Rh7AG058800

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002884
Physical Location & Seq
Reverse (-)
4043435 .. 4046762
3328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG058800.1

Sequence Viewer

Length: 1155 bp
ATGAACAACTTCCAAATGTACCGGCAAATCGCTAACCCCGGATGGACTCTAGGATGGACATGGGCAAAGAAGGAAGTAATCTGGACCATGGTGGGAGCTCAGACCACAGAGCAAGGAGACTGTTCCAAATTCAAAGGAAACACACCACATTGTTGTAAGAAAACTCCAACAGTTGTTGACTTGCTACCCGGAGTTCCTTACAACCAACAGTTCACCAACTGCTGCAAAGGTGGCGTCATGGCATCTTGGGGACAGGACCCTTCAGCTTCAGTCTCGGCTTTCCAGGTGAGCGTCGGGCAAGGCGGAACTTCAAATAAAACAGTCAAGCTTCCCAAGAACTTCACCTTGCTCGGTCCGGGACTAGGGTACACTTGTGGCCCTGCAAAGGTTGTGCCATCCACTGTCTACCTCACAGCTGATCGGAGGCGAAAGACTCAAGCACTTATGACATGGAATGTGACATGTACCTATTCACAGTATCTTGCCTCCAAGAACCCAAGCTGTTGCGTTTCGTTTTCGTCTTTCTACAATGAAACTGTAGTTCCATGCCCATCTTGTTCTTGCGGTTGTCATAACAAGAAAGATTGCATCAAGGCAGACTCAAAACTGCTGAAAAAGGCAGGAATCAACACACCAAAAAAGGATAATACACCATTGTTACAGTGCACACACCATATGTGCCCGATCCGAGTACACTGGCATGTGAAGCAAAATTACAAGGACTATTGGCGTGTCAAGATATCCGTCACGAATTTCAACTACCGGCTCAACTACACCGAGTGGACACTCGTTGCACAGCACCCTAATCTCAATAATATCACTCAAGTCTTTAGCTTTGATTACAAGCCCCTTGTTGCTTACCAGTCCATCAATGACACTGGTATGTTCTATGGCATGAAGTTTTACAATGACCTGTTAATGGAAGCCGGTCCATTGGGAAATGTGCAGTCTGAGGTGCTTATGCAGAAAGACAAGAACACCTTCACATTCAAGCAGGGGTGGGCGTTTCCGAGGAAGGTTTACTTCAACGGTGATGAGTGCAGGCTACCCCCTCCCGACGCCTACCCATCTCTTCCAAACTCTGGTCGTGTGAATTCAGTTTCAATCTTAAAAATGGCAGCCTCTGTGCTTCTGATAATGTTTTGTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

384

Amino Acids

43.17

Weight (kDa)

