Rh2DG601800

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002884
Physical Location & Seq
Reverse (-)
83371033 .. 83373790
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG601800.1

Sequence Viewer

Length: 1140 bp
ATGTATCGGCACATAATGAGCCCTGGGTGGACATTGGGTTGGACATGGGCTAAAAAAGAAGTGATATGGACCGCGGTGGGAGCACAAACCACCGAGCAAGGTGACTGCTCCAAGTTCAAAGGGAACATACCTCATTGTTGCAAGAAAACCCCCACAGTCGTGGACTTGCTTCCCGGCGTGCCTTACAACCAGCAATACCAAAACTGTTGCAAAGGTGGAGTAGTGGGTGCTTGGGGCCAAGATCCTTCAGCTTCTGTCTCGGCCTTCCAGCTGAGTGTTGGAATGGCCGGTACTTCAAACAAGACTGTGAAACTCCCCAGGAACTTCACTCTGCTAGGACCAGGTCCAGGGTACACTTGTGGCAAGGCTAAAGTTGTGCCTCCCACCATCTTTTTGTCACCTGATCGTCGTCGTAAGACTCAAGCTCTCATGACTTGGAATGTGACTTGTACTTATTCACAGCTTCTGGCCCGTAAAAACCCAAGTTGTTGTGTATCACTCTCTTCTTTCTACAACGAAACAATTGTTCCCTGCCCATCTTGTTCTTGTGGTTGCCATAACAAGGACAGTTGTGTCAAAAGCAACTCGAAACTTCTGAGCATGGTGGGAGTTAACACCCCAAAGAAAGACAATGCCCCTCTTTTGCAGTGCACACACCACATGTGCCCGATAAGGATTCACTGGCATGTGAAAGTGAATTACAAGGAGTACTGGCGTGTGAAGGTTTCAGTTACAAACTTTAACTATCGGATGAACTACACACTTTGGACTCTGGTCATTCAGCACCCTAATCTCAACAATGTCACACAAGTTTTCAGCTTTGACTACAAGCCTCTTGTTCCTTACGAGTCCATAAATGACACTGGTATGTTCTATGGATTGAAATACTTCAATGACCAATTAATGGAAGCCGGGCCATTTGGGAACGTTCAGTCGGAGATTCTTCTTAAGAAGGACATAAACACATTTACTTTCAAGGAGGGGTGGGCATTTCCCCGCAAAGTTTACTTCAATGGTGATGAGTGCCAGATGCCCCCACCTGATACATACCCATTTCTGCCTAATTCTGCCCATCAAAATCTACTTTCATTCTCAGCATTGGTTTCCACATTAATTTTCTTGTTGATTGCTATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

379

Amino Acids

42.68

Weight (kDa)

