Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002884

Physical Location & Seq

Genomic Coordinates Reverse (-)

4470071 .. 4472749

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG058500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAACTCAATAACCAGGCTAATCCATCTCACAAAATCCACCTTGACGTGGTAACATGTTGTTCTTGGCTGAAGATCACATTCTTGGCCATGTTATTTTGTGTGCTAGTATCACCTACAGCGGCATATGATCCGTTGGATCCAACCGGAAACATAACGATCAAATGGGATGTCGTGTCTTGGACAGCAGATGGTTATGTTGCTGCAGTGACCATGAACAACTTCCAAATGTACCGGCAAATCGCTAACCCCGGATGGACTCTAGGATGGACATGGGCAAAGAAGGAAGTAATCTGGACCATGGTGGGAGCTCAGACCACAGAGCAAGGAGACTGTTCCAAATTCAAAGGAAACACACCACATTGTTGTAAGAAAACTCCAACAGTTGTTGACTTGCTACCCGGAGTTCCTTACAACCAACAGTTCACCAACTGCTGCAAAGGTGGCGTCATGGCATCTTGGGGACAGGACCCTTCAGCTTCAGTCTCGGCTTTCCAGGTGAGCGTCGGGCAAGGCGGAACTTCAAATAAAACAGTCAAGCTTCCCAAGAACTTCACCTTGCTCGGTCCGGGACTAGGGTACACTTGTGGCCCTGCAAAGGTTGTGCCATCCACTGTCTACCTCACAGCTGATCGGAGGCGAAAGACTCAAGCACTTATGACATGGAATGTGACATGTACCTATTCACAGTATCTTGCCTCCAAGAATCCAAGCTGTTGCGTTTCGTTTTCGTCTTTCTACAATGAAACTGTAGTTCCATGCCCATCTTGTTCTTGCGGTTGTCATAACAAGAAAGATTGCATCAAGGCAGACTCAAAACTGCTGAAAAAGGCAGGAATCAACACACCAAAAAAGGACAATACACCATTGTTACAGTGCACACACCATATGTGCCCGATCCGAGTACACTGGCATGTGAAGCAAAATTACAAGGACTATTGGCGTGTCAAGATATCCGTCACGAATTTCAACTACCGGCTCAACTACACCGAGTGGACACTCGTTGCACAGCACCCTAATCTCAATAATATCACTCAAGTCTTTAGCTTTGATTACAAGCCCCTTGTTGCTTACCAGTCCATCAGTAAGTTCCTATTGTGCAGTTACACAATGCTTGTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

374

Amino Acids

41.84

Weight (kDa)

9.09

Isoelectric Point (pI)