9.25

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 1 - 158 2.8e-62 COBRA-like protein
COB_C PF25079 167 - 356 4.7e-54 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1082
AccI GTMKAC 1 cut(s) 405
AciI CCGC 2 cut(s) 303, 564
AclWI GGATC 1 cut(s) 679
AcsI RAATTY 3 cut(s) 128, 751, 1093
AcuI CTGAAG 2 cut(s) 246, 252
AcyI GRCGYC 2 cut(s) 234, 1059
AdeI CACNNNGTG 1 cut(s) 780
AfaI GTAC 4 cut(s) 20, 368, 466, 693
AfiI CCNNNNNNNGG 4 cut(s) 362, 385, 919, 1082
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 6 cut(s) 133, 312, 757, 991, 1027, 1104
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 6 cut(s) 98, 266, 328, 416, 501, 834
AluI AGCT 6 cut(s) 98, 266, 328, 416, 501, 834
Alw21I GWGCWC 2 cut(s) 100, 668
Alw26I GTCTC 2 cut(s) 111, 277
Alw44I GTGCAC 1 cut(s) 664
AlwI GGATC 1 cut(s) 679
AlwNI CAGNNNCTG 1 cut(s) 1124
AoxI GGCC 1 cut(s) 376
ApaLI GTGCAC 1 cut(s) 664
ApeKI GCWGC 2 cut(s) 222, 1118
ApoI RAATTY 3 cut(s) 128, 751, 1093
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
Asp700I GAANNNNTTC 2 cut(s) 8, 980
AspS9I GGNCC 5 cut(s) 84, 256, 353, 377, 929
AsuC2I CCSGG 3 cut(s) 39, 189, 357
AsuHPI GGTGA 4 cut(s) 205, 298, 334, 1043
AvaII GGWCC 4 cut(s) 84, 256, 353, 929
BaeGI GKGCMC 2 cut(s) 668, 683
BaeI ACNNNNGTAYC 2 cut(s) 358, 391
BanII GRGCYC 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 698, 730
Bbv12I GWGCWC 2 cut(s) 100, 668
BbvI GCAGC 2 cut(s) 209, 1130
BccI CCATC 6 cut(s) 36, 48, 403, 559, 875, 1075
BciT130I CCWGG 1 cut(s) 284
BcnI CCSGG 3 cut(s) 39, 189, 357
BcoDI GTCTC 2 cut(s) 111, 277
BfaI CTAG 2 cut(s) 50, 362
BfmI CTRYAG 1 cut(s) 537
BisI GCNGC 2 cut(s) 223, 1119
BlsI GCNGC 2 cut(s) 224, 1120
Bme1390I CCNGG 4 cut(s) 39, 189, 284, 357
Bme18I GGWCC 4 cut(s) 84, 256, 353, 929
BmgT120I GGNCC 5 cut(s) 84, 256, 353, 377, 929
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 4 cut(s) 39, 189, 284, 357
BmsI GCATC 2 cut(s) 251, 597
BpuEI CTTGAG 2 cut(s) 420, 807
BpuMI CCSGG 3 cut(s) 39, 189, 357
BsaHI GRCGYC 2 cut(s) 234, 1059
BsaJI CCNNGG 3 cut(s) 37, 87, 1010
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 385, 919, 1082
Bse118I RCCGGY 3 cut(s) 21, 762, 926
Bse1I ACTGG 3 cut(s) 701, 862, 883
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 3 cut(s) 37, 87, 1010
BseGI GGATG 3 cut(s) 47, 59, 395
BseLI CCNNNNNNNGG 4 cut(s) 362, 385, 919, 1082
BseMII CTCAG 2 cut(s) 113, 942
BseNI ACTGG 3 cut(s) 701, 862, 883
BseSI GKGCMC 2 cut(s) 668, 683
BseXI GCAGC 2 cut(s) 209, 1130
BsgI GTGCAG 2 cut(s) 965, 1060
BshFI GGCC 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 100, 668
BsiSI CCGG 6 cut(s) 22, 39, 189, 356, 763, 927
BslFI GGGAC 2 cut(s) 264, 372
BslI CCNNNNNNNGG 4 cut(s) 362, 385, 919, 1082
BsmAI GTCTC 2 cut(s) 111, 277
BsmFI GGGAC 2 cut(s) 264, 372
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 3 cut(s) 100, 668, 683
Bsp143I GATC 2 cut(s) 418, 684
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 2 cut(s) 303, 564
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 112, 943
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 1 cut(s) 679
BsrFI RCCGGY 3 cut(s) 21, 762, 926
BsrI ACTGG 3 cut(s) 701, 862, 883
BssAI RCCGGY 3 cut(s) 21, 762, 926
BssECI CCNNGG 3 cut(s) 37, 87, 1010
