Prupe.5G207900_v2.0.a1

COBRA-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
16571838 .. 16574272
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G207900.1

Sequence Viewer

Length: 1386 bp
ATGGAATTCAAAAACCAGGCCAACCCAACTCACAAAGTCCACCTTGAGGTGGAAACATGTTGCTCTTGGTCTTGGCTCAAGTTCACATTCTTGGCTGTGCTATGTTGCATGGTATTATCTCCTGCAGCTGCATATGATCCATTGGATCCAACTGGAAACATAACGATCAAATGGGATGTTATGTCCTGGACACCAGATGGCTATGTTGCTGCAGTGACTATGAACAACTTTCAAATGTACCGGCAAATCATTAGCCCCGGCTGGACTCTAGGGTGGTCATGGCAAAAAAAGGAAGTAATCTGGACCATGGTGGGAGCTCAAACCACAGAGCAAGGAGACTGTTCCAAATTCAAAGCAGCCATCCCACATTGTTGTAAGAAAACTCCAACAGTTGTTGACTTGCTTCCTGGAGTTCCTTACAACCAACAGTTTACCAATTGCTGCAAGGGCGGTGTCCTGGCATCTTGGGGACAGGATCCTACAGCTTCAGTCTCTGCCTTCCAGGTGAGTGTCGGGCAAGCTGGTACCTCAAATAAAACAGTGAAACTCCCCAAAAATTTCACCTTGTTTGGTCCAGGACCAGGGTACACTTGTGGCCCTGCAAAGGTCGTGCCATCCACAGTCTTCCTCACGGCTGATCGCAGGCGAAAGACTCAAGCCCTTATGACATGGAATGTGACATGCACCTATTCACAGTTCCTTGCCTCCAAGAATCCAAGCTGTTGTGTTTCGTTTTCATCTTTCTACAATGAAACCATCGTTCCTTGCCCATCTTGTGCTTGTGGTTGTCACAATAAGAAAAACTGTATCAAGAGTGATTCAAAGTTAGCACACAAGACAGGAATAAACACACCAAAAAAGGACAATACACCGTTGCTTCAGTGCACACATCATATGTGCCCTATCCGAGTTCACTGGCATGTGAAGCTTAACTATAAGGCATATTGGCGCGTCAAGATTTCCATCACAAATTTCAATTATCGGATGAACTACACGGAGTGGACACTCGTTGCGCAGCATCCTAATCTCAACAATGTCACTCAAGTCTTTAGCTTTGGTTACAAACCCCTTCTCCCCTATGAGTCCATTAATGACACTGGCATGTTCTATGGCATGAAGTTTTACAATGACTTATTAATGGAAGCTGGGCCATCAGGAAATGTTCAGTCTGAGGTGCTTCTGCAGAAGGACCAGAACACCTTTACATTCAAGCAAGGATGGGCCTTTCCTCGAAGAGTTTATTTCAACGGTGATGAATGTATGCTGCCCCCACCTGATGCATACCCAGCACTACCAAACTCTGCCCATGTAAATTCTATTTCAATCTTCAAAATGGCAGCTTCTGTACTTCTGATATTGTTTTCTATATGTTTTTCACTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

462

Amino Acids

51.66

Weight (kDa)

