Rh2AG580400

COBRA-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
80953498 .. 80957661
4164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG580400.1

Sequence Viewer

Length: 1281 bp
ATGGATGCAGCTGCATTTGATCCCTTGGATCCAAATGGAAACATAACCATACGATGGGACATAATGTCTTGGACGCCAGATGGCTATGTGGCAACTGTAACCATAAACAACTTCCAAATGTATCGGCACATAATGAGCCCTGGGTGGACATTAGGTTGGACATGGGCTAAAAAAGAAGTGATATGGTCCGCGGTGGGAGCACAAACCACCGAGCAAGGTGACTGCTCCAAGTTCAAAGGGAACATACCTCATTGTTGCAAGAAAACCCCCACAGTTGTGGACTTGCTTCCCGGCGTGCCTTACAACCAGCAATACCAAAACTGTTGCAAAGGCGGAGTAGTGGGTGCTTGGGGCCAAGATCCTTCAGCTTCTGTCTCGGCCTTCCAGCTGAGTGTTGGAATGGCCGGTACTTCAAACAAAACTGTGAAACTCCCCAGGAACTTCACTCTGCTAGGACCAGGTCCAGGGTACACTTGTGGCAAGGCTAAAGTTGTGCCTCCCACCGTCTTTTTGTCACCTGATCGTCGTCGTAAGACTCAAGCTCTCATGACTTGGAATGTGACTTGTACGTATTCACAGCTTCTGGCCCGTAAAAACCCAAGTTGTTGTGTATCACTCTCGTCTTTCTACAATGAAACAATTGTTCCCTGCCCATCTTGTTCTTGTGGTTGCCATAACAAGGACAGTTGTGTCAAAAGCAACTCGAAAATTCTGAGCATGGTGGGAGTTAACACCCCAAAGAAAGACAATACCCCTTTATTGCAGTGCACACACCACATGTGCCCGGTAAGGATTCACTGGCATGTGAAAGTGAATTACAAGGAGTACTGGCGTGTGAAGGTTTCGGTTACAAACTTTAACTATCGGATGAACTACACACTTTGGACTCTGGTCATTCAGCACCCTAATCTCAACAATGTCACACAAGTTTTCAGCTTTGACTACAAGCCTCTTGTTCCTTATGAGTCCATAAATGACACTGGTATGTTCTATGGATTGAAATACTTCAATGAACAATTAATGGAAGCCGGGCCATTTGGGAACGTTCAGTCGGAAATTCTTCTTAAGAAGGACATAAACACATTTACTTTCAAGGAGGGGTGGGCATTTCCTCGCAAAGTTTACTTCAATGGTGATGAGTGCCAGATGCCCCCACCTGATACATACCCATTTCTGCCTAATTCTGCCCATCAAAATCTACTTTCATTCTCAGCATTGCATATTAAACTTGCCAGTAGTTACTTGAATAGAAAAAATGTAATTGAAAAAAACCTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

48.0

Weight (kDa)

