MD09G1072900.v1.1

COBRA-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
5061318 .. 5063339
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1072900.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGTCTTGGACACCAGATGGTTATGTGGCGGTTGTTACCATGAACAATTTCCAAACGTACCGGCACATCATGAGCCCGGGGTGGACGTTAGGGTGGATGTGGGCTAGAAAAGAAGTGATATGGGCGGCGGTGGGAGCTGAAGCCACGAAACAAGGTGACTGCTCCTGGTTCAAAGGGAACATACCTCATTGTTGCAAGAAAACCCCCACCGTTGTGGACTTGCTTCCTGGTGCTCCTTACAACCAGCAATTCACAAATTGCTGCAAAGGTGGCGTGGTGTCTGCGTGGGGCCAAGACCCATCGACCGCGGTCTCATCCTTCCAGCTCAGTGTTGGATCAGCCGGCACTACAAAACGGACAGTCAGACCTCCTAAGAACTTCACGCTGCTAGGCCCCGGACCAGGGTACACCTGTGGCAGGGCAAGAGTTGTGCCTTCCACAATATTTTTGTCACCTGACCGACGCCGCAGGACTCAAGCTTTGATGACATGGAACGTGACCTGCACATATTCACAACTTCTGGCCAAAAAGTACCCAAGCTGTTGTGTCTCTCTCTCGTCTTTTTACAATTCCACAGTCGTTCCTTGCCCTTCTTGCACTTGTGGTTGCCACGACAAGAGCAATTGCGTCCAAAGTGGTTCCAAAATTGTTAGCACGGTGGAAGATGACGCTACAGAGAAAAGCAATGTGCAGCCGCTACCGCAGTGCACACGCCACATGTGTCCGGTGAGAGTGCACTGGCATGTGATGCTGAATTACAAGGACTATTGGAGCGTGAAGGTGTCGATTACAAACTTCAACTATCGGATGAACTACACGCTTTGGACTCTGGTAATTCAGCATCCTAATTTCATCAACGTCACGCAAGTTTTCAGCTTTGATTACAAGCCTCTCGTTGCTTACGACTCTATAAATGACACTGGCATGTTTTATGGCTTGAAATTCTACAATGACCACTTAATGGAAGCCGGGAAATTTGGGCACGTTCAGTCGGAGATGCTGCTTAAAAAGGACAAGAATACCTTCACTTTGAGGGAGGGGTGGGCATTTCCTCGCAAAGTTTACTTCAATGGCGATGAGGGCCAGTTGCCTCCACCTGATGTCTACCCGTTTCTTCCCAATTCTGCCCATGAAACTCTACTCTCCTTCTCACCGTTGATTTCGTCATTCACTTTCTTGTTCATAGTTATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

399

Amino Acids

44.92

Weight (kDa)

