Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002884

Physical Location & Seq

Genomic Coordinates Reverse (-)

35446530 .. 35450903

Gene Structure 4374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAGGTTTTTTGTGTCAGCTCTATTTCTTCTGGTCATTTTTTCATATGCAGCTGCATATGACCCCCTGGATCCAAATGGAAACATAACTATAAGATGGGACATAATGTCTTGGACACCAGATGGCTATGTGGCAACTGTAACCATAAACAACTTCCAAATGTATCGGCACATAATGAGCCCCGGGTGGACATTAGGTTGGACATGGGCTAAAAAAGAAGTGATATGGTCTGCGGTGGGAGCGCAAACCACCGAGCAAGGTGACTGCTCCAAGTTCAAAGGGAACATACCTCATTGTTGCAAGAAAACCCCCACAGTTGTGGACTTGCTTCCTGGTGTGCCATACAACCAACAATACCAAAACTGTTGCAAAGGTGGAGTAGTGGGTGCTTGGGGCCAAGATCCTTCAGCTTCTGTCTCGGCATTCCAGCTGAGTGTTGGAATGGCTGGTACTTCAAACAAGACGGTAAAACTTCCCAAGAACTTCACTTTGCTAGGACCAGGTCCAGGGTACACTTGTGGCAAGGCTAAAATTGTGCCTTCCACCATCTTTTTCTCACCTGATCATCGTCGTAAGACTCAAGCTCTCATGACATGGAATGTGACATGTACTTATTCACAGCTTCTGGCCAGGAAAAACCCAAGTTGTTGTGTATCACTCTCGTCTTTCTACAACGAAACAATTGTTCCTTGCCCAACTTGTTCTTGTGGTTGCCATAACAAGGACACTTGTGTCAAAAGCAACTCAAAACTTTTGAGCATGGTGGGAGTTAACACTCCAAAGAAAGACAATGCCCCTCTCTTGCAGTGCACACACCACATGTGCCCTGTAAGGATTCACTGGCATGTAAAAGTGAATTACAAGGAGTACTGGCGTGTGAAGGTTACGGTTACAAACTTTAACTATCGGATGAACTACACACTTTGGACTCTGGTTGTTCAGCATCCTAATCTCAACAATGTCACACAAGTTTACAGCTTTGATTACAAGCCTCTTGTTCCATATGAGTCCATAAATGATACTGGTATGTTCTATGGATTGAAATACTTCAATGACCAATTAATGGAAGCCGGGCCATTTGGGAATGTTCAGTCAGAGATTCTTCTTAAGAAGGACATAAACACATTCACTTTCAAGGAGGGGTGGGCATTTCCTCGCAAAGTTTACTTCAATGGTGATGAGTGCCAGATGCCTCCACCTGATACATACCCATTTCTGCCTAATTCTGCCCCCCATCAGAATCTATATTCTTTCTCAGCATTGGTTTCCATATTAATTTTCTTGTTGATAGCTATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

434

Amino Acids

48.91

Weight (kDa)