8.93

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1014
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AccII CGCG 1 cut(s) 951
AciI CCGC 1 cut(s) 450
AclWI GGATC 5 cut(s) 131, 140, 153, 470, 483
AcsI RAATTY 5 cut(s) 5, 347, 556, 970, 1312
AcuI CTGAAG 2 cut(s) 471, 863
AdeI CACNNNGTG 1 cut(s) 999
AfaI GTAC 4 cut(s) 239, 526, 587, 1347
AfiI CCNNNNNNNGG 4 cut(s) 46, 49, 581, 604
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 9 cut(s) 10, 233, 352, 822, 976, 1210, 1246, 1323, 1330
AjnI CCWGG 7 cut(s) 15, 185, 406, 456, 501, 574, 580
AluBI AGCT 9 cut(s) 128, 317, 485, 521, 720, 928, 1053, 1145, 1340
AluI AGCT 9 cut(s) 128, 317, 485, 521, 720, 928, 1053, 1145, 1340
Alw21I GWGCWC 2 cut(s) 319, 887
Alw26I GTCTC 2 cut(s) 330, 496
Alw44I GTGCAC 1 cut(s) 883
AlwI GGATC 5 cut(s) 131, 140, 153, 470, 483
AlwNI CAGNNNCTG 2 cut(s) 494, 1343
AoxI GGCC 4 cut(s) 18, 595, 1148, 1221
ApaLI GTGCAC 1 cut(s) 883
ApeKI GCWGC 8 cut(s) 125, 128, 209, 356, 441, 1015, 1264, 1337
ApoI RAATTY 5 cut(s) 5, 347, 556, 970, 1312
AseI ATTAAT 2 cut(s) 1089, 1136
Asp718I GGTACC 1 cut(s) 524
AspLEI GCGC 2 cut(s) 951, 1015
AspS9I GGNCC 7 cut(s) 303, 572, 578, 596, 1148, 1189, 1221
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 517, 553, 1262
AvaII GGWCC 4 cut(s) 303, 572, 578, 1189
BaeGI GKGCMC 2 cut(s) 887, 902
BaeI ACNNNNGTAYC 2 cut(s) 577, 610
BamHI GGATCC 2 cut(s) 145, 475
BanI GGYRCC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 616
Bbv12I GWGCWC 2 cut(s) 319, 887
BbvI GCAGC 8 cut(s) 115, 137, 196, 368, 428, 1027, 1251, 1349
BccI CCATC 8 cut(s) 191, 368, 622, 764, 778, 971, 1159, 1212
BceAI ACGGC 1 cut(s) 648
BciT130I CCWGG 7 cut(s) 17, 187, 408, 458, 503, 576, 582
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 330, 496
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 4 cut(s) 123, 210, 480, 1181
BisI GCNGC 8 cut(s) 126, 129, 210, 357, 442, 1016, 1265, 1338
BlsI GCNGC 8 cut(s) 127, 130, 211, 358, 443, 1017, 1266, 1339
Bme1390I CCNGG 8 cut(s) 17, 187, 258, 408, 458, 503, 576, 582
Bme18I GGWCC 4 cut(s) 303, 572, 578, 1189
BmgT120I GGNCC 7 cut(s) 303, 572, 578, 596, 1148, 1189, 1221
BmiI GGNNCC 3 cut(s) 147, 477, 526
BmrFI CCNGG 8 cut(s) 17, 187, 258, 408, 458, 503, 576, 582
BmsI GCATC 3 cut(s) 470, 1027, 1267
BpiI GAAGAC 1 cut(s) 616
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 4 cut(s) 62, 65, 639, 1026
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 962
BsaJI CCNNGG 3 cut(s) 256, 306, 581
BsaXI ACNNNNNCTCC 2 cut(s) 1056, 1086
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 49, 581, 604
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 3 cut(s) 157, 920, 1102
Bse8I GATNNNNATC 1 cut(s) 962
BseBI CCWGG 7 cut(s) 17, 187, 408, 458, 503, 576, 582
BseDI CCNNGG 3 cut(s) 256, 306, 581
BseGI GGATG 6 cut(s) 181, 360, 614, 990, 1018, 1223