24.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	66 - 229	1.2e-65	COBRA-like protein
COB_C	PF25079	238 - 358	2.1e-32	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15630 AT5G15630 AT5G15630 AT5G15630 AT5G15630
fragaria_vesca	FvH4_5g13560 FvH4_6g46470 FvH4_6g46470
malus_domestica	MD06G1203800.v1.1 MD09G1072900.v1.1 MD14G1214900.v1.1 MD17G1064300.v1.1
prunus_persica	Prupe.3G250300_v2.0.a1 Prupe.5G207900_v2.0.a1 Prupe.5G207900_v2.0.a1
pyrus_communis	pycom06g18200 pycom17g06440
rosa_chinensis	RchiOBHm_Chr2g0165021 RchiOBHm_Chr7g0183391
rosa_laevigata	RLG00000005050 RLG00000021507
rosa_multiflora	Rmu_sc0000951.1_g000011
rosa_roxburghii	Rroxscaffold_2G00086110 Rroxscaffold_3G00270480
rosa_rugosa	Rorug02G0512400 Rorug02G0512400 Rorug06G0457600 Rorug06G0457700
rosa_samantha	Rh2AG580400 Rh2BG591700 Rh2CG562200 Rh2DG601800 Rh7AG058800 Rh7BG058800 Rh7CG060400 Rh7DG058500
rosa_wichuraiana	Rw2G048180 Rw7G004840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	618
AciI	CCGC	3 cut(s)	122, 516, 777
AclWI	GGATC	4 cut(s)	125, 134, 147, 892
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	341, 964
AcuI	CTGAAG	3 cut(s)	92, 459, 465
AcyI	GRCGYC	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	993
AfaI	GTAC	4 cut(s)	233, 581, 679, 906
AfiI	CCNNNNNNNGG	3 cut(s)	49, 575, 598
AflIII	ACRYGT	2 cut(s)	56, 674
AgsI	TTSAA	3 cut(s)	346, 525, 970
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	15, 495
AluBI	AGCT	6 cut(s)	311, 479, 541, 629, 714, 1047
AluI	AGCT	6 cut(s)	311, 479, 541, 629, 714, 1047
Alw21I	GWGCWC	2 cut(s)	313, 881
Alw26I	GTCTC	2 cut(s)	324, 490
Alw44I	GTGCAC	1 cut(s)	877
AlwI	GGATC	4 cut(s)	125, 134, 147, 892
AoxI	GGCC	2 cut(s)	87, 589
ApaLI	GTGCAC	1 cut(s)	877
ApeKI	GCWGC	2 cut(s)	203, 435
ApoI	RAATTY	2 cut(s)	341, 964
ArsI	GACNNNNNNTTYG	4 cut(s)	156, 188, 432, 464
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	4 cut(s)	297, 469, 566, 590
AsuC2I	CCSGG	3 cut(s)	252, 402, 570
AsuHPI	GGTGA	4 cut(s)	105, 418, 511, 547
AvaII	GGWCC	3 cut(s)	297, 469, 566
BaeGI	GKGCMC	2 cut(s)	881, 896
BaeI	ACNNNNGTAYC	2 cut(s)	571, 604
BalI	TGGCCA	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	911, 943
Bbv12I	GWGCWC	2 cut(s)	313, 881
BbvI	GCAGC	2 cut(s)	190, 422
BccI	CCATC	7 cut(s)	34, 185, 249, 261, 616, 772, 1088
BciT130I	CCWGG	2 cut(s)	17, 497
BcnI	CCSGG	3 cut(s)	252, 402, 570
BcoDI	GTCTC	2 cut(s)	324, 490
BfaI	CTAG	3 cut(s)	107, 263, 575
BfmI	CTRYAG	3 cut(s)	117, 204, 750
BisI	GCNGC	3 cut(s)	123, 204, 436
BlsI	GCNGC	3 cut(s)	124, 205, 437
Bme1390I	CCNGG	5 cut(s)	17, 252, 402, 497, 570
Bme18I	GGWCC	3 cut(s)	297, 469, 566
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	4 cut(s)	297, 469, 566, 590
BmiI	GGNNCC	2 cut(s)	141, 471
BmrFI	CCNGG	5 cut(s)	17, 252, 402, 497, 570
BmsI	GCATC	2 cut(s)	464, 810
BpuEI	CTTGAG	2 cut(s)	633, 1020
BpuMI	CCSGG	3 cut(s)	252, 402, 570
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	250, 300
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 575, 598
Bse118I	RCCGGY	2 cut(s)	234, 975
Bse1I	ACTGG	2 cut(s)	914, 1075
BseBI	CCWGG	2 cut(s)	17, 497
BseDI	CCNNGG	2 cut(s)	250, 300
BseGI	GGATG	4 cut(s)	175, 260, 272, 608
BseLI	CCNNNNNNNGG	3 cut(s)	49, 575, 598
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	914, 1075
BseSI	GKGCMC	2 cut(s)	881, 896
BseXI	GCAGC	2 cut(s)	190, 422
BsgI	GTGCAG	1 cut(s)	1120
BshFI	GGCC	2 cut(s)	89, 591
BsiHKAI	GWGCWC	2 cut(s)	313, 881
BsiSI	CCGG	6 cut(s)	147, 235, 252, 402, 569, 976