9.01

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 29 - 192 6.1e-67 COBRA-like protein
COB_C PF25079 201 - 390 1.1e-53 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 54
AccII CGCG 1 cut(s) 191
AciI CCGC 3 cut(s) 189, 191, 333
AclI AACGTT 1 cut(s) 1044
AclWI GGATC 4 cut(s) 14, 23, 36, 353
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 2 cut(s) 708, 1056
AcuI CTGAAG 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 4 cut(s) 409, 470, 568, 827
AfiI CCNNNNNNNGG 3 cut(s) 54, 464, 679
AflII CTTAAG 1 cut(s) 1064
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 8 cut(s) 235, 414, 1000, 1009, 1093, 1129, 1246, 1265
AhdI GACNNNNNGTC 1 cut(s) 64
AjnI CCWGG 4 cut(s) 139, 434, 457, 463
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 6 cut(s) 11, 368, 388, 542, 580, 936
AluI AGCT 6 cut(s) 11, 368, 388, 542, 580, 936
Alw21I GWGCWC 2 cut(s) 202, 770
Alw26I GTCTC 1 cut(s) 379
Alw44I GTGCAC 1 cut(s) 766
AlwI GGATC 4 cut(s) 14, 23, 36, 353
AlwNI CAGNNNCTG 2 cut(s) 371, 583
AoxI GGCC 5 cut(s) 352, 378, 402, 585, 1031
ApaLI GTGCAC 1 cut(s) 766
ApeKI GCWGC 2 cut(s) 8, 11
ApoI RAATTY 2 cut(s) 708, 1056
AseI ATTAAT 1 cut(s) 1019
Asp700I GAANNNNTTC 2 cut(s) 1004, 1059
AspS9I GGNCC 6 cut(s) 186, 352, 455, 461, 586, 1031
AsuC2I CCSGG 3 cut(s) 291, 785, 1030
AsuHPI GGTGA 3 cut(s) 230, 507, 1145
AvaII GGWCC 3 cut(s) 186, 455, 461
BaeGI GKGCMC 2 cut(s) 770, 785
BaeI ACNNNNGTAYC 2 cut(s) 460, 493
BamHI GGATCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 2 cut(s) 202, 770
BbvI GCAGC 1 cut(s) 20
BccI CCATC 4 cut(s) 48, 74, 661, 1197
BciT130I CCWGG 4 cut(s) 141, 436, 459, 465
BcnI CCSGG 3 cut(s) 291, 785, 1030
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 452
BfrI CTTAAG 1 cut(s) 1064
BisI GCNGC 2 cut(s) 9, 12
BlsI GCNGC 2 cut(s) 10, 13
BmcAI AGTACT 1 cut(s) 827
Bme1390I CCNGG 7 cut(s) 141, 291, 436, 459, 465, 785, 1030
Bme18I GGWCC 3 cut(s) 186, 455, 461
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 6 cut(s) 186, 352, 455, 461, 586, 1031
BmiI GGNNCC 2 cut(s) 30, 353
BmrFI CCNGG 7 cut(s) 141, 291, 436, 459, 465, 785, 1030
BmsI GCATC 1 cut(s) 1137
BoxI GACNNNNGTC 1 cut(s) 890
BpuEI CTTGAG 1 cut(s) 522
BpuMI CCSGG 3 cut(s) 291, 785, 1030
BsaAI YACGTR 1 cut(s) 570
BsaHI GRCGYC 1 cut(s) 74
BsaJI CCNNGG 6 cut(s) 24, 139, 140, 189, 434, 464
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 464, 679
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 4 cut(s) 803, 833, 985, 1233
Bse3DI GCAATG 1 cut(s) 1214
BseBI CCWGG 4 cut(s) 141, 436, 459, 465
BseDI CCNNGG 6 cut(s) 24, 139, 140, 189, 434, 464
BseGI GGATG 2 cut(s) 10, 873
BseLI CCNNNNNNNGG 3 cut(s) 54, 464, 679
BseMI GCAATG 1 cut(s) 1214
BseMII CTCAG 3 cut(s) 380, 704, 1224
BseNI ACTGG 4 cut(s) 803, 833, 985, 1233
BseSI GKGCMC 2 cut(s) 770, 785
BseXI GCAGC 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 5 cut(s) 354, 380, 404, 587, 1033
BsiHKAI GWGCWC 2 cut(s) 202, 770
BsiSI CCGG 4 cut(s) 291, 405, 785, 1029
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 3 cut(s) 54, 464, 679
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 5 cut(s) 354, 380, 404, 587, 1033
Bsp1286I GDGCHC 4 cut(s) 140, 202, 770, 785
Bsp143I GATC 4 cut(s) 19, 28, 358, 520
BspACI CCGC 3 cut(s) 189, 191, 333
BspANI GGCC 5 cut(s) 354, 380, 404, 587, 1033
BspCNI CTCAG 3 cut(s) 381, 705, 1223
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 30, 353
BspPI GGATC 4 cut(s) 14, 23, 36, 353
BspTI CTTAAG 1 cut(s) 1064
BsrDI GCAATG 1 cut(s) 1214
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 4 cut(s) 803, 833, 985, 1233
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 6 cut(s) 24, 139, 140, 189, 434, 464