BseJI GATNNNNATC 1 cut(s) 962
BseLI CCNNNNNNNGG 4 cut(s) 46, 49, 581, 604
BseMII CTCAG 1 cut(s) 1161
BseNI ACTGG 3 cut(s) 157, 920, 1102
BseSI GKGCMC 2 cut(s) 887, 902
BseXI GCAGC 8 cut(s) 115, 137, 196, 368, 428, 1027, 1251, 1349
BseYI CCCAGC 2 cut(s) 1145, 1285
Bsh1236I CGCG 1 cut(s) 951
BshFI GGCC 4 cut(s) 20, 597, 1150, 1223
BshNI GGYRCC 1 cut(s) 524
BsiHKAI GWGCWC 2 cut(s) 319, 887
BsiSI CCGG 2 cut(s) 241, 258
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 4 cut(s) 46, 49, 581, 604
BsmAI GTCTC 2 cut(s) 330, 496
BsmFI GGGAC 1 cut(s) 483
BsnI GGCC 4 cut(s) 20, 597, 1150, 1223
Bsp1286I GDGCHC 3 cut(s) 319, 887, 902
Bsp143I GATC 5 cut(s) 136, 145, 165, 475, 637
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 450
BspANI GGCC 4 cut(s) 20, 597, 1150, 1223
BspCNI CTCAG 1 cut(s) 1162
BspFNI CGCG 1 cut(s) 951
BspLI GGNNCC 3 cut(s) 147, 477, 526
BspMAI CTGCAG 3 cut(s) 127, 214, 1185
BspPI GGATC 5 cut(s) 131, 140, 153, 470, 483
BspT107I GGYRCC 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 3 cut(s) 157, 920, 1102
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 256, 306, 581
BssMI GATC 5 cut(s) 136, 145, 165, 475, 637
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 7 cut(s) 17, 187, 408, 458, 503, 576, 582
Bst4CI ACNGT 9 cut(s) 341, 391, 429, 541, 622, 696, 806, 873, 1250
Bst6I CTCTTC 1 cut(s) 1228
BstC8I GCNNGC 2 cut(s) 519, 644
BstDEI CTNAG 1 cut(s) 1170
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 6 cut(s) 181, 360, 614, 990, 1018, 1223
BstFNI CGCG 1 cut(s) 951
BstHHI GCGC 2 cut(s) 951, 1015
BstKTI GATC 5 cut(s) 139, 148, 168, 478, 640
BstMAI GTCTC 2 cut(s) 330, 496
BstMBI GATC 5 cut(s) 136, 145, 165, 475, 637
BstMWI GCNNNNNNNGC 3 cut(s) 447, 925, 1286
BstNI CCWGG 7 cut(s) 17, 187, 408, 458, 503, 576, 582
BstNSI RCATGY 4 cut(s) 60, 684, 923, 1105
BstSCI CCNGG 8 cut(s) 15, 185, 256, 406, 456, 501, 574, 580
BstSFI CTRYAG 4 cut(s) 123, 210, 480, 1181
BstSLI GKGCMC 2 cut(s) 887, 902
BstUI CGCG 1 cut(s) 951
BstV1I GCAGC 8 cut(s) 115, 137, 196, 368, 428, 1027, 1251, 1349
BstV2I GAAGAC 1 cut(s) 616
BstX2I RGATCY 2 cut(s) 145, 475
BstYI RGATCY 2 cut(s) 145, 475
BsuRI GGCC 4 cut(s) 20, 597, 1150, 1223
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 6 cut(s) 181, 360, 614, 990, 1018, 1223
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 5 cut(s) 219, 546, 887, 913, 1095
Cac8I GCNNGC 2 cut(s) 519, 644
CaiI CAGNNNCTG 2 cut(s) 494, 1343
CfoI GCGC 2 cut(s) 951, 1015
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 7 cut(s) 303, 572, 578, 596, 1148, 1189, 1221
CseI GACGC 1 cut(s) 940
Csp6I GTAC 4 cut(s) 238, 525, 586, 1346
CviQI GTAC 4 cut(s) 238, 525, 586, 1346
DdeI CTNAG 1 cut(s) 1170
DpnI GATC 5 cut(s) 138, 147, 167, 477, 639
DpnII GATC 5 cut(s) 136, 145, 165, 475, 637
DraIII CACNNNGTG 1 cut(s) 999