9.14

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 2 - 153 5.8e-61 COBRA-like protein
COB_C PF25079 162 - 351 4.4e-54 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 572
AccB7I CCANNNNNTGG 1 cut(s) 904
AccII CGCG 1 cut(s) 74
AciI CCGC 3 cut(s) 72, 74, 997
AclI AACGTT 1 cut(s) 927
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 4 cut(s) 292, 353, 451, 710
AfiI CCNNNNNNNGG 3 cut(s) 347, 562, 904
AflII CTTAAG 1 cut(s) 947
AflIII ACRYGT 1 cut(s) 660
AgsI TTSAA 6 cut(s) 118, 297, 883, 892, 976, 1012
AjnI CCWGG 4 cut(s) 22, 317, 340, 346
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 5 cut(s) 251, 271, 425, 463, 819
AluI AGCT 5 cut(s) 251, 271, 425, 463, 819
Alw21I GWGCWC 2 cut(s) 85, 653
Alw26I GTCTC 1 cut(s) 262
Alw44I GTGCAC 1 cut(s) 649
AlwI GGATC 1 cut(s) 236
AlwNI CAGNNNCTG 2 cut(s) 254, 466
AoxI GGCC 5 cut(s) 235, 261, 285, 468, 914
ApaLI GTGCAC 1 cut(s) 649
AseI ATTAAT 2 cut(s) 902, 1112
Asp700I GAANNNNTTC 1 cut(s) 887
AspS9I GGNCC 6 cut(s) 69, 235, 338, 344, 469, 914
AsuC2I CCSGG 2 cut(s) 174, 913
AsuHPI GGTGA 3 cut(s) 113, 390, 1028
AvaII GGWCC 3 cut(s) 69, 338, 344
BaeGI GKGCMC 2 cut(s) 653, 668
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BanII GRGCYC 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 85, 653
BccI CCATC 3 cut(s) 395, 544, 1080
BciT130I CCWGG 4 cut(s) 24, 319, 342, 348
BcnI CCSGG 2 cut(s) 174, 913
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 335
BfrI CTTAAG 1 cut(s) 947
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 6 cut(s) 24, 174, 319, 342, 348, 913
Bme18I GGWCC 3 cut(s) 69, 338, 344
BmgT120I GGNCC 6 cut(s) 69, 235, 338, 344, 469, 914
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 6 cut(s) 24, 174, 319, 342, 348, 913
BmsI GCATC 1 cut(s) 1020
BoxI GACNNNNGTC 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 405
BpuMI CCSGG 2 cut(s) 174, 913
BsaJI CCNNGG 5 cut(s) 22, 23, 72, 317, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 562, 904
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 3 cut(s) 686, 716, 868
BseBI CCWGG 4 cut(s) 24, 319, 342, 348
BseDI CCNNGG 5 cut(s) 22, 23, 72, 317, 347
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 3 cut(s) 347, 562, 904
BseMII CTCAG 3 cut(s) 263, 587, 1107
BseNI ACTGG 3 cut(s) 686, 716, 868
BseSI GKGCMC 2 cut(s) 653, 668
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 5 cut(s) 237, 263, 287, 470, 916
BsiHKAI GWGCWC 2 cut(s) 85, 653
BsiSI CCGG 3 cut(s) 174, 288, 912
BslI CCNNNNNNNGG 3 cut(s) 347, 562, 904
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 5 cut(s) 237, 263, 287, 470, 916
Bsp1286I GDGCHC 4 cut(s) 23, 85, 653, 668
Bsp143I GATC 2 cut(s) 241, 403
BspACI CCGC 3 cut(s) 72, 74, 997
BspANI GGCC 5 cut(s) 237, 263, 287, 470, 916
BspCNI CTCAG 3 cut(s) 264, 588, 1106
BspFNI CGCG 1 cut(s) 74
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 236
BspPI GGATC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 947
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 3 cut(s) 686, 716, 868
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 5 cut(s) 22, 23, 72, 317, 347
