RchiOBHm_Chr7g0183391

COBRA-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
4295505 .. 4297421
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16362

Sequence Viewer

Length: 1368 bp
ATGGAACTCAATAACCAGGCTAATCCATCTCACAAAATCCACCTTGACGTGGTAACATGTTGTTCTTGGCTGAAGATCACATTCTTGGCCATGTTATTTTGTGTGCTAGTATCACCTACAGCGGCATATGATCCGTTGGATCCAACCGGAAACATAACGATCAAATGGGATGTCGTGTCTTGGACAGCAGATGGTTATGTTGCTGCAGTGACCATGAACAACTTCCAAATGTACCGGCAAATCGCTAACCCCGGATGGACTCTAGGATGGACATGGGCAAAGAAGGAAGTAATCTGGACCATGGTGGGAGCTCAGACCACAGAGCAAGGAGACTGTTCCAAATTCAAAGGAAACACACCACATTGTTGTAAGAAAACTCCAACAGTTGTTGACTTGCTACCCGGAGTTCCTTACAACCAACAGTTCACCAACTGCTGCAAAGGTGGCGTCATGGCATCTTGGGGACAGGACCCTTCAGCTTCAGTCTCGGCTTTCCAGGTGAGCGTCGGGCAAGGCGGAACTTCAAATAAAACAGTCAAGCTTCCCAAGAACTTCACCTTGCTCGGTCCGGGACTAGGGTACACTTGTGGCCCTGCAAAGGTTGTGCCATCCACTGTCTACCTCACAGCTGATCGGAGGCGAAAGACTCAAGCACTTATGACATGGAATGTGACATGTACCTATTCACAGTATCTTGCCTCCAAGAATCCAAGCTGTTGCGTTTCGTTTTCGTCTTTCTACAATGAAACTGTAGTTCCATGCCCATCTTGTTCTTGCGGTTGTCATAACAAGAAAGATTGCATCAAGGCAGACTCAAAACTGCTGAAAAAGGCAGGAATCAACACACCAAAAAAGGACAATACACCATTGTTACAGTGCACACACCATATGTGCCCGATCCGAGTACACTGGCATGTGAAGCAAAATTACAAGGACTATTGGCGTGTCAAGATATCCGTCACGAATTTCAACTACCGGCTCAACTACACCGAGTGGACACTCGTTGCACAGCACCCTAATCTCAATAATATCACTCAAGTCTTTAGCTTTGATTACAAGCCCCTTGTTGCTTACCAGTCCATCAATGACACTGGTATGTTCTATGGCATGAAGTTTTACAATGACCTGTTAATGGAAGCCGGTCCATTGGGAAATGTGCAGTCTGAGGTGCTTATGCAGAAAGACAAGAACACCTTCACATTCAAGCAGGGGTGGGCGTTTCCGAGGAAGGTTTACTTCAACGGTGATGAGTGCAGGCTACCCCCTCCCGACGCCTACCCATCTCTTCCAAACTCTGGTCGTGTGAATTCAGTTTCAATCTTAAAAATGGCAGCCTCTGTGCTTCTGATAATGTTTTGTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

50.96

Weight (kDa)

9.03

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 66 - 229 1.8e-65 COBRA-like protein
COB_C PF25079 238 - 427 6.5e-54 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1295
AccI GTMKAC 1 cut(s) 618
AciI CCGC 3 cut(s) 122, 516, 777
AclWI GGATC 4 cut(s) 125, 134, 147, 892
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 3 cut(s) 341, 964, 1306
AcuI CTGAAG 3 cut(s) 92, 459, 465
AcyI GRCGYC 2 cut(s) 447, 1272
AdeI CACNNNGTG 1 cut(s) 993
AfaI GTAC 4 cut(s) 233, 581, 679, 906
AfiI CCNNNNNNNGG 5 cut(s) 49, 575, 598, 1132, 1295
AflIII ACRYGT 2 cut(s) 56, 674
AgsI TTSAA 6 cut(s) 346, 525, 970, 1204, 1240, 1317
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 15, 495
AluBI AGCT 6 cut(s) 311, 479, 541, 629, 714, 1047
AluI AGCT 6 cut(s) 311, 479, 541, 629, 714, 1047
Alw21I GWGCWC 2 cut(s) 313, 881
Alw26I GTCTC 2 cut(s) 324, 490