8.95

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	43 - 206	2.2e-66	COBRA-like protein
COB_C	PF25079	215 - 404	4.6e-56	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15630 AT5G15630 AT5G15630 AT5G15630 AT5G15630
fragaria_vesca	FvH4_5g13560 FvH4_6g46470 FvH4_6g46470
malus_domestica	MD06G1203800.v1.1 MD09G1072900.v1.1 MD14G1214900.v1.1 MD17G1064300.v1.1
prunus_persica	Prupe.3G250300_v2.0.a1 Prupe.5G207900_v2.0.a1 Prupe.5G207900_v2.0.a1
pyrus_communis	pycom06g18200 pycom17g06440
rosa_chinensis	RchiOBHm_Chr2g0165021 RchiOBHm_Chr7g0183391
rosa_laevigata	RLG00000005050 RLG00000021507
rosa_multiflora	Rmu_sc0000951.1_g000011
rosa_roxburghii	Rroxscaffold_2G00086110 Rroxscaffold_3G00270480
rosa_rugosa	Rorug02G0512400 Rorug02G0512400 Rorug06G0457600 Rorug06G0457700
rosa_samantha	Rh2AG580400 Rh2BG591700 Rh2CG562200 Rh2DG601800 Rh7AG058800 Rh7BG058800 Rh7CG060400 Rh7DG058500
rosa_wichuraiana	Rw2G048180 Rw7G004840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	731
AccB7I	CCANNNNNTGG	1 cut(s)	1063
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	3 cut(s)	65, 78, 395
AcoI	YGGCCR	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	4 cut(s)	451, 512, 610, 869
AfiI	CCNNNNNNNGG	3 cut(s)	506, 721, 1063
AflII	CTTAAG	1 cut(s)	1106
AflIII	ACRYGT	2 cut(s)	605, 819
AgsI	TTSAA	6 cut(s)	277, 456, 1042, 1051, 1135, 1171
AhdI	GACNNNNNGTC	1 cut(s)	106
AjnI	CCWGG	5 cut(s)	66, 331, 499, 505, 629
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	8 cut(s)	20, 53, 410, 430, 584, 622, 978, 1292
AluI	AGCT	8 cut(s)	20, 53, 410, 430, 584, 622, 978, 1292
Alw21I	GWGCWC	1 cut(s)	812
Alw26I	GTCTC	1 cut(s)	421
Alw44I	GTGCAC	1 cut(s)	808
AlwI	GGATC	3 cut(s)	65, 78, 395
AlwNI	CAGNNNCTG	2 cut(s)	413, 625
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	394, 627, 1073
ApaLI	GTGCAC	1 cut(s)	808
ApeKI	GCWGC	2 cut(s)	50, 53
AseI	ATTAAT	2 cut(s)	1061, 1274
Asp700I	GAANNNNTTC	1 cut(s)	1046
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	4 cut(s)	394, 497, 503, 1073
AsuC2I	CCSGG	3 cut(s)	183, 184, 1072
AsuHPI	GGTGA	3 cut(s)	272, 549, 1187
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	2 cut(s)	497, 503
BaeGI	GKGCMC	2 cut(s)	812, 827
BaeI	ACNNNNGTAYC	2 cut(s)	502, 535
BalI	TGGCCA	1 cut(s)	629
BamHI	GGATCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	2 cut(s)	40, 62
BccI	CCATC	4 cut(s)	90, 116, 554, 1242
BciT130I	CCWGG	5 cut(s)	68, 333, 501, 507, 631
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	3 cut(s)	183, 184, 1072
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	494
BfrI	CTTAAG	1 cut(s)	1106
BisI	GCNGC	2 cut(s)	51, 54
BlsI	GCNGC	2 cut(s)	52, 55
BmcAI	AGTACT	1 cut(s)	869
Bme1390I	CCNGG	8 cut(s)	68, 183, 184, 333, 501, 507, 631, 1072
Bme18I	GGWCC	2 cut(s)	497, 503
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	4 cut(s)	394, 497, 503, 1073
BmiI	GGNNCC	2 cut(s)	72, 395
BmrFI	CCNGG	8 cut(s)	68, 183, 184, 333, 501, 507, 631, 1072
BmsI	GCATC	2 cut(s)	952, 1179
BpuEI	CTTGAG	1 cut(s)	564
BpuMI	CCSGG	3 cut(s)	183, 184, 1072
BsaJI	CCNNGG	4 cut(s)	66, 181, 182, 506
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 721, 1063
Bse1I	ACTGG	3 cut(s)	845, 875, 1027
BseBI	CCWGG	5 cut(s)	68, 333, 501, 507, 631
BseDI	CCNNGG	4 cut(s)	66, 181, 182, 506
BseGI	GGATG	2 cut(s)	915, 943
BseLI	CCNNNNNNNGG	3 cut(s)	506, 721, 1063
BseMII	CTCAG	2 cut(s)	422, 1269
BseNI	ACTGG	3 cut(s)	845, 875, 1027
BseSI	GKGCMC	2 cut(s)	812, 827
BseXI	GCAGC	2 cut(s)	40, 62
BshFI	GGCC	3 cut(s)	396, 629, 1075
BsiHKAI	GWGCWC	1 cut(s)	812
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	183, 1071
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	506, 721, 1063