8.97

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 8 - 171 4.4e-65 COBRA-like protein
COB_C PF25079 180 - 370 5.9e-51 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 961
AccI GTMKAC 1 cut(s) 1104
AccII CGCG 1 cut(s) 308
AciI CCGC 8 cut(s) 29, 125, 128, 306, 308, 466, 695, 701
AclWI GGATC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 2 cut(s) 941, 974
AcuI CTGAAG 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 463
AfaI GTAC 3 cut(s) 59, 407, 533
AfiI CCNNNNNNNGG 4 cut(s) 401, 402, 417, 961
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 4 cut(s) 172, 799, 940, 1069
AjnI CCWGG 3 cut(s) 164, 226, 400
AleI CACNNNNGTG 1 cut(s) 212
AluBI AGCT 5 cut(s) 137, 325, 479, 540, 876
AluI AGCT 5 cut(s) 137, 325, 479, 540, 876
Alw21I GWGCWC 3 cut(s) 235, 710, 738
Alw26I GTCTC 2 cut(s) 316, 553
Alw44I GTGCAC 2 cut(s) 706, 734
AlwI GGATC 1 cut(s) 343
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 4 cut(s) 289, 391, 522, 1081
ApaLI GTGCAC 2 cut(s) 706, 734
ApeKI GCWGC 4 cut(s) 261, 385, 691, 1000
ApoI RAATTY 2 cut(s) 941, 974
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
Asp700I GAANNNNTTC 2 cut(s) 47, 1022
AspS9I GGNCC 4 cut(s) 289, 392, 398, 1081
AsuC2I CCSGG 4 cut(s) 77, 78, 396, 970
AsuHPI GGTGA 4 cut(s) 167, 444, 739, 1143
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 398
BaeGI GKGCMC 3 cut(s) 710, 738, 984
BaeI ACNNNNGTAYC 2 cut(s) 397, 430
BalI TGGCCA 1 cut(s) 524
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 3 cut(s) 235, 710, 738
BbvI GCAGC 4 cut(s) 248, 372, 703, 987
BccI CCATC 2 cut(s) 11, 307
BciT130I CCWGG 3 cut(s) 166, 228, 402
BcnI CCSGG 4 cut(s) 77, 78, 396, 970
BcoDI GTCTC 2 cut(s) 316, 553
BfaI CTAG 2 cut(s) 105, 389
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 7 cut(s) 126, 262, 386, 466, 692, 695, 1001
BlsI GCNGC 7 cut(s) 127, 263, 387, 467, 693, 696, 1002
Bme1390I CCNGG 7 cut(s) 77, 78, 166, 228, 396, 402, 970
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 4 cut(s) 289, 392, 398, 1081
BmiI GGNNCC 3 cut(s) 290, 394, 640
BmrFI CCNGG 7 cut(s) 77, 78, 166, 228, 396, 402, 970
BmsI GCATC 3 cut(s) 738, 850, 987
BoxI GACNNNNGTC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 459
BpuMI CCSGG 4 cut(s) 77, 78, 396, 970
BsaHI GRCGYC 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 5 cut(s) 76, 77, 306, 394, 401
BsaWI WCCGGW 1 cut(s) 724
Bsc4I CCNNNNNNNGG 4 cut(s) 401, 402, 417, 961
Bse118I RCCGGY 2 cut(s) 60, 341
Bse1I ACTGG 3 cut(s) 743, 925, 1084
Bse3DI GCAATG 1 cut(s) 691
BseBI CCWGG 3 cut(s) 166, 228, 402
BseDI CCNNGG 5 cut(s) 76, 77, 306, 394, 401
BseGI GGATG 4 cut(s) 102, 314, 813, 841
BseLI CCNNNNNNNGG 4 cut(s) 401, 402, 417, 961
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 3 cut(s) 743, 925, 1084
BseSI GKGCMC 3 cut(s) 710, 738, 984
BseXI GCAGC 4 cut(s) 248, 372, 703, 987
BsgI GTGCAG 2 cut(s) 487, 710
Bsh1236I CGCG 1 cut(s) 308
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 4 cut(s) 291, 393, 524, 1083
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 3 cut(s) 235, 710, 738
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 6 cut(s) 61, 77, 342, 396, 725, 969
BslI CCNNNNNNNGG 4 cut(s) 401, 402, 417, 961
BsmAI GTCTC 2 cut(s) 316, 553
BsnI GGCC 4 cut(s) 291, 393, 524, 1083
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 5 cut(s) 77, 235, 710, 738, 984
Bsp143I GATC 1 cut(s) 335
BspACI CCGC 8 cut(s) 29, 125, 128, 306, 308, 466, 695, 701
BspANI GGCC 4 cut(s) 291, 393, 524, 1083
BspCNI CTCAG 1 cut(s) 339
BspFNI CGCG 1 cut(s) 308
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 3 cut(s) 290, 394, 640