Alw44I GTGCAC 1 cut(s) 877
AlwI GGATC 4 cut(s) 125, 134, 147, 892
AlwNI CAGNNNCTG 1 cut(s) 1337
AoxI GGCC 2 cut(s) 87, 589
ApaLI GTGCAC 1 cut(s) 877
ApeKI GCWGC 3 cut(s) 203, 435, 1331
ApoI RAATTY 3 cut(s) 341, 964, 1306
ArsI GACNNNNNNTTYG 4 cut(s) 156, 188, 432, 464
Asp700I GAANNNNTTC 2 cut(s) 221, 1193
AspS9I GGNCC 5 cut(s) 297, 469, 566, 590, 1142
AsuC2I CCSGG 3 cut(s) 252, 402, 570
AsuHPI GGTGA 5 cut(s) 105, 418, 511, 547, 1256
AvaII GGWCC 4 cut(s) 297, 469, 566, 1142
BaeGI GKGCMC 2 cut(s) 881, 896
BaeI ACNNNNGTAYC 2 cut(s) 571, 604
BalI TGGCCA 1 cut(s) 89
BamHI GGATCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 911, 943
Bbv12I GWGCWC 2 cut(s) 313, 881
BbvI GCAGC 3 cut(s) 190, 422, 1343
BccI CCATC 8 cut(s) 34, 185, 249, 261, 616, 772, 1088, 1288
BciT130I CCWGG 2 cut(s) 17, 497
BcnI CCSGG 3 cut(s) 252, 402, 570
BcoDI GTCTC 2 cut(s) 324, 490
BfaI CTAG 3 cut(s) 107, 263, 575
BfmI CTRYAG 3 cut(s) 117, 204, 750
BisI GCNGC 4 cut(s) 123, 204, 436, 1332
BlsI GCNGC 4 cut(s) 124, 205, 437, 1333
Bme1390I CCNGG 5 cut(s) 17, 252, 402, 497, 570
Bme18I GGWCC 4 cut(s) 297, 469, 566, 1142
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 5 cut(s) 297, 469, 566, 590, 1142
BmiI GGNNCC 2 cut(s) 141, 471
BmrFI CCNGG 5 cut(s) 17, 252, 402, 497, 570
BmsI GCATC 2 cut(s) 464, 810
BpuEI CTTGAG 2 cut(s) 633, 1020
BpuMI CCSGG 3 cut(s) 252, 402, 570
BsaHI GRCGYC 2 cut(s) 447, 1272
BsaJI CCNNGG 3 cut(s) 250, 300, 1223
BsaWI WCCGGW 1 cut(s) 146
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 575, 598, 1132, 1295
Bse118I RCCGGY 3 cut(s) 234, 975, 1139
Bse1I ACTGG 3 cut(s) 914, 1075, 1096
BseBI CCWGG 2 cut(s) 17, 497
BseDI CCNNGG 3 cut(s) 250, 300, 1223
BseGI GGATG 4 cut(s) 175, 260, 272, 608
BseLI CCNNNNNNNGG 5 cut(s) 49, 575, 598, 1132, 1295
BseMII CTCAG 2 cut(s) 326, 1155
BseNI ACTGG 3 cut(s) 914, 1075, 1096
BseSI GKGCMC 2 cut(s) 881, 896
BseXI GCAGC 3 cut(s) 190, 422, 1343
BsgI GTGCAG 2 cut(s) 1178, 1273
BshFI GGCC 2 cut(s) 89, 591
BsiHKAI GWGCWC 2 cut(s) 313, 881
BsiSI CCGG 7 cut(s) 147, 235, 252, 402, 569, 976, 1140
BslFI GGGAC 2 cut(s) 477, 585
BslI CCNNNNNNNGG 5 cut(s) 49, 575, 598, 1132, 1295
BsmAI GTCTC 2 cut(s) 324, 490
BsmFI GGGAC 2 cut(s) 477, 585
BsnI GGCC 2 cut(s) 89, 591
Bsp1286I GDGCHC 3 cut(s) 313, 881, 896
Bsp143I GATC 6 cut(s) 75, 130, 139, 159, 631, 897
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 3 cut(s) 122, 516, 777
BspANI GGCC 2 cut(s) 89, 591
BspCNI CTCAG 2 cut(s) 325, 1156