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	3 cut(s)	396, 629, 1075
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	182, 812, 827
Bsp143I	GATC	3 cut(s)	70, 400, 562
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	3 cut(s)	396, 629, 1075
BspCNI	CTCAG	2 cut(s)	423, 1268
BspHI	TCATGA	1 cut(s)	588
BspLI	GGNNCC	2 cut(s)	72, 395
BspPI	GGATC	3 cut(s)	65, 78, 395
BspTI	CTTAAG	1 cut(s)	1106
BsrI	ACTGG	3 cut(s)	845, 875, 1027
BssECI	CCNNGG	4 cut(s)	66, 181, 182, 506
BssMI	GATC	3 cut(s)	70, 400, 562
Bst2UI	CCWGG	5 cut(s)	68, 333, 501, 507, 631
Bst4CI	ACNGT	5 cut(s)	139, 316, 365, 466, 889
BstAFI	CTTAAG	1 cut(s)	1106
BstDEI	CTNAG	2 cut(s)	431, 1255
BstF5I	GGATG	2 cut(s)	915, 943
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	3 cut(s)	73, 403, 565
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	70, 400, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	5 cut(s)	68, 333, 501, 507, 631
BstNSI	RCATGY	3 cut(s)	609, 823, 848
BstSCI	CCNGG	8 cut(s)	66, 181, 182, 331, 499, 505, 629, 1070
BstSLI	GKGCMC	2 cut(s)	812, 827
BstV1I	GCAGC	2 cut(s)	40, 62
BstX2I	RGATCY	2 cut(s)	70, 400
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	70, 400
BsuRI	GGCC	3 cut(s)	396, 629, 1075
BtsCI	GGATG	2 cut(s)	915, 943
BtsI	GCAGTG	1 cut(s)	812
BtsIMutI	CAGTG	2 cut(s)	812, 838
CaiI	CAGNNNCTG	2 cut(s)	413, 625
CciI	TCATGA	1 cut(s)	588
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	4 cut(s)	394, 497, 503, 1073
Cfr9I	CCCGGG	1 cut(s)	182
CsiI	ACCWGGT	1 cut(s)	499
Csp6I	GTAC	4 cut(s)	450, 511, 609, 868
CviAII	CATG	7 cut(s)	204, 589, 594, 606, 760, 820, 845
CviQI	GTAC	4 cut(s)	450, 511, 609, 868
DdeI	CTNAG	2 cut(s)	431, 1255
DpnI	GATC	3 cut(s)	72, 402, 564
DpnII	GATC	3 cut(s)	70, 400, 562
DrdI	GACNNNNNNGTC	1 cut(s)	731
DriI	GACNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	731
EaeI	YGGCCR	1 cut(s)	627
Eam1105I	GACNNNNNGTC	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	497, 503
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	182
EcoRII	CCWGG	5 cut(s)	66, 331, 499, 505, 629
EcoT38I	GRGCYC	1 cut(s)	182
FaeI	CATG	7 cut(s)	207, 592, 597, 609, 763, 823, 848
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	7 cut(s)	203, 588, 593, 605, 759, 819, 844
FauNDI	CATATG	3 cut(s)	46, 58, 1003
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	51, 54
FokI	GGATG	2 cut(s)	922, 930
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	51, 54
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	51, 54
HaeIII	GGCC	3 cut(s)	396, 629, 1075
HapII	CCGG	2 cut(s)	183, 1071
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	7 cut(s)	207, 592, 597, 609, 763, 823, 848
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	6 cut(s)	577, 835, 928, 1007, 1099, 1240
HpaI	GTTAAC	1 cut(s)	772
HpaII	CCGG	2 cut(s)	183, 1071
HphI	GGTGA	3 cut(s)	272, 549, 1187
Hpy166II	GTNNAC	7 cut(s)	189, 322, 513, 772, 810, 973, 1165
Hpy188I	TCNGA	3 cut(s)	909, 1096, 1239
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	7 cut(s)	189, 322, 513, 772, 810, 973, 1165
Hpy99I	CGWCG	1 cut(s)	573
HpyAV	CCTTC	4 cut(s)	414, 549, 874, 1105
HpyCH4III	ACNGT	5 cut(s)	139, 316, 365, 466, 889
HpyCH4V	TGCA	6 cut(s)	50, 56, 300, 369, 805, 810
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	431, 1255
Hsp92II	CATG	7 cut(s)	207, 592, 597, 609, 763, 823, 848
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	562
KspAI	GTTAAC	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	70, 400, 562
LmnI	GCTCC	2 cut(s)	239, 272
Lsp1109I	GCAGC	2 cut(s)	40, 62
LweI	GCATC	2 cut(s)	952, 1179
MabI	ACCWGGT	1 cut(s)	499
MaeI	CTAG	1 cut(s)	494
MaeIII	GTNAC	6 cut(s)	139, 260, 601, 883, 889, 961
