)	415, 716, 734
Bme1390I	CCNGG	5 cut(s)	115, 186, 336, 504, 510
Bme18I	GGWCC	3 cut(s)	500, 524, 1076
BmgT120I	GGNCC	4 cut(s)	500, 506, 524, 1076
BmiI	GGNNCC	3 cut(s)	8, 502, 1012
BmrFI	CCNGG	5 cut(s)	115, 186, 336, 504, 510
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	2 cut(s)	649, 955
BmuI	ACTGGG	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	954
BpuMI	CCSGG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	890
BsaI	GGTCTC	1 cut(s)	776
BsaJI	CCNNGG	2 cut(s)	184, 508
BsaWI	WCCGGW	1 cut(s)	909
BsaXI	ACNNNNNCTCC	2 cut(s)	673, 703
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 509
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	4 cut(s)	424, 848, 995, 1030
Bse3DI	GCAATG	2 cut(s)	295, 815
Bse8I	GATNNNNATC	1 cut(s)	890
BseBI	CCWGG	4 cut(s)	115, 186, 336, 510
BseDI	CCNNGG	2 cut(s)	184, 508
BseGI	GGATG	3 cut(s)	640, 918, 946
BseJI	GATNNNNATC	1 cut(s)	890
BseLI	CCNNNNNNNGG	2 cut(s)	430, 509
BseMI	GCAATG	2 cut(s)	295, 815
BseNI	ACTGG	4 cut(s)	424, 848, 995, 1030
BseSI	GKGCMC	3 cut(s)	247, 543, 830
BseXI	GCAGC	2 cut(s)	701, 719
BsgI	GTGCAG	2 cut(s)	595, 1215
BshFI	GGCC	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	3 cut(s)	169, 504, 910
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	430, 509
BsmAI	GTCTC	4 cut(s)	258, 661, 776, 1003
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	507
Bso31I	GGTCTC	1 cut(s)	776
Bsp1286I	GDGCHC	3 cut(s)	247, 543, 830
Bsp143I	GATC	7 cut(s)	39, 64, 73, 325, 403, 1010, 1117
BspACI	CCGC	3 cut(s)	51, 414, 522
BspANI	GGCC	1 cut(s)	507
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	8, 502, 1012
BspMI	ACCTGC	1 cut(s)	617
BspPI	GGATC	5 cut(s)	59, 68, 398, 1005, 1018
BspTNI	GGTCTC	1 cut(s)	776
BsrDI	GCAATG	2 cut(s)	295, 815
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	4 cut(s)	424, 848, 995, 1030
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	184, 508
BssMI	GATC	7 cut(s)	39, 64, 73, 325, 403, 1010, 1117
Bst2UI	CCWGG	4 cut(s)	115, 186, 336, 510
Bst4CI	ACNGT	8 cut(s)	142, 269, 319, 357, 368, 469, 550, 624
Bst6I	CTCTTC	2 cut(s)	17, 670
BstDEI	CTNAG	2 cut(s)	480, 750
BstF5I	GGATG	3 cut(s)	640, 918, 946
BstKTI	GATC	7 cut(s)	42, 67, 76, 328, 406, 1013, 1120
BstMAI	GTCTC	4 cut(s)	258, 661, 776, 1003
BstMBI	GATC	7 cut(s)	39, 64, 73, 325, 403, 1010, 1117
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 446
BstNI	CCWGG	4 cut(s)	115, 186, 336, 510
BstNSI	RCATGY	1 cut(s)	826
BstSCI	CCNGG	5 cut(s)	113, 184, 334, 502, 508
BstSFI	CTRYAG	2 cut(s)	315, 1109
BstSLI	GKGCMC	3 cut(s)	247, 543, 830
BstV1I	GCAGC	2 cut(s)	701, 719
BstX2I	RGATCY	3 cut(s)	73, 403, 1010
BstYI	RGATCY	3 cut(s)	73, 403, 1010
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	507
BtsCI	GGATG	3 cut(s)	640, 918, 946
BtsIMutI	CAGTG	1 cut(s)	841
BveI	ACCTGC	1 cut(s)	617
CaiI	CAGNNNCTG	2 cut(s)	21, 416
CciI	TCATGA	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	4 cut(s)	500, 506, 524, 1076
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	4 cut(s)	37, 207, 597, 823
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	2 cut(s)	480, 750
DpnI	GATC	7 cut(s)	41, 66, 75, 327, 405, 1012, 1119
DpnII	GATC	7 cut(s)	39, 64, 73, 325, 403, 1010, 1117
Eam1104I	CTCTTC	2 cut(s)	17, 670
EarI	CTCTTC	2 cut(s)	17, 670
Eco31I	GGTCTC	1 cut(s)	776
Eco47I	GGWCC	3 cut(s)	500, 524, 1076
Eco57I	CTGAAG	1 cut(s)	1065
EcoRII	CCWGG	4 cut(s)	113, 184, 334, 508
FaeI	CATG	4 cut(s)	40, 210, 600, 826
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	4 cut(s)	36, 206, 596, 822
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	414, 715, 733
FokI	GGATG	3 cut(s)	627, 925, 933
Fsp4HI	GCNGC	3 cut(s)	414, 715, 733
FspBI	CTAG	2 cut(s)	78, 1158
GluI	GCNGC	3 cut(s)	414, 715, 733
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	3 cut(s)	169, 504, 910
HgaI	GACGC	1 cut(s)	724
Hin1II	CATG	4 cut(s)	40, 210, 600, 826