BspLI GGNNCC 2 cut(s) 141, 471
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 4 cut(s) 125, 134, 147, 892
BsrFI RCCGGY 3 cut(s) 234, 975, 1139
BsrI ACTGG 3 cut(s) 914, 1075, 1096
BssAI RCCGGY 3 cut(s) 234, 975, 1139
BssECI CCNNGG 3 cut(s) 250, 300, 1223
BssMI GATC 6 cut(s) 75, 130, 139, 159, 631, 897
BssNI GRCGYC 2 cut(s) 447, 1272
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 17, 497
Bst4CI ACNGT 9 cut(s) 335, 385, 423, 535, 616, 690, 751, 876, 1244
Bst6I CTCTTC 1 cut(s) 1290
BstACI GRCGYC 2 cut(s) 447, 1272
BstC8I GCNNGC 1 cut(s) 1256
BstDEI CTNAG 2 cut(s) 312, 1164
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 4 cut(s) 175, 260, 272, 608
BstKTI GATC 6 cut(s) 78, 133, 142, 162, 634, 900
BstMAI GTCTC 2 cut(s) 324, 490
BstMBI GATC 6 cut(s) 75, 130, 139, 159, 631, 897
BstMWI GCNNNNNNNGC 2 cut(s) 444, 919
BstNI CCWGG 2 cut(s) 17, 497
BstNSI RCATGY 3 cut(s) 60, 678, 917
BstSCI CCNGG 5 cut(s) 15, 250, 400, 495, 568
BstSFI CTRYAG 3 cut(s) 117, 204, 750
BstSLI GKGCMC 2 cut(s) 881, 896
BstV1I GCAGC 3 cut(s) 190, 422, 1343
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 2 cut(s) 89, 591
BtgI CCRYGG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 4 cut(s) 175, 260, 272, 608
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 5 cut(s) 213, 612, 881, 907, 1089
Cac8I GCNNGC 1 cut(s) 1256
CaiI CAGNNNCTG 1 cut(s) 1337
Cfr10I RCCGGY 3 cut(s) 234, 975, 1139
Cfr13I GGNCC 5 cut(s) 297, 469, 566, 590, 1142
CpoI CGGWCCG 1 cut(s) 566
CseI GACGC 3 cut(s) 436, 493, 1280
Csp6I GTAC 4 cut(s) 232, 580, 678, 905
CspI CGGWCCG 1 cut(s) 566
CviQI GTAC 4 cut(s) 232, 580, 678, 905
DdeI CTNAG 2 cut(s) 312, 1164
DpnI GATC 6 cut(s) 77, 132, 141, 161, 633, 899
DpnII GATC 6 cut(s) 75, 130, 139, 159, 631, 897
DraIII CACNNNGTG 1 cut(s) 993
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 1290
EarI CTCTTC 1 cut(s) 1290
EciI GGCGGA 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 313
Eco32I GATATC 1 cut(s) 954
Eco47I GGWCC 4 cut(s) 297, 469, 566, 1142
Eco53kI GAGCTC 1 cut(s) 311
Eco57I CTGAAG 3 cut(s) 92, 459, 465
EcoICRI GAGCTC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 1306
EcoRII CCWGG 2 cut(s) 15, 495
EcoRV GATATC 1 cut(s) 954
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 300
FalI AAGNNNNNCTT 4 cut(s) 1178, 1210, 1220, 1252
FaqI GGGAC 2 cut(s) 477, 585
FauNDI CATATG 2 cut(s) 127, 888
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 4 cut(s) 123, 204, 436, 1332
FokI GGATG 4 cut(s) 182, 267, 279, 595