BslFI	GGGAC	2 cut(s)	477, 585
BslI	CCNNNNNNNGG	3 cut(s)	49, 575, 598
BsmAI	GTCTC	2 cut(s)	324, 490
BsmFI	GGGAC	2 cut(s)	477, 585
BsnI	GGCC	2 cut(s)	89, 591
Bsp1286I	GDGCHC	3 cut(s)	313, 881, 896
Bsp143I	GATC	6 cut(s)	75, 130, 139, 159, 631, 897
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	3 cut(s)	122, 516, 777
BspANI	GGCC	2 cut(s)	89, 591
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	141, 471
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	4 cut(s)	125, 134, 147, 892
BsrFI	RCCGGY	2 cut(s)	234, 975
BsrI	ACTGG	2 cut(s)	914, 1075
BssAI	RCCGGY	2 cut(s)	234, 975
BssECI	CCNNGG	2 cut(s)	250, 300
BssMI	GATC	6 cut(s)	75, 130, 139, 159, 631, 897
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	17, 497
Bst4CI	ACNGT	8 cut(s)	335, 385, 423, 535, 616, 690, 751, 876
BstACI	GRCGYC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	4 cut(s)	175, 260, 272, 608
BstKTI	GATC	6 cut(s)	78, 133, 142, 162, 634, 900
BstMAI	GTCTC	2 cut(s)	324, 490
BstMBI	GATC	6 cut(s)	75, 130, 139, 159, 631, 897
BstMWI	GCNNNNNNNGC	2 cut(s)	444, 919
BstNI	CCWGG	2 cut(s)	17, 497
BstNSI	RCATGY	3 cut(s)	60, 678, 917
BstSCI	CCNGG	5 cut(s)	15, 250, 400, 495, 568
BstSFI	CTRYAG	3 cut(s)	117, 204, 750
BstSLI	GKGCMC	2 cut(s)	881, 896
BstV1I	GCAGC	2 cut(s)	190, 422
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	89, 591
BtgI	CCRYGG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	4 cut(s)	175, 260, 272, 608
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	4 cut(s)	213, 612, 881, 907
Cfr10I	RCCGGY	2 cut(s)	234, 975
Cfr13I	GGNCC	4 cut(s)	297, 469, 566, 590
CpoI	CGGWCCG	1 cut(s)	566
CseI	GACGC	2 cut(s)	436, 493
Csp6I	GTAC	4 cut(s)	232, 580, 678, 905
CspI	CGGWCCG	1 cut(s)	566
CviQI	GTAC	4 cut(s)	232, 580, 678, 905
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	6 cut(s)	77, 132, 141, 161, 633, 899
DpnII	GATC	6 cut(s)	75, 130, 139, 159, 631, 897
DraIII	CACNNNGTG	1 cut(s)	993
EaeI	YGGCCR	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	954
Eco47I	GGWCC	3 cut(s)	297, 469, 566
Eco53kI	GAGCTC	1 cut(s)	311
Eco57I	CTGAAG	3 cut(s)	92, 459, 465
EcoICRI	GAGCTC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	15, 495
EcoRV	GATATC	1 cut(s)	954
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	300
FaqI	GGGAC	2 cut(s)	477, 585
FauNDI	CATATG	2 cut(s)	127, 888
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	3 cut(s)	123, 204, 436
FokI	GGATG	4 cut(s)	182, 267, 279, 595
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	3 cut(s)	123, 204, 436
FspBI	CTAG	3 cut(s)	107, 263, 575
GluI	GCNGC	3 cut(s)	123, 204, 436
HaeIII	GGCC	2 cut(s)	89, 591
HapII	CCGG	6 cut(s)	147, 235, 252, 402, 569, 976
HgaI	GACGC	2 cut(s)	436, 493
Hin1I	GRCGYC	1 cut(s)	447
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	5 cut(s)	259, 646, 706, 812, 837
HpaII	CCGG	6 cut(s)	147, 235, 252, 402, 569, 976
HphI	GGTGA	4 cut(s)	105, 418, 511, 547
Hpy166II	GTNNAC	7 cut(s)	391, 426, 582, 619, 879, 907, 996
Hpy188I	TCNGA	3 cut(s)	315, 636, 902
Hpy188III	TCNNGA	3 cut(s)	295, 949, 961
Hpy8I	GTNNAC	7 cut(s)	391, 426, 582, 619, 879, 907, 996
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	2 cut(s)	277, 483
HpyCH4III	ACNGT	8 cut(s)	335, 385, 423, 535, 616, 690, 751, 876
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	7 cut(s)	206, 438, 596, 801, 879, 1007, 1101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	444, 919
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	447