HindIII	AAGCTT	2 cut(s)	473, 585
HinfI	GANTC	6 cut(s)	746, 754, 837, 916, 967, 1205
HpaII	CCGG	3 cut(s)	169, 504, 910
HphI	GGTGA	3 cut(s)	235, 1190, 1252
Hpy166II	GTNNAC	3 cut(s)	245, 841, 1168
Hpy188I	TCNGA	1 cut(s)	1099
Hpy188III	TCNNGA	3 cut(s)	37, 401, 928
Hpy8I	GTNNAC	3 cut(s)	245, 841, 1168
HpyAV	CCTTC	2 cut(s)	670, 1089
HpyCH4III	ACNGT	8 cut(s)	142, 269, 319, 357, 368, 469, 550, 624
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	7 cut(s)	245, 372, 612, 808, 813, 1093, 1232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 446
HpyF3I	CTNAG	2 cut(s)	480, 750
HpySE526I	ACGT	1 cut(s)	849
Hsp92II	CATG	4 cut(s)	40, 210, 600, 826
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	7 cut(s)	39, 64, 73, 325, 403, 1010, 1117
LmnI	GCTCC	2 cut(s)	12, 389
Lsp1109I	GCAGC	2 cut(s)	701, 719
LweI	GCATC	2 cut(s)	649, 955
MaeI	CTAG	2 cut(s)	78, 1158
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	6 cut(s)	83, 142, 512, 604, 964, 1191
MalI	GATC	7 cut(s)	41, 66, 75, 327, 405, 1012, 1119
MboI	GATC	7 cut(s)	39, 64, 73, 325, 403, 1010, 1117
MboII	GAAGA	8 cut(s)	4, 19, 22, 25, 657, 895, 1259, 1262
MflI	RGATCY	3 cut(s)	73, 403, 1010
MhlI	GDGCHC	3 cut(s)	247, 543, 830
MluCI	AATT	4 cut(s)	384, 898, 904, 939
MlyI	GAGTC	2 cut(s)	846, 961
MmeI	TCCRAC	2 cut(s)	170, 182
MnlI	CCTC	7 cut(s)	20, 214, 303, 371, 553, 1093, 1206
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	4 cut(s)	279, 852, 1064, 1173
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	3 cut(s)	169, 504, 910
MspR9I	CCNGG	5 cut(s)	115, 186, 336, 504, 510
MvaI	CCWGG	4 cut(s)	115, 186, 336, 510
MwoI	GCNNNNNNNGC	2 cut(s)	340, 446
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	7 cut(s)	39, 64, 73, 325, 403, 1010, 1117
NlaIII	CATG	4 cut(s)	40, 210, 600, 826
NlaIV	GGNNCC	3 cut(s)	8, 502, 1012
NmuCI	GTSAC	1 cut(s)	964
NspI	RCATGY	1 cut(s)	826
PagI	TCATGA	1 cut(s)	36
PciI	ACATGT	1 cut(s)	822
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	4 cut(s)	746, 754, 916, 1205
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	415, 716, 734
PleI	GAGTC	2 cut(s)	845, 961
PpsI	GAGTC	2 cut(s)	845, 961
PscI	ACATGT	1 cut(s)	822
PshBI	ATTAAT	1 cut(s)	1064
PsiI	TTATAA	1 cut(s)	348
Psp6I	CCWGG	4 cut(s)	113, 184, 334, 508
PspGI	CCWGG	4 cut(s)	113, 184, 334, 508
PspN4I	GGNNCC	3 cut(s)	8, 502, 1012
PspPI	GGNCC	4 cut(s)	500, 506, 524, 1076
PstNI	CAGNNNCTG	2 cut(s)	21, 416
PsuI	RGATCY	3 cut(s)	73, 403, 1010
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	4 cut(s)	279, 852, 1064, 1173
SatI	GCNGC	3 cut(s)	414, 715, 733
Sau3AI	GATC	7 cut(s)	39, 64, 73, 325, 403, 1010, 1117
Sau96I	GGNCC	4 cut(s)	500, 506, 524, 1076
SchI	GAGTC	2 cut(s)	846, 961
ScrFI	CCNGG	5 cut(s)	115, 186, 336, 504, 510
SduI	GDGCHC	3 cut(s)	247, 543, 830
SfaNI	GCATC	2 cut(s)	649, 955
SfcI	CTRYAG	2 cut(s)	315, 1109
SinI	GGWCC	3 cut(s)	500, 524, 1076
SmlI	CTYRAG	1 cut(s)	969
SmoI	CTYRAG	1 cut(s)	969
Sse9I	AATT	4 cut(s)	384, 898, 904, 939
SsiI	CCGC	3 cut(s)	51, 414, 522
SspMI	CTAG	2 cut(s)	78, 1158
StyD4I	CCNGG	5 cut(s)	113, 184, 334, 502, 508
TaaI	ACNGT	8 cut(s)	142, 269, 319, 357, 368, 469, 550, 624
TaiI	ACGT	1 cut(s)	852
TasI	AATT	4 cut(s)	384, 898, 904, 939
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	4 cut(s)	746, 754, 916, 1205
Tru1I	TTAA	4 cut(s)	279, 852, 1064, 1173
Tru9I	TTAA	4 cut(s)	279, 852, 1064, 1173
TscAI	CASTG	1 cut(s)	848
TseFI	GTSAC	1 cut(s)	964
TseI	GCWGC	2 cut(s)	714, 732
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	6 cut(s)	25, 164, 929, 1197, 1197, 1270
TspGWI	ACGGA	1 cut(s)	1023
TspRI	CASTG	1 cut(s)	848
VneI	GTGCAC	1 cut(s)	243
VpaK11BI	GGWCC	3 cut(s)	500, 524, 1076
VspI	ATTAAT	1 cut(s)	1064
XapI	RAATTY	1 cut(s)	898
XceI	RCATGY	1 cut(s)	826
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	78, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.