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 691
BsrFI RCCGGY 2 cut(s) 60, 341
BsrI ACTGG 3 cut(s) 743, 925, 1084
BssAI RCCGGY 2 cut(s) 60, 341
BssECI CCNNGG 5 cut(s) 76, 77, 306, 394, 401
BssMI GATC 1 cut(s) 335
BssNI GRCGYC 1 cut(s) 463
Bst2UI CCWGG 3 cut(s) 166, 228, 402
Bst4CI ACNGT 5 cut(s) 211, 361, 577, 658, 1155
BstACI GRCGYC 1 cut(s) 463
BstAPI GCANNNNNTGC 1 cut(s) 748
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 2 cut(s) 326, 372
BstDSI CCRYGG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 415
BstF5I GGATG 4 cut(s) 102, 314, 813, 841
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 1 cut(s) 338
BstMAI GTCTC 2 cut(s) 316, 553
BstMBI GATC 1 cut(s) 335
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 6 cut(s) 134, 270, 594, 700, 748, 1080
BstNI CCWGG 3 cut(s) 166, 228, 402
BstNSI RCATGY 3 cut(s) 721, 746, 928
BstPAI GACNNNNGTC 1 cut(s) 308
BstSCI CCNGG 7 cut(s) 75, 76, 164, 226, 394, 400, 968
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 3 cut(s) 710, 738, 984
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 248, 372, 703, 987
BstXI CCANNNNNNTGG 1 cut(s) 214
BsuRI GGCC 4 cut(s) 291, 393, 524, 1083
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 1089
BtsCI GGATG 4 cut(s) 102, 314, 813, 841
BtsI GCAGTG 1 cut(s) 710
BtsIMutI CAGTG 4 cut(s) 334, 710, 736, 918
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 1 cut(s) 343
CciI TCATGA 1 cut(s) 69
Cfr10I RCCGGY 2 cut(s) 60, 341
Cfr13I GGNCC 4 cut(s) 289, 392, 398, 1081
Cfr42I CCGCGG 1 cut(s) 309
Cfr9I CCCGGG 1 cut(s) 76
CseI GACGC 3 cut(s) 471, 616, 677
Csp6I GTAC 3 cut(s) 58, 406, 532
CviAII CATG 7 cut(s) 40, 70, 489, 718, 743, 925, 1130
CviQI GTAC 3 cut(s) 58, 406, 532
DdeI CTNAG 2 cut(s) 326, 372
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 392
EcoRII CCWGG 3 cut(s) 164, 226, 400
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 7 cut(s) 43, 73, 492, 721, 746, 928, 1133
FalI AAGNNNNNCTT 2 cut(s) 1007, 1039
FatI CATG 7 cut(s) 39, 69, 488, 717, 742, 924, 1129
FblI GTMKAC 1 cut(s) 1104
Fnu4HI GCNGC 7 cut(s) 126, 262, 386, 466, 692, 695, 1001
FokI GGATG 4 cut(s) 109, 301, 820, 828
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 7 cut(s) 126, 262, 386, 466, 692, 695, 1001
FspBI CTAG 2 cut(s) 105, 389
GluI GCNGC 7 cut(s) 126, 262, 386, 466, 692, 695, 1001
HaeIII GGCC 4 cut(s) 291, 393, 524, 1083
HapII CCGG 6 cut(s) 61, 77, 342, 396, 725, 969
HgaI GACGC 3 cut(s) 471, 616, 677
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 7 cut(s) 43, 73, 492, 721, 746, 928, 1133
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 3 cut(s) 472, 826, 905
HpaII CCGG 6 cut(s) 61, 77, 342, 396, 725, 969
HphI GGTGA 4 cut(s) 167, 444, 739, 1143
Hpy166II GTNNAC 7 cut(s) 84, 217, 408, 708, 736, 1063, 1105
Hpy188I TCNGA 3 cut(s) 365, 807, 994
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 7 cut(s) 84, 217, 408, 708, 736, 1063, 1105
Hpy99I CGWCG 1 cut(s) 465
HpyAV CCTTC 6 cut(s) 328, 444, 600, 772, 1033, 1156
HpyCH4III ACNGT 5 cut(s) 211, 361, 577, 658, 1155
HpyCH4IV ACGT 5 cut(s) 56, 86, 495, 858, 984
HpyCH4V TGCA 7 cut(s) 195, 264, 504, 597, 691, 708, 736
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 270, 594, 700, 748, 1080
HpyF3I CTNAG 2 cut(s) 326, 372
HpySE526I ACGT 5 cut(s) 56, 86, 495, 858, 984
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 7 cut(s) 43, 73, 492, 721, 746, 928, 1133
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 1 cut(s) 335
LmnI GCTCC 4 cut(s) 134, 167, 238, 771
Lsp1109I GCAGC 4 cut(s) 248, 372, 703, 987
LweI GCATC 3 cut(s) 738, 850, 987