BssMI GATC 4 cut(s) 19, 28, 358, 520
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 4 cut(s) 141, 436, 459, 465
Bst4CI ACNGT 6 cut(s) 97, 274, 323, 424, 505, 686
BstACI GRCGYC 1 cut(s) 74
BstAFI CTTAAG 1 cut(s) 1064
BstBAI YACGTR 1 cut(s) 570
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 389, 713, 1210
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 10, 873
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 4 cut(s) 22, 31, 361, 523
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 4 cut(s) 19, 28, 358, 520
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 4 cut(s) 141, 436, 459, 465
BstNSI RCATGY 2 cut(s) 781, 806
BstPAI GACNNNNGTC 1 cut(s) 890
BstSCI CCNGG 7 cut(s) 139, 289, 434, 457, 463, 783, 1028
BstSLI GKGCMC 2 cut(s) 770, 785
BstSNI TACGTA 1 cut(s) 570
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 20
BstX2I RGATCY 2 cut(s) 28, 358
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 2 cut(s) 28, 358
BsuRI GGCC 5 cut(s) 354, 380, 404, 587, 1033
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 2 cut(s) 10, 873
BtsI GCAGTG 1 cut(s) 770
BtsIMutI CAGTG 3 cut(s) 770, 796, 978
Cac8I GCNNGC 1 cut(s) 296
CaiI CAGNNNCTG 2 cut(s) 371, 583
CciI TCATGA 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 6 cut(s) 186, 352, 455, 461, 586, 1031
Cfr42I CCGCGG 1 cut(s) 192
CseI GACGC 1 cut(s) 82
CsiI ACCWGGT 1 cut(s) 457
Csp6I GTAC 4 cut(s) 408, 469, 567, 826
CviAII CATG 5 cut(s) 162, 547, 718, 778, 803
CviQI GTAC 4 cut(s) 408, 469, 567, 826
DdeI CTNAG 3 cut(s) 389, 713, 1210
DpnI GATC 4 cut(s) 21, 30, 360, 522
DpnII GATC 4 cut(s) 19, 28, 358, 520
DrdI GACNNNNNNGTC 1 cut(s) 689
DriI GACNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 689
EaeI YGGCCR 1 cut(s) 402
Eam1105I GACNNNNNGTC 1 cut(s) 64
EciI GGCGGA 1 cut(s) 348
Eco105I TACGTA 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 3 cut(s) 186, 455, 461
Eco57I CTGAAG 1 cut(s) 348
EcoRII CCWGG 4 cut(s) 139, 434, 457, 463
EcoT14I CCWWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 5 cut(s) 165, 550, 721, 781, 806
FaqI GGGAC 1 cut(s) 71
FatI CATG 5 cut(s) 161, 546, 717, 777, 802
Fnu4HI GCNGC 2 cut(s) 9, 12
FokI GGATG 2 cut(s) 17, 880
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 9, 12
FspBI CTAG 1 cut(s) 452
GluI GCNGC 2 cut(s) 9, 12
HaeIII GGCC 5 cut(s) 354, 380, 404, 587, 1033
HapII CCGG 4 cut(s) 291, 405, 785, 1029
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 5 cut(s) 165, 550, 721, 781, 806
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 4 cut(s) 535, 793, 886, 965
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 4 cut(s) 291, 405, 785, 1029
HphI GGTGA 3 cut(s) 230, 507, 1145
Hpy166II GTNNAC 6 cut(s) 147, 280, 471, 730, 768, 1123
Hpy188I TCNGA 3 cut(s) 714, 867, 1054
Hpy188III TCNNGA 1 cut(s) 547
Hpy8I GTNNAC 6 cut(s) 147, 280, 471, 730, 768, 1123
Hpy99I CGWCG 2 cut(s) 528, 531
HpyAV CCTTC 4 cut(s) 372, 391, 832, 1063
HpyCH4III ACNGT 6 cut(s) 97, 274, 323, 424, 505, 686
HpyCH4IV ACGT 2 cut(s) 569, 1044
HpyCH4V TGCA 7 cut(s) 8, 14, 258, 327, 763, 768, 1219
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 389, 713, 1210
HpySE526I ACGT 2 cut(s) 569, 1044
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 5 cut(s) 165, 550, 721, 781, 806
KspAI GTTAAC 1 cut(s) 730
KspI CCGCGG 1 cut(s) 192
Kzo9I GATC 4 cut(s) 19, 28, 358, 520
LmnI GCTCC 2 cut(s) 197, 230
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 1137
MabI ACCWGGT 1 cut(s) 457
MaeI CTAG 1 cut(s) 452
MaeII ACGT 2 cut(s) 569, 1044
MaeIII GTNAC 7 cut(s) 97, 218, 513, 559, 847, 919, 1238
MalI GATC 4 cut(s) 21, 30, 360, 522