Kzo9I	GATC	6 cut(s)	75, 130, 139, 159, 631, 897
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	2 cut(s)	190, 422
LweI	GCATC	2 cut(s)	464, 810
MaeI	CTAG	3 cut(s)	107, 263, 575
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	6 cut(s)	52, 208, 670, 870, 958, 1103
MalI	GATC	6 cut(s)	77, 132, 141, 161, 633, 899
MboI	GATC	6 cut(s)	75, 130, 139, 159, 631, 897
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	3 cut(s)	313, 881, 896
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	4 cut(s)	341, 925, 964, 1120
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	3 cut(s)	253, 640, 806
MmeI	TCCRAC	3 cut(s)	117, 167, 404
MnlI	CCTC	3 cut(s)	630, 632, 709
Mox20I	TGGCCA	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	912
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	2 cut(s)	122, 629
MspI	CCGG	6 cut(s)	147, 235, 252, 402, 569, 976
MspR9I	CCNGG	5 cut(s)	17, 252, 402, 497, 570
MvaI	CCWGG	2 cut(s)	17, 497
MwoI	GCNNNNNNNGC	2 cut(s)	444, 919
NciI	CCSGG	3 cut(s)	252, 402, 570
NcoI	CCATGG	1 cut(s)	300
NdeI	CATATG	2 cut(s)	127, 888
NdeII	GATC	6 cut(s)	75, 130, 139, 159, 631, 897
NlaIV	GGNNCC	2 cut(s)	141, 471
NmeAIII	GCCGAG	1 cut(s)	467
NmuCI	GTSAC	3 cut(s)	208, 670, 958
NspI	RCATGY	3 cut(s)	60, 678, 917
PciI	ACATGT	2 cut(s)	56, 674
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	706, 837
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	3 cut(s)	124, 205, 437
PleI	GAGTC	3 cut(s)	253, 640, 806
PpsI	GAGTC	3 cut(s)	253, 640, 806
PpuMI	RGGWCCY	1 cut(s)	469
PscI	ACATGT	2 cut(s)	56, 674
Psp124BI	GAGCTC	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	469
Psp6I	CCWGG	2 cut(s)	15, 495
PspGI	CCWGG	2 cut(s)	15, 495
PspN4I	GGNNCC	2 cut(s)	141, 471
PspPI	GGNCC	4 cut(s)	297, 469, 566, 590
PspPPI	RGGWCCY	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	4 cut(s)	233, 581, 679, 906
RsaNI	GTAC	4 cut(s)	232, 580, 678, 905
RseI	CAYNNNNRTG	1 cut(s)	912
Rsr2I	CGGWCCG	1 cut(s)	566
RsrII	CGGWCCG	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	313
SatI	GCNGC	3 cut(s)	123, 204, 436
Sau3AI	GATC	6 cut(s)	75, 130, 139, 159, 631, 897
Sau96I	GGNCC	4 cut(s)	297, 469, 566, 590
SchI	GAGTC	3 cut(s)	253, 640, 806
ScrFI	CCNGG	5 cut(s)	17, 252, 402, 497, 570
SduI	GDGCHC	3 cut(s)	313, 881, 896
SfaNI	GCATC	2 cut(s)	464, 810
SfcI	CTRYAG	3 cut(s)	117, 204, 750
SinI	GGWCC	3 cut(s)	297, 469, 566
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	2 cut(s)	648, 1035
SmoI	CTYRAG	2 cut(s)	648, 1035
Sse9I	AATT	4 cut(s)	341, 925, 964, 1120
SsiI	CCGC	3 cut(s)	122, 516, 777
SspMI	CTAG	3 cut(s)	107, 263, 575
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	5 cut(s)	15, 250, 400, 495, 568
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	8 cut(s)	335, 385, 423, 535, 616, 690, 751, 876
TaiI	ACGT	1 cut(s)	51
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	4 cut(s)	341, 925, 964, 1120
TatI	WGTACW	1 cut(s)	904
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	706, 837
TscAI	CASTG	4 cut(s)	213, 619, 881, 914
TseFI	GTSAC	3 cut(s)	208, 670, 958
TseI	GCWGC	2 cut(s)	203, 435
Tsp45I	GTSAC	3 cut(s)	208, 670, 958
TspDTI	ATGAA	2 cut(s)	230, 759
TspGWI	ACGGA	2 cut(s)	123, 946
TspRI	CASTG	4 cut(s)	213, 619, 881, 914
VneI	GTGCAC	1 cut(s)	877
VpaK11BI	GGWCC	3 cut(s)	297, 469, 566
XapI	RAATTY	2 cut(s)	341, 964
XceI	RCATGY	3 cut(s)	60, 678, 917
XmiI	GTMKAC	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	3 cut(s)	107, 263, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.