MaeI CTAG 2 cut(s) 105, 389
MaeII ACGT 5 cut(s) 56, 86, 495, 858, 984
MaeIII GTNAC 5 cut(s) 34, 155, 450, 496, 859
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 2 cut(s) 674, 1106
MfeI CAATTG 1 cut(s) 622
MhlI GDGCHC 5 cut(s) 77, 235, 710, 738, 984
MlsI TGGCCA 1 cut(s) 524
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 3 cut(s) 466, 820, 899
MmeI TCCRAC 2 cut(s) 313, 972
MnlI CCTC 8 cut(s) 195, 378, 900, 1026, 1030, 1062, 1072, 1101
Mox20I TGGCCA 1 cut(s) 524
MroNI GCCGGC 1 cut(s) 341
MroXI GAANNNNTTC 2 cut(s) 47, 1022
MscI TGGCCA 1 cut(s) 524
MseI TTAA 2 cut(s) 959, 1005
MslI CAYNNNNRTG 3 cut(s) 212, 741, 923
Msp20I TGGCCA 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 6 cut(s) 61, 77, 342, 396, 725, 969
MspR9I CCNGG 7 cut(s) 77, 78, 166, 228, 396, 402, 970
MunI CAATTG 1 cut(s) 622
MvaI CCWGG 3 cut(s) 166, 228, 402
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 134, 270, 594, 700, 748, 1080
NaeI GCCGGC 1 cut(s) 343
NciI CCSGG 4 cut(s) 77, 78, 396, 970
NdeII GATC 1 cut(s) 335
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 7 cut(s) 43, 73, 492, 721, 746, 928, 1133
NlaIV GGNNCC 3 cut(s) 290, 394, 640
NmuCI GTSAC 4 cut(s) 155, 450, 496, 859
NspI RCATGY 3 cut(s) 721, 746, 928
OliI CACNNNNGTG 1 cut(s) 212
PagI TCATGA 1 cut(s) 69
PciI ACATGT 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 900
PdiI GCCGGC 1 cut(s) 343
PdmI GAANNNNTTC 2 cut(s) 47, 1022
PflMI CCANNNNNTGG 1 cut(s) 961
PkrI GCNGC 7 cut(s) 127, 263, 387, 467, 693, 696, 1002
PleI GAGTC 3 cut(s) 466, 820, 899
PpsI GAGTC 3 cut(s) 466, 820, 899
PscI ACATGT 1 cut(s) 717
PshAI GACNNNNGTC 1 cut(s) 308
Psp6I CCWGG 3 cut(s) 164, 226, 400
PspGI CCWGG 3 cut(s) 164, 226, 400
PspN4I GGNNCC 3 cut(s) 290, 394, 640
PspPI GGNCC 4 cut(s) 289, 392, 398, 1081
RsaI GTAC 3 cut(s) 59, 407, 533
RsaNI GTAC 3 cut(s) 58, 406, 532
RseI CAYNNNNRTG 3 cut(s) 212, 741, 923
SacII CCGCGG 1 cut(s) 309
SaqAI TTAA 2 cut(s) 959, 1005
SatI GCNGC 7 cut(s) 126, 262, 386, 466, 692, 695, 1001
Sau3AI GATC 1 cut(s) 335
Sau96I GGNCC 4 cut(s) 289, 392, 398, 1081
SchI GAGTC 3 cut(s) 466, 820, 899
ScrFI CCNGG 7 cut(s) 77, 78, 166, 228, 396, 402, 970
SduI GDGCHC 5 cut(s) 77, 235, 710, 738, 984
SfaNI GCATC 3 cut(s) 738, 850, 987
SfcI CTRYAG 1 cut(s) 672
Sfr303I CCGCGG 1 cut(s) 309
SgrBI CCGCGG 1 cut(s) 309
SinI GGWCC 1 cut(s) 398
SmaI CCCGGG 1 cut(s) 78
SmiMI CAYNNNNRTG 3 cut(s) 212, 741, 923
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
SsiI CCGC 8 cut(s) 29, 125, 128, 306, 308, 466, 695, 701
SspI AATATT 1 cut(s) 444
SspMI CTAG 2 cut(s) 105, 389
StyD4I CCNGG 7 cut(s) 75, 76, 164, 226, 394, 400, 968
TaaI ACNGT 5 cut(s) 211, 361, 577, 658, 1155
TaiI ACGT 5 cut(s) 59, 89, 498, 861, 987
TaqI TCGA 2 cut(s) 302, 785
TaqII GACCGA 1 cut(s) 474
TauI GCSGC 3 cut(s) 128, 468, 697
Tru1I TTAA 2 cut(s) 959, 1005
Tru9I TTAA 2 cut(s) 959, 1005
TscAI CASTG 4 cut(s) 334, 710, 743, 925
TseFI GTSAC 4 cut(s) 155, 450, 496, 859
TseI GCWGC 4 cut(s) 261, 385, 691, 1000
Tsp45I GTSAC 4 cut(s) 155, 450, 496, 859
TspDTI ATGAA 5 cut(s) 56, 824, 841, 1146, 1171
TspGWI ACGGA 1 cut(s) 370
TspMI CCCGGG 1 cut(s) 76
TspRI CASTG 4 cut(s) 334, 710, 743, 925
Van91I CCANNNNNTGG 1 cut(s) 961
VneI GTGCAC 2 cut(s) 706, 734
VpaK11BI GGWCC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 415
XapI RAATTY 2 cut(s) 941, 974
XceI RCATGY 3 cut(s) 721, 746, 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XmaI CCCGGG 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 1104
XmnI GAANNNNTTC 2 cut(s) 47, 1022
XspI CTAG 2 cut(s) 105, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.