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 4 cut(s) 123, 204, 436, 1332
FspBI CTAG 3 cut(s) 107, 263, 575
GluI GCNGC 4 cut(s) 123, 204, 436, 1332
HaeIII GGCC 2 cut(s) 89, 591
HapII CCGG 7 cut(s) 147, 235, 252, 402, 569, 976, 1140
HgaI GACGC 3 cut(s) 436, 493, 1280
Hin1I GRCGYC 2 cut(s) 447, 1272
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 5 cut(s) 259, 646, 706, 812, 837
HpaII CCGG 7 cut(s) 147, 235, 252, 402, 569, 976, 1140
HphI GGTGA 5 cut(s) 105, 418, 511, 547, 1256
Hpy166II GTNNAC 8 cut(s) 391, 426, 582, 619, 879, 907, 996, 1234
Hpy188I TCNGA 6 cut(s) 315, 636, 902, 1165, 1224, 1347
Hpy188III TCNNGA 4 cut(s) 295, 949, 961, 1268
Hpy8I GTNNAC 8 cut(s) 391, 426, 582, 619, 879, 907, 996, 1234
Hpy99I CGWCG 2 cut(s) 509, 1274
HpyAV CCTTC 4 cut(s) 277, 483, 1204, 1222
HpyCH4III ACNGT 9 cut(s) 335, 385, 423, 535, 616, 690, 751, 876, 1244
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 9 cut(s) 206, 438, 596, 801, 879, 1007, 1159, 1177, 1254
HpyF10VI GCNNNNNNNGC 2 cut(s) 444, 919
HpyF3I CTNAG 2 cut(s) 312, 1164
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 2 cut(s) 447, 1272
Kzo9I GATC 6 cut(s) 75, 130, 139, 159, 631, 897
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 3 cut(s) 190, 422, 1343
LweI GCATC 2 cut(s) 464, 810
MaeI CTAG 3 cut(s) 107, 263, 575
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 5 cut(s) 52, 208, 670, 870, 958
MalI GATC 6 cut(s) 77, 132, 141, 161, 633, 899
MboI GATC 6 cut(s) 75, 130, 139, 159, 631, 897
MboII GAAGA 2 cut(s) 85, 1277
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 3 cut(s) 313, 881, 896
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 4 cut(s) 341, 925, 964, 1306
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 3 cut(s) 253, 640, 806
MmeI TCCRAC 3 cut(s) 117, 167, 404
MnlI CCTC 7 cut(s) 630, 632, 709, 1159, 1218, 1275, 1345
Mox20I TGGCCA 1 cut(s) 89
MroXI GAANNNNTTC 2 cut(s) 221, 1193
MscI TGGCCA 1 cut(s) 89
MseI TTAA 2 cut(s) 1130, 1322
MslI CAYNNNNRTG 2 cut(s) 912, 1094
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 2 cut(s) 122, 629
MspI CCGG 7 cut(s) 147, 235, 252, 402, 569, 976, 1140
MspR9I CCNGG 5 cut(s) 17, 252, 402, 497, 570
MvaI CCWGG 2 cut(s) 17, 497
MwoI GCNNNNNNNGC 2 cut(s) 444, 919
NciI CCSGG 3 cut(s) 252, 402, 570
NcoI CCATGG 1 cut(s) 300
NdeI CATATG 2 cut(s) 127, 888
NdeII GATC 6 cut(s) 75, 130, 139, 159, 631, 897
NlaIV GGNNCC 2 cut(s) 141, 471
NmeAIII GCCGAG 1 cut(s) 467
NmuCI GTSAC 3 cut(s) 208, 670, 958