MalI	GATC	3 cut(s)	72, 402, 564
MboI	GATC	3 cut(s)	70, 400, 562
MboII	GAAGA	2 cut(s)	20, 1094
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	2 cut(s)	70, 400
MhlI	GDGCHC	3 cut(s)	182, 812, 827
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	6 cut(s)	531, 681, 856, 1058, 1222, 1275
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	3 cut(s)	571, 922, 1016
MmeI	TCCRAC	2 cut(s)	179, 418
MnlI	CCTC	6 cut(s)	300, 807, 1002, 1132, 1164, 1203
Mox20I	TGGCCA	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	1046
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	5 cut(s)	771, 900, 1061, 1107, 1274
MslI	CAYNNNNRTG	2 cut(s)	317, 843
Msp20I	TGGCCA	1 cut(s)	629
MspA1I	CMGCKG	2 cut(s)	53, 430
MspCI	CTTAAG	1 cut(s)	1106
MspI	CCGG	2 cut(s)	183, 1071
MspR9I	CCNGG	8 cut(s)	68, 183, 184, 333, 501, 507, 631, 1072
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	5 cut(s)	68, 333, 501, 507, 631
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	3 cut(s)	183, 184, 1072
NdeI	CATATG	3 cut(s)	46, 58, 1003
NdeII	GATC	3 cut(s)	70, 400, 562
NlaIII	CATG	7 cut(s)	207, 592, 597, 609, 763, 823, 848
NlaIV	GGNNCC	2 cut(s)	72, 395
NmeAIII	GCCGAG	1 cut(s)	398
NmuCI	GTSAC	3 cut(s)	260, 601, 961
NspI	RCATGY	3 cut(s)	609, 823, 848
OliI	CACNNNNGTG	1 cut(s)	317
PagI	TCATGA	1 cut(s)	588
PciI	ACATGT	2 cut(s)	605, 819
PctI	GAATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	1046
PfeI	GAWTC	3 cut(s)	835, 1099, 1240
PflFI	GACNNNGTC	1 cut(s)	501
PflMI	CCANNNNNTGG	1 cut(s)	1063
PkrI	GCNGC	2 cut(s)	52, 55
PleI	GAGTC	3 cut(s)	571, 922, 1015
PpsI	GAGTC	3 cut(s)	571, 922, 1015
PscI	ACATGT	2 cut(s)	605, 819
PshBI	ATTAAT	2 cut(s)	1061, 1274
Psp6I	CCWGG	5 cut(s)	66, 331, 499, 505, 629
PspGI	CCWGG	5 cut(s)	66, 331, 499, 505, 629
PspN4I	GGNNCC	2 cut(s)	72, 395
PspPI	GGNCC	4 cut(s)	394, 497, 503, 1073
PstNI	CAGNNNCTG	2 cut(s)	413, 625
PsuI	RGATCY	2 cut(s)	70, 400
PsyI	GACNNNGTC	1 cut(s)	501
PvuII	CAGCTG	2 cut(s)	53, 430
RsaI	GTAC	4 cut(s)	451, 512, 610, 869
RsaNI	GTAC	4 cut(s)	450, 511, 609, 868
RseI	CAYNNNNRTG	2 cut(s)	317, 843
SaqAI	TTAA	5 cut(s)	771, 900, 1061, 1107, 1274
SatI	GCNGC	2 cut(s)	51, 54
Sau3AI	GATC	3 cut(s)	70, 400, 562
Sau96I	GGNCC	4 cut(s)	394, 497, 503, 1073
ScaI	AGTACT	1 cut(s)	869
SchI	GAGTC	3 cut(s)	571, 922, 1016
ScrFI	CCNGG	8 cut(s)	68, 183, 184, 333, 501, 507, 631, 1072
SduI	GDGCHC	3 cut(s)	182, 812, 827
SexAI	ACCWGGT	1 cut(s)	499
SfaNI	GCATC	2 cut(s)	952, 1179
SinI	GGWCC	2 cut(s)	497, 503
SmaI	CCCGGG	1 cut(s)	184
SmiMI	CAYNNNNRTG	2 cut(s)	317, 843
SmlI	CTYRAG	2 cut(s)	579, 1106
SmoI	CTYRAG	2 cut(s)	579, 1106
Sse9I	AATT	6 cut(s)	531, 681, 856, 1058, 1222, 1275
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	494
StyD4I	CCNGG	8 cut(s)	66, 181, 182, 331, 499, 505, 629, 1070
TaaI	ACNGT	5 cut(s)	139, 316, 365, 466, 889
TasI	AATT	6 cut(s)	531, 681, 856, 1058, 1222, 1275
TatI	WGTACW	2 cut(s)	608, 867
TfiI	GAWTC	3 cut(s)	835, 1099, 1240
Tru1I	TTAA	5 cut(s)	771, 900, 1061, 1107, 1274
Tru9I	TTAA	5 cut(s)	771, 900, 1061, 1107, 1274
TscAI	CASTG	2 cut(s)	812, 845
TseFI	GTSAC	3 cut(s)	260, 601, 961
TseI	GCWGC	2 cut(s)	50, 53
Tsp45I	GTSAC	3 cut(s)	260, 601, 961
TspDTI	ATGAA	2 cut(s)	33, 926
TspMI	CCCGGG	1 cut(s)	182
TspRI	CASTG	2 cut(s)	812, 845
Tth111I	GACNNNGTC	1 cut(s)	501
Van91I	CCANNNNNTGG	1 cut(s)	1063
Vha464I	CTTAAG	1 cut(s)	1106
VneI	GTGCAC	1 cut(s)	808
VpaK11BI	GGWCC	2 cut(s)	497, 503
VspI	ATTAAT	2 cut(s)	1061, 1274
XceI	RCATGY	3 cut(s)	609, 823, 848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmaI	CCCGGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	1046
XspI	CTAG	1 cut(s)	494
ZrmI	AGTACT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.