BssMI GATC 2 cut(s) 241, 403
Bst2UI CCWGG 4 cut(s) 24, 319, 342, 348
Bst4CI ACNGT 4 cut(s) 157, 206, 307, 569
Bst6I CTCTTC 1 cut(s) 508
BstAFI CTTAAG 1 cut(s) 947
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 3 cut(s) 272, 596, 1093
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 756
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 2 cut(s) 244, 406
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 2 cut(s) 241, 403
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 4 cut(s) 24, 319, 342, 348
BstNSI RCATGY 2 cut(s) 664, 689
BstPAI GACNNNNGTC 1 cut(s) 773
BstSCI CCNGG 6 cut(s) 22, 172, 317, 340, 346, 911
BstSLI GKGCMC 2 cut(s) 653, 668
BstUI CGCG 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 241
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 5 cut(s) 237, 263, 287, 470, 916
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 756
BtsI GCAGTG 1 cut(s) 653
BtsIMutI CAGTG 3 cut(s) 653, 679, 861
Cac8I GCNNGC 1 cut(s) 179
CaiI CAGNNNCTG 2 cut(s) 254, 466
CciI TCATGA 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 6 cut(s) 69, 235, 338, 344, 469, 914
Cfr42I CCGCGG 1 cut(s) 75
CsiI ACCWGGT 1 cut(s) 340
Csp6I GTAC 4 cut(s) 291, 352, 450, 709
CviAII CATG 5 cut(s) 45, 430, 601, 661, 686
CviQI GTAC 4 cut(s) 291, 352, 450, 709
DdeI CTNAG 3 cut(s) 272, 596, 1093
DpnI GATC 2 cut(s) 243, 405
DpnII GATC 2 cut(s) 241, 403
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 23
Eco47I GGWCC 3 cut(s) 69, 338, 344
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 4 cut(s) 22, 317, 340, 346
EcoT38I GRGCYC 1 cut(s) 23
FaeI CATG 5 cut(s) 48, 433, 604, 664, 689
FatI CATG 5 cut(s) 44, 429, 600, 660, 685
FauI CCCGC 1 cut(s) 1004
FokI GGATG 1 cut(s) 763
FriOI GRGCYC 1 cut(s) 23
FspBI CTAG 1 cut(s) 335
HaeIII GGCC 5 cut(s) 237, 263, 287, 470, 916
HapII CCGG 3 cut(s) 174, 288, 912
Hin1II CATG 5 cut(s) 48, 433, 604, 664, 689
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 5 cut(s) 418, 676, 769, 848, 940
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 3 cut(s) 174, 288, 912
HphI GGTGA 3 cut(s) 113, 390, 1028
Hpy166II GTNNAC 6 cut(s) 30, 163, 354, 613, 651, 1006
Hpy188I TCNGA 3 cut(s) 597, 750, 937
Hpy188III TCNNGA 1 cut(s) 430
Hpy8I GTNNAC 6 cut(s) 30, 163, 354, 613, 651, 1006
Hpy99I CGWCG 2 cut(s) 411, 414
HpyAV CCTTC 4 cut(s) 255, 274, 715, 946
HpyCH4III ACNGT 4 cut(s) 157, 206, 307, 569
HpyCH4IV ACGT 1 cut(s) 927
HpyCH4V TGCA 4 cut(s) 141, 210, 646, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 272, 596, 1093
HpySE526I ACGT 1 cut(s) 927
Hsp92II CATG 5 cut(s) 48, 433, 604, 664, 689
KspAI GTTAAC 1 cut(s) 613
KspI CCGCGG 1 cut(s) 75
Kzo9I GATC 2 cut(s) 241, 403
LmnI GCTCC 2 cut(s) 80, 113
LweI GCATC 1 cut(s) 1020
MabI ACCWGGT 1 cut(s) 340
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 927
MaeIII GTNAC 5 cut(s) 101, 396, 442, 730, 802
MalI GATC 2 cut(s) 243, 405
MboI GATC 2 cut(s) 241, 403
MboII GAAGA 2 cut(s) 495, 935
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 4 cut(s) 23, 85, 653, 668
MluCI AATT 5 cut(s) 522, 697, 899, 1063, 1113
MlyI GAGTC 3 cut(s) 412, 763, 857