NspI RCATGY 3 cut(s) 60, 678, 917
PciI ACATGT 2 cut(s) 56, 674
PdmI GAANNNNTTC 2 cut(s) 221, 1193
PfeI GAWTC 2 cut(s) 706, 837
PflMI CCANNNNNTGG 1 cut(s) 1295
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 4 cut(s) 124, 205, 437, 1333
PleI GAGTC 3 cut(s) 253, 640, 806
PpsI GAGTC 3 cut(s) 253, 640, 806
PpuMI RGGWCCY 1 cut(s) 469
PscI ACATGT 2 cut(s) 56, 674
Psp124BI GAGCTC 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 2 cut(s) 15, 495
PspGI CCWGG 2 cut(s) 15, 495
PspN4I GGNNCC 2 cut(s) 141, 471
PspPI GGNCC 5 cut(s) 297, 469, 566, 590, 1142
PspPPI RGGWCCY 1 cut(s) 469
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 1337
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 4 cut(s) 233, 581, 679, 906
RsaNI GTAC 4 cut(s) 232, 580, 678, 905
RseI CAYNNNNRTG 2 cut(s) 912, 1094
Rsr2I CGGWCCG 1 cut(s) 566
RsrII CGGWCCG 1 cut(s) 566
SacI GAGCTC 1 cut(s) 313
SaqAI TTAA 2 cut(s) 1130, 1322
SatI GCNGC 4 cut(s) 123, 204, 436, 1332
Sau3AI GATC 6 cut(s) 75, 130, 139, 159, 631, 897
Sau96I GGNCC 5 cut(s) 297, 469, 566, 590, 1142
SchI GAGTC 3 cut(s) 253, 640, 806
ScrFI CCNGG 5 cut(s) 17, 252, 402, 497, 570
SduI GDGCHC 3 cut(s) 313, 881, 896
SfaNI GCATC 2 cut(s) 464, 810
SfcI CTRYAG 3 cut(s) 117, 204, 750
SinI GGWCC 4 cut(s) 297, 469, 566, 1142
SmiMI CAYNNNNRTG 2 cut(s) 912, 1094
SmlI CTYRAG 2 cut(s) 648, 1035
SmoI CTYRAG 2 cut(s) 648, 1035
Sse9I AATT 4 cut(s) 341, 925, 964, 1306
SsiI CCGC 3 cut(s) 122, 516, 777
SspMI CTAG 3 cut(s) 107, 263, 575
SstI GAGCTC 1 cut(s) 313
StyD4I CCNGG 5 cut(s) 15, 250, 400, 495, 568
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 9 cut(s) 335, 385, 423, 535, 616, 690, 751, 876, 1244
TaiI ACGT 1 cut(s) 51
TaqII GACCGA 1 cut(s) 554
TasI AATT 4 cut(s) 341, 925, 964, 1306
TatI WGTACW 1 cut(s) 904
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 2 cut(s) 706, 837
Tru1I TTAA 2 cut(s) 1130, 1322
Tru9I TTAA 2 cut(s) 1130, 1322
TscAI CASTG 5 cut(s) 213, 619, 881, 914, 1096
TseFI GTSAC 3 cut(s) 208, 670, 958
TseI GCWGC 3 cut(s) 203, 435, 1331
Tsp45I GTSAC 3 cut(s) 208, 670, 958
TspDTI ATGAA 3 cut(s) 230, 759, 1124
TspGWI ACGGA 2 cut(s) 123, 946
TspRI CASTG 5 cut(s) 213, 619, 881, 914, 1096
Van91I CCANNNNNTGG 1 cut(s) 1295
VneI GTGCAC 1 cut(s) 877
VpaK11BI GGWCC 4 cut(s) 297, 469, 566, 1142
XapI RAATTY 3 cut(s) 341, 964, 1306
XceI RCATGY 3 cut(s) 60, 678, 917
XmiI GTMKAC 1 cut(s) 618
XmnI GAANNNNTTC 2 cut(s) 221, 1193
XspI CTAG 3 cut(s) 107, 263, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.