Eam1104I CTCTTC 1 cut(s) 1228
EarI CTCTTC 1 cut(s) 1228
Ecl136II GAGCTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 319
Eco47I GGWCC 4 cut(s) 303, 572, 578, 1189
Eco53kI GAGCTC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 471, 863
EcoICRI GAGCTC 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 7 cut(s) 15, 185, 406, 456, 501, 574, 580
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 1282
EcoT38I GRGCYC 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 306
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 483
FauNDI CATATG 2 cut(s) 133, 894
Fnu4HI GCNGC 8 cut(s) 126, 129, 210, 357, 442, 1016, 1265, 1338
FokI GGATG 6 cut(s) 188, 347, 601, 997, 1005, 1230
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 8 cut(s) 126, 129, 210, 357, 442, 1016, 1265, 1338
FspBI CTAG 1 cut(s) 269
FspI TGCGCA 1 cut(s) 1014
GlaI GCGC 2 cut(s) 950, 1014
GluI GCNGC 8 cut(s) 126, 129, 210, 357, 442, 1016, 1265, 1338
GsaI CCCAGC 2 cut(s) 1149, 1289
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 4 cut(s) 20, 597, 1150, 1223
HapII CCGG 2 cut(s) 241, 258
HgaI GACGC 1 cut(s) 940
HhaI GCGC 2 cut(s) 951, 1015
Hin6I GCGC 2 cut(s) 949, 1013
HinP1I GCGC 2 cut(s) 949, 1013
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 5 cut(s) 265, 652, 712, 818, 1082
HpaII CCGG 2 cut(s) 241, 258
HphI GGTGA 3 cut(s) 517, 553, 1262
Hpy166II GTNNAC 8 cut(s) 40, 84, 397, 432, 588, 885, 913, 1002
Hpy188I TCNGA 4 cut(s) 908, 984, 1171, 1353
Hpy188III TCNNGA 5 cut(s) 301, 811, 955, 1155, 1383
Hpy8I GTNNAC 8 cut(s) 40, 84, 397, 432, 588, 885, 913, 1002
HpyAV CCTTC 3 cut(s) 508, 1079, 1180
HpyCH4III ACNGT 9 cut(s) 341, 391, 429, 541, 622, 696, 806, 873, 1250
HpyF10VI GCNNNNNNNGC 3 cut(s) 447, 925, 1286
HpyF3I CTNAG 1 cut(s) 1170
HspAI GCGC 2 cut(s) 949, 1013
KpnI GGTACC 1 cut(s) 528
Kzo9I GATC 5 cut(s) 136, 145, 165, 475, 637
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 8 cut(s) 115, 137, 196, 368, 428, 1027, 1251, 1349
LweI GCATC 3 cut(s) 470, 1027, 1267
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 5 cut(s) 214, 676, 788, 1036, 1058
MalI GATC 5 cut(s) 138, 147, 167, 477, 639
MboI GATC 5 cut(s) 136, 145, 165, 475, 637
MboII GAAGA 3 cut(s) 616, 1245, 1318
MfeI CAATTG 1 cut(s) 436
MflI RGATCY 2 cut(s) 145, 475
MhlI GDGCHC 3 cut(s) 319, 887, 902
MluCI AATT 7 cut(s) 5, 347, 436, 556, 970, 976, 1312
MlyI GAGTC 3 cut(s) 259, 646, 1091
MmeI TCCRAC 2 cut(s) 173, 410
MnlI CCTC 6 cut(s) 40, 538, 638, 715, 1165, 1239
Mph1103I ATGCAT 1 cut(s) 1282
MseI TTAA 3 cut(s) 930, 1089, 1136
MslI CAYNNNNRTG 2 cut(s) 918, 1100
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 2 cut(s) 241, 258
MspR9I CCNGG 8 cut(s) 17, 187, 258, 408, 458, 503, 576, 582
MunI CAATTG 1 cut(s) 436
MvaI CCWGG 7 cut(s) 17, 187, 408, 458, 503, 576, 582
MvnI CGCG 1 cut(s) 951