MboI GATC 4 cut(s) 19, 28, 358, 520
MboII GAAGA 1 cut(s) 1052
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 2 cut(s) 28, 358
MhlI GDGCHC 4 cut(s) 140, 202, 770, 785
MluCI AATT 7 cut(s) 639, 708, 814, 1016, 1056, 1180, 1260
MlyI GAGTC 3 cut(s) 529, 880, 974
MmeI TCCRAC 3 cut(s) 137, 376, 1032
MnlI CCTC 5 cut(s) 258, 507, 960, 1090, 1122
MroXI GAANNNNTTC 2 cut(s) 1004, 1059
MseI TTAA 5 cut(s) 729, 858, 1019, 1065, 1224
MslI CAYNNNNRTG 3 cut(s) 275, 801, 983
MspA1I CMGCKG 3 cut(s) 11, 191, 388
MspCI CTTAAG 1 cut(s) 1064
MspI CCGG 4 cut(s) 291, 405, 785, 1029
MspR9I CCNGG 7 cut(s) 141, 291, 436, 459, 465, 785, 1030
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 4 cut(s) 141, 436, 459, 465
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 3 cut(s) 291, 785, 1030
NdeII GATC 4 cut(s) 19, 28, 358, 520
NlaIII CATG 5 cut(s) 165, 550, 721, 781, 806
NlaIV GGNNCC 2 cut(s) 30, 353
NmeAIII GCCGAG 1 cut(s) 356
NmuCI GTSAC 4 cut(s) 218, 513, 559, 919
NspI RCATGY 2 cut(s) 781, 806
OliI CACNNNNGTG 1 cut(s) 275
PagI TCATGA 1 cut(s) 546
PasI CCCWGGG 1 cut(s) 140
PciI ACATGT 1 cut(s) 777
PdmI GAANNNNTTC 2 cut(s) 1004, 1059
PfeI GAWTC 1 cut(s) 793
PflFI GACNNNGTC 1 cut(s) 459
PflMI CCANNNNNTGG 1 cut(s) 54
PkrI GCNGC 2 cut(s) 10, 13
PleI GAGTC 3 cut(s) 529, 880, 973
PpsI GAGTC 3 cut(s) 529, 880, 973
Ppu21I YACGTR 1 cut(s) 570
PscI ACATGT 1 cut(s) 777
PshAI GACNNNNGTC 1 cut(s) 890
PshBI ATTAAT 1 cut(s) 1019
Psp1406I AACGTT 1 cut(s) 1044
Psp6I CCWGG 4 cut(s) 139, 434, 457, 463
PspGI CCWGG 4 cut(s) 139, 434, 457, 463
PspN4I GGNNCC 2 cut(s) 30, 353
PspPI GGNCC 6 cut(s) 186, 352, 455, 461, 586, 1031
PstNI CAGNNNCTG 2 cut(s) 371, 583
PsuI RGATCY 2 cut(s) 28, 358
PsyI GACNNNGTC 1 cut(s) 459
PvuII CAGCTG 2 cut(s) 11, 388
RsaI GTAC 4 cut(s) 409, 470, 568, 827
RsaNI GTAC 4 cut(s) 408, 469, 567, 826
RseI CAYNNNNRTG 3 cut(s) 275, 801, 983
SacII CCGCGG 1 cut(s) 192
SaqAI TTAA 5 cut(s) 729, 858, 1019, 1065, 1224
SatI GCNGC 2 cut(s) 9, 12
Sau3AI GATC 4 cut(s) 19, 28, 358, 520
Sau96I GGNCC 6 cut(s) 186, 352, 455, 461, 586, 1031
ScaI AGTACT 1 cut(s) 827
SchI GAGTC 3 cut(s) 529, 880, 974
ScrFI CCNGG 7 cut(s) 141, 291, 436, 459, 465, 785, 1030
SduI GDGCHC 4 cut(s) 140, 202, 770, 785
SexAI ACCWGGT 1 cut(s) 457
SfaNI GCATC 1 cut(s) 1137
Sfr303I CCGCGG 1 cut(s) 192
SgrBI CCGCGG 1 cut(s) 192
SinI GGWCC 3 cut(s) 186, 455, 461
SmiMI CAYNNNNRTG 3 cut(s) 275, 801, 983
SmlI CTYRAG 2 cut(s) 537, 1064
SmoI CTYRAG 2 cut(s) 537, 1064
SnaBI TACGTA 1 cut(s) 570
Sse9I AATT 7 cut(s) 639, 708, 814, 1016, 1056, 1180, 1260
SsiI CCGC 3 cut(s) 189, 191, 333
SspMI CTAG 1 cut(s) 452
StyD4I CCNGG 7 cut(s) 139, 289, 434, 457, 463, 783, 1028
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 6 cut(s) 97, 274, 323, 424, 505, 686
TaiI ACGT 2 cut(s) 572, 1047
TaqI TCGA 1 cut(s) 704
TasI AATT 7 cut(s) 639, 708, 814, 1016, 1056, 1180, 1260
TatI WGTACW 1 cut(s) 825
TfiI GAWTC 1 cut(s) 793
Tru1I TTAA 5 cut(s) 729, 858, 1019, 1065, 1224
Tru9I TTAA 5 cut(s) 729, 858, 1019, 1065, 1224
TscAI CASTG 3 cut(s) 770, 803, 985
TseFI GTSAC 4 cut(s) 218, 513, 559, 919
TseI GCWGC 2 cut(s) 8, 11
Tsp45I GTSAC 4 cut(s) 218, 513, 559, 919
TspDTI ATGAA 4 cut(s) 648, 884, 1026, 1194
TspRI CASTG 3 cut(s) 770, 803, 985
Tth111I GACNNNGTC 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 54
Vha464I CTTAAG 1 cut(s) 1064
VneI GTGCAC 1 cut(s) 766
VpaK11BI GGWCC 3 cut(s) 186, 455, 461
VspI ATTAAT 1 cut(s) 1019
XapI RAATTY 2 cut(s) 708, 1056
XceI RCATGY 2 cut(s) 781, 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XmnI GAANNNNTTC 2 cut(s) 1004, 1059
XspI CTAG 1 cut(s) 452
ZrmI AGTACT 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.