BssMI GATC 2 cut(s) 418, 684
BssNI GRCGYC 2 cut(s) 234, 1059
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 9 cut(s) 122, 172, 210, 322, 403, 477, 538, 663, 1031
Bst6I CTCTTC 1 cut(s) 1077
BstACI GRCGYC 2 cut(s) 234, 1059
BstC8I GCNNGC 1 cut(s) 1043
BstDEI CTNAG 2 cut(s) 99, 951
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 3 cut(s) 47, 59, 395
BstKTI GATC 2 cut(s) 421, 687
BstMAI GTCTC 2 cut(s) 111, 277
BstMBI GATC 2 cut(s) 418, 684
BstMWI GCNNNNNNNGC 2 cut(s) 231, 706
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 2 cut(s) 465, 704
BstSCI CCNGG 4 cut(s) 37, 187, 282, 355
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 2 cut(s) 668, 683
BstV1I GCAGC 2 cut(s) 209, 1130
BsuRI GGCC 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 3 cut(s) 47, 59, 395
BtsIMutI CAGTG 4 cut(s) 399, 668, 694, 876
Cac8I GCNNGC 1 cut(s) 1043
CaiI CAGNNNCTG 1 cut(s) 1124
Cfr10I RCCGGY 3 cut(s) 21, 762, 926
Cfr13I GGNCC 5 cut(s) 84, 256, 353, 377, 929
CpoI CGGWCCG 1 cut(s) 353
CseI GACGC 3 cut(s) 223, 280, 1067
Csp6I GTAC 4 cut(s) 19, 367, 465, 692
CspI CGGWCCG 1 cut(s) 353
CviAII CATG 8 cut(s) 60, 88, 238, 450, 462, 546, 701, 895
CviQI GTAC 4 cut(s) 19, 367, 465, 692
DdeI CTNAG 2 cut(s) 99, 951
DpnI GATC 2 cut(s) 420, 686
DpnII GATC 2 cut(s) 418, 684
DraIII CACNNNGTG 1 cut(s) 780
Eam1104I CTCTTC 1 cut(s) 1077
EarI CTCTTC 1 cut(s) 1077
EciI GGCGGA 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 100
Eco32I GATATC 1 cut(s) 741
Eco47I GGWCC 4 cut(s) 84, 256, 353, 929
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 2 cut(s) 246, 252
EcoICRI GAGCTC 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 1093
EcoRII CCWGG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 741
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 8 cut(s) 63, 91, 241, 453, 465, 549, 704, 898
FalI AAGNNNNNCTT 4 cut(s) 965, 997, 1007, 1039
FaqI GGGAC 2 cut(s) 264, 372
FatI CATG 8 cut(s) 59, 87, 237, 449, 461, 545, 700, 894
FauNDI CATATG 1 cut(s) 675
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 223, 1119
FokI GGATG 3 cut(s) 54, 66, 382
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 223, 1119
FspBI CTAG 2 cut(s) 50, 362
GluI GCNGC 2 cut(s) 223, 1119
HaeIII GGCC 1 cut(s) 378
HapII CCGG 6 cut(s) 22, 39, 189, 356, 763, 927
HgaI GACGC 3 cut(s) 223, 280, 1067
Hin1I GRCGYC 2 cut(s) 234, 1059
Hin1II CATG 8 cut(s) 63, 91, 241, 453, 465, 549, 704, 898
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 46, 433, 599, 624
HpaII CCGG 6 cut(s) 22, 39, 189, 356, 763, 927
HphI GGTGA 4 cut(s) 205, 298, 334, 1043
Hpy166II GTNNAC 8 cut(s) 178, 213, 369, 406, 666, 694, 783, 1021
Hpy188I TCNGA 6 cut(s) 102, 423, 689, 952, 1011, 1134
Hpy188III TCNNGA 4 cut(s) 82, 736, 748, 1055
Hpy8I GTNNAC 8 cut(s) 178, 213, 369, 406, 666, 694, 783, 1021
Hpy99I CGWCG 2 cut(s) 296, 1061
HpyAV CCTTC 4 cut(s) 64, 270, 991, 1009
HpyCH4III ACNGT 9 cut(s) 122, 172, 210, 322, 403, 477, 538, 663, 1031
HpyCH4V TGCA 8 cut(s) 225, 383, 588, 666, 794, 946, 964, 1041
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 706
HpyF3I CTNAG 2 cut(s) 99, 951
Hsp92I GRCGYC 2 cut(s) 234, 1059
Hsp92II CATG 8 cut(s) 63, 91, 241, 453, 465, 549, 704, 898
Kzo9I GATC 2 cut(s) 418, 684