MwoI GCNNNNNNNGC 3 cut(s) 447, 925, 1286
NciI CCSGG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 2 cut(s) 133, 894
NdeII GATC 5 cut(s) 136, 145, 165, 475, 637
NlaIV GGNNCC 3 cut(s) 147, 477, 526
NmuCI GTSAC 4 cut(s) 214, 676, 788, 1036
NsbI TGCGCA 1 cut(s) 1014
NsiI ATGCAT 1 cut(s) 1282
NspI RCATGY 4 cut(s) 60, 684, 923, 1105
PciI ACATGT 1 cut(s) 56
PfeI GAWTC 2 cut(s) 712, 818
PfoI TCCNGGA 3 cut(s) 185, 406, 574
PkrI GCNGC 8 cut(s) 127, 130, 211, 358, 443, 1017, 1266, 1339
PleI GAGTC 3 cut(s) 259, 646, 1090
PpsI GAGTC 3 cut(s) 259, 646, 1090
PscI ACATGT 1 cut(s) 56
PshBI ATTAAT 2 cut(s) 1089, 1136
Psp124BI GAGCTC 1 cut(s) 319
Psp6I CCWGG 7 cut(s) 15, 185, 406, 456, 501, 574, 580
PspFI CCCAGC 2 cut(s) 1145, 1285
PspGI CCWGG 7 cut(s) 15, 185, 406, 456, 501, 574, 580
PspN4I GGNNCC 3 cut(s) 147, 477, 526
PspPI GGNCC 7 cut(s) 303, 572, 578, 596, 1148, 1189, 1221
PstI CTGCAG 3 cut(s) 127, 214, 1185
PstNI CAGNNNCTG 2 cut(s) 494, 1343
PsuI RGATCY 2 cut(s) 145, 475
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 4 cut(s) 239, 526, 587, 1347
RsaNI GTAC 4 cut(s) 238, 525, 586, 1346
RseI CAYNNNNRTG 2 cut(s) 918, 1100
SacI GAGCTC 1 cut(s) 319
SaqAI TTAA 3 cut(s) 930, 1089, 1136
SatI GCNGC 8 cut(s) 126, 129, 210, 357, 442, 1016, 1265, 1338
Sau3AI GATC 5 cut(s) 136, 145, 165, 475, 637
Sau96I GGNCC 7 cut(s) 303, 572, 578, 596, 1148, 1189, 1221
SchI GAGTC 3 cut(s) 259, 646, 1091
ScrFI CCNGG 8 cut(s) 17, 187, 258, 408, 458, 503, 576, 582
SduI GDGCHC 3 cut(s) 319, 887, 902
SfaNI GCATC 3 cut(s) 470, 1027, 1267
SfcI CTRYAG 4 cut(s) 123, 210, 480, 1181
SinI GGWCC 4 cut(s) 303, 572, 578, 1189
SmiMI CAYNNNNRTG 2 cut(s) 918, 1100
SmlI CTYRAG 4 cut(s) 44, 77, 654, 1041
SmoI CTYRAG 4 cut(s) 44, 77, 654, 1041
Sse9I AATT 7 cut(s) 5, 347, 436, 556, 970, 976, 1312
SsiI CCGC 1 cut(s) 450
SspMI CTAG 1 cut(s) 269
SstI GAGCTC 1 cut(s) 319
StyD4I CCNGG 8 cut(s) 15, 185, 256, 406, 456, 501, 574, 580
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 9 cut(s) 341, 391, 429, 541, 622, 696, 806, 873, 1250
TaqI TCGA 1 cut(s) 1231
TasI AATT 7 cut(s) 5, 347, 436, 556, 970, 976, 1312
TatI WGTACW 1 cut(s) 1345
TfiI GAWTC 2 cut(s) 712, 818
Tru1I TTAA 3 cut(s) 930, 1089, 1136
Tru9I TTAA 3 cut(s) 930, 1089, 1136
TscAI CASTG 5 cut(s) 219, 546, 887, 920, 1102
TseFI GTSAC 4 cut(s) 214, 676, 788, 1036
TseI GCWGC 8 cut(s) 125, 128, 209, 356, 441, 1015, 1264, 1337
Tsp45I GTSAC 4 cut(s) 214, 676, 788, 1036
TspDTI ATGAA 6 cut(s) 236, 726, 765, 1001, 1130, 1269
TspGWI ACGGA 1 cut(s) 1010
TspRI CASTG 5 cut(s) 219, 546, 887, 920, 1102
VneI GTGCAC 1 cut(s) 883
VpaK11BI GGWCC 4 cut(s) 303, 572, 578, 1189
VspI ATTAAT 2 cut(s) 1089, 1136
XapI RAATTY 5 cut(s) 5, 347, 556, 970, 1312
XceI RCATGY 4 cut(s) 60, 684, 923, 1105
XspI CTAG 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.