MmeI TCCRAC 3 cut(s) 20, 259, 915
MnlI CCTC 5 cut(s) 141, 390, 648, 843, 973
MroXI GAANNNNTTC 1 cut(s) 887
MseI TTAA 5 cut(s) 612, 741, 902, 948, 1112
MslI CAYNNNNRTG 3 cut(s) 158, 684, 866
MspA1I CMGCKG 2 cut(s) 74, 271
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 3 cut(s) 174, 288, 912
MspR9I CCNGG 6 cut(s) 24, 174, 319, 342, 348, 913
MunI CAATTG 1 cut(s) 522
MvaI CCWGG 4 cut(s) 24, 319, 342, 348
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 80
NciI CCSGG 2 cut(s) 174, 913
NdeII GATC 2 cut(s) 241, 403
NlaIII CATG 5 cut(s) 48, 433, 604, 664, 689
NlaIV GGNNCC 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 4 cut(s) 101, 396, 442, 802
NspI RCATGY 2 cut(s) 664, 689
OliI CACNNNNGTG 1 cut(s) 158
PagI TCATGA 1 cut(s) 429
PasI CCCWGGG 1 cut(s) 23
PciI ACATGT 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 887
PfeI GAWTC 2 cut(s) 676, 940
PflFI GACNNNGTC 1 cut(s) 342
PflMI CCANNNNNTGG 1 cut(s) 904
PleI GAGTC 3 cut(s) 412, 763, 856
PpsI GAGTC 3 cut(s) 412, 763, 856
PscI ACATGT 1 cut(s) 660
PshAI GACNNNNGTC 1 cut(s) 773
PshBI ATTAAT 2 cut(s) 902, 1112
Psp1406I AACGTT 1 cut(s) 927
Psp6I CCWGG 4 cut(s) 22, 317, 340, 346
PspGI CCWGG 4 cut(s) 22, 317, 340, 346
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 6 cut(s) 69, 235, 338, 344, 469, 914
PstNI CAGNNNCTG 2 cut(s) 254, 466
PsuI RGATCY 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 342
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 4 cut(s) 292, 353, 451, 710
RsaNI GTAC 4 cut(s) 291, 352, 450, 709
RseI CAYNNNNRTG 3 cut(s) 158, 684, 866
SacII CCGCGG 1 cut(s) 75
SaqAI TTAA 5 cut(s) 612, 741, 902, 948, 1112
Sau3AI GATC 2 cut(s) 241, 403
Sau96I GGNCC 6 cut(s) 69, 235, 338, 344, 469, 914
ScaI AGTACT 1 cut(s) 710
SchI GAGTC 3 cut(s) 412, 763, 857
ScrFI CCNGG 6 cut(s) 24, 174, 319, 342, 348, 913
SduI GDGCHC 4 cut(s) 23, 85, 653, 668
SexAI ACCWGGT 1 cut(s) 340
SfaNI GCATC 1 cut(s) 1020
Sfr303I CCGCGG 1 cut(s) 75
SgrBI CCGCGG 1 cut(s) 75
SinI GGWCC 3 cut(s) 69, 338, 344
SmiMI CAYNNNNRTG 3 cut(s) 158, 684, 866
SmlI CTYRAG 2 cut(s) 420, 947
SmoI CTYRAG 2 cut(s) 420, 947
Sse9I AATT 5 cut(s) 522, 697, 899, 1063, 1113
SsiI CCGC 3 cut(s) 72, 74, 997
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 6 cut(s) 22, 172, 317, 340, 346, 911
TaaI ACNGT 4 cut(s) 157, 206, 307, 569
TaiI ACGT 1 cut(s) 930
TaqI TCGA 1 cut(s) 587
TasI AATT 5 cut(s) 522, 697, 899, 1063, 1113
TatI WGTACW 2 cut(s) 449, 708
TfiI GAWTC 2 cut(s) 676, 940
Tru1I TTAA 5 cut(s) 612, 741, 902, 948, 1112
Tru9I TTAA 5 cut(s) 612, 741, 902, 948, 1112
TscAI CASTG 3 cut(s) 653, 686, 868
TseFI GTSAC 4 cut(s) 101, 396, 442, 802
Tsp45I GTSAC 4 cut(s) 101, 396, 442, 802
TspDTI ATGAA 2 cut(s) 767, 1077
TspRI CASTG 3 cut(s) 653, 686, 868
Tth111I GACNNNGTC 1 cut(s) 342
Van91I CCANNNNNTGG 1 cut(s) 904
Vha464I CTTAAG 1 cut(s) 947
VneI GTGCAC 1 cut(s) 649
VpaK11BI GGWCC 3 cut(s) 69, 338, 344
VspI ATTAAT 2 cut(s) 902, 1112
XceI RCATGY 2 cut(s) 664, 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 887
XspI CTAG 1 cut(s) 335
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.