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 2 cut(s) 209, 1130
LweI GCATC 2 cut(s) 251, 597
MaeI CTAG 2 cut(s) 50, 362
MaeIII GTNAC 3 cut(s) 457, 657, 745
MalI GATC 2 cut(s) 420, 686
MboI GATC 2 cut(s) 418, 684
MboII GAAGA 1 cut(s) 1064
MhlI GDGCHC 3 cut(s) 100, 668, 683
MluCI AATT 4 cut(s) 128, 712, 751, 1093
MlyI GAGTC 3 cut(s) 40, 427, 593
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 7 cut(s) 417, 419, 496, 946, 1005, 1062, 1132
MroXI GAANNNNTTC 2 cut(s) 8, 980
MseI TTAA 2 cut(s) 917, 1109
MslI CAYNNNNRTG 2 cut(s) 699, 881
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 6 cut(s) 22, 39, 189, 356, 763, 927
MspR9I CCNGG 4 cut(s) 39, 189, 284, 357
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 231, 706
NciI CCSGG 3 cut(s) 39, 189, 357
NcoI CCATGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 675
NdeII GATC 2 cut(s) 418, 684
NlaIII CATG 8 cut(s) 63, 91, 241, 453, 465, 549, 704, 898
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 2 cut(s) 457, 745
NspI RCATGY 2 cut(s) 465, 704
PciI ACATGT 1 cut(s) 461
PdmI GAANNNNTTC 2 cut(s) 8, 980
PfeI GAWTC 1 cut(s) 624
PflMI CCANNNNNTGG 1 cut(s) 1082
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 2 cut(s) 224, 1120
PleI GAGTC 3 cut(s) 40, 427, 593
PpsI GAGTC 3 cut(s) 40, 427, 593
PpuMI RGGWCCY 1 cut(s) 256
PscI ACATGT 1 cut(s) 461
Psp124BI GAGCTC 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 5 cut(s) 84, 256, 353, 377, 929
PspPPI RGGWCCY 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 1124
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 4 cut(s) 20, 368, 466, 693
RsaNI GTAC 4 cut(s) 19, 367, 465, 692
RseI CAYNNNNRTG 2 cut(s) 699, 881
Rsr2I CGGWCCG 1 cut(s) 353
RsrII CGGWCCG 1 cut(s) 353
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 917, 1109
SatI GCNGC 2 cut(s) 223, 1119
Sau3AI GATC 2 cut(s) 418, 684
Sau96I GGNCC 5 cut(s) 84, 256, 353, 377, 929
SchI GAGTC 3 cut(s) 40, 427, 593
ScrFI CCNGG 4 cut(s) 39, 189, 284, 357
SduI GDGCHC 3 cut(s) 100, 668, 683
SfaNI GCATC 2 cut(s) 251, 597
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 4 cut(s) 84, 256, 353, 929
SmiMI CAYNNNNRTG 2 cut(s) 699, 881
SmlI CTYRAG 2 cut(s) 435, 822
SmoI CTYRAG 2 cut(s) 435, 822
Sse9I AATT 4 cut(s) 128, 712, 751, 1093
SsiI CCGC 2 cut(s) 303, 564
SspMI CTAG 2 cut(s) 50, 362
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 4 cut(s) 37, 187, 282, 355
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 9 cut(s) 122, 172, 210, 322, 403, 477, 538, 663, 1031
TaqII GACCGA 1 cut(s) 341
TasI AATT 4 cut(s) 128, 712, 751, 1093
TatI WGTACW 1 cut(s) 691
TfiI GAWTC 1 cut(s) 624
Tru1I TTAA 2 cut(s) 917, 1109
Tru9I TTAA 2 cut(s) 917, 1109
TscAI CASTG 4 cut(s) 406, 668, 701, 883
TseFI GTSAC 2 cut(s) 457, 745
TseI GCWGC 2 cut(s) 222, 1118
Tsp45I GTSAC 2 cut(s) 457, 745
TspDTI ATGAA 3 cut(s) 17, 546, 911
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 4 cut(s) 406, 668, 701, 883
Van91I CCANNNNNTGG 1 cut(s) 1082
VneI GTGCAC 1 cut(s) 664
VpaK11BI GGWCC 4 cut(s) 84, 256, 353, 929
XapI RAATTY 3 cut(s) 128, 751, 1093
XceI RCATGY 2 cut(s) 465, 704
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 2 cut(s) 8, 980
XspI CTAG 2 cut(s) 50, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.