Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002884

Physical Location & Seq

Genomic Coordinates Reverse (-)

74044734 .. 74048493

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG562200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTGCTACAGAACATTACTTTGTATTTTACAGGCAACTGTAACCATAAACAACTTCCAAATGTATCGGCACATAATGAGCCCTGGGTGGACATTAGGTTGGACATGGGCTAAAAAAGAAGTGATATGGTCCGCGGTGGGAGCACAAACCACCGAGCAAGGTGACTGCTCCAAGTTCAAAGGGAACATACCTCATTGTTGCAAGAAAACCCCCACAGTTGTGGACTTGCTTCCCGGCGTGCCTTACAACCAGCAATACCAAAACTGTTGCAAAGGCGGAGTAGTGGGTGCTTGGGGCCAAGATCCTTCAGCTTCTGTCTCGGCCTTCCAGCTGAGTGTTGGAATGGCCGGTACTTCAAACAAAACTGTGAAACTCCCCAGGAACTTCACTCTGCTAGGACCTGGTCCAGGGTACACTTGTGGCAAGGCTAAAGTTGTGCCTCCCACCGTCTTTTTGTCACCTGATCGTCGTCGTAAGACTTTAGCTCTCATGACTTGGAATGTGACTTGTACTTATTCACAGCTTCTGGCCCGTAAAAACCCAAGTTGTTGTGTATCACTCTCGTCTTTCTACAACGAAACAATTGTTCCCTGCCCATCTTGTTCTTGTGGTTGCCATAACAAGGACAGTTGTGTCAAAAGCAACTCGAAAATTCTGAGCATGGTGGGAGTTAACACCCCAAAGAAAGACAATGCCCCTTTATTGCAATGCACACACCACATGTGCCCGGTAAGGATTCACTGGCATGTGAAAGTGAATTACAAGGAGTACTGGCGTGTGAAGGTTTCGGTTACAAACTTTAACTATCGGATGAACTACACACTCTGGACTCTGGTCATTCAGCACCCTAATCTCAACAATGTCACACAAGTTTTCAGCTTTGACTACAAGCCTCTTGTTCCTTATGAGTCCATAAATGACACTGGTATGTTCTATGGATTGAAATACTTCAATGACCAATTAATGGAAGCCGGGCCATTTGGGAACGTTCAGTCGGAAATTCTTCTTAAGAAGGACATAAACACATTTACTTTCAAGGAGGGGTGGGCATTTCCTCGAAAAGTTTACTTCAATGGTGATGAGTGCCAGATGCCCCCACCTGATACATACCCATTTCTGCCTAATTCTGCCCATCAAAATCTACTTTCATTCTCAGCATTGGTTTCCACATTAATTTTCTTGTTGATAGCTATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

399

Amino Acids

44.95

Weight (kDa)

9.12

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	11 - 173	2.1e-65	COBRA-like protein
COB_C	PF25079	182 - 371	6.2e-54	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15630 AT5G15630 AT5G15630 AT5G15630 AT5G15630
fragaria_vesca	FvH4_5g13560 FvH4_6g46470 FvH4_6g46470
malus_domestica	MD06G1203800.v1.1 MD09G1072900.v1.1 MD14G1214900.v1.1 MD17G1064300.v1.1
prunus_persica	Prupe.3G250300_v2.0.a1 Prupe.5G207900_v2.0.a1 Prupe.5G207900_v2.0.a1
pyrus_communis	pycom06g18200 pycom17g06440
rosa_chinensis	RchiOBHm_Chr2g0165021 RchiOBHm_Chr7g0183391
rosa_laevigata	RLG00000005050 RLG00000021507
rosa_multiflora	Rmu_sc0000951.1_g000011
rosa_roxburghii	Rroxscaffold_2G00086110 Rroxscaffold_3G00270480
rosa_rugosa	Rorug02G0512400 Rorug02G0512400 Rorug06G0457600 Rorug06G0457700
rosa_samantha	Rh2AG580400 Rh2BG591700 Rh2CG562200 Rh2DG601800 Rh7AG058800 Rh7BG058800 Rh7CG060400 Rh7DG058500
rosa_wichuraiana	Rw2G048180 Rw7G004840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	632
AccB7I	CCANNNNNTGG	1 cut(s)	964
AccII	CGCG	1 cut(s)	134
AciI	CCGC	3 cut(s)	132, 134, 276
AclI	AACGTT	1 cut(s)	987
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	651, 999
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	4 cut(s)	352, 413, 511, 770
AfiI	CCNNNNNNNGG	3 cut(s)	407, 622, 964
AflII	CTTAAG	1 cut(s)	1007
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	6 cut(s)	178, 357, 943, 952, 1036, 1072
AjnI	CCWGG	4 cut(s)	82, 377, 400, 406
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	311, 331, 485, 523, 879, 1190
AluI	AGCT	6 cut(s)	311, 331, 485, 523, 879, 1190
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	296
AlwNI	CAGNNNCTG	2 cut(s)	314, 526
AoxI	GGCC	5 cut(s)	295, 321, 345, 528, 974
ApoI	RAATTY	2 cut(s)	651, 999
AseI	ATTAAT	2 cut(s)	962, 1172
Asp700I	GAANNNNTTC	2 cut(s)	947, 1002
AspS9I	GGNCC	6 cut(s)	129, 295, 398, 404, 529, 974
AsuC2I	CCSGG	3 cut(s)	234, 728, 973
AsuHPI	GGTGA	3 cut(s)	173, 450, 1088
AvaII	GGWCC	3 cut(s)	129, 398, 404
BaeGI	GKGCMC	1 cut(s)	728
BaeI	ACNNNNGTAYC	2 cut(s)	403, 436
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	145
BccI	CCATC	2 cut(s)	604, 1140
BciT130I	CCWGG	4 cut(s)	84, 379, 402, 408
BcnI	CCSGG	3 cut(s)	234, 728, 973
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	7
BfrI	CTTAAG	1 cut(s)	1007
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	7 cut(s)	84, 234, 379, 402, 408, 728, 973
Bme18I	GGWCC	3 cut(s)	129, 398, 404
BmgT120I	GGNCC	6 cut(s)	129, 295, 398, 404, 529, 974
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	7 cut(s)	84, 234, 379, 402, 408, 728, 973
BmsI	GCATC	1 cut(s)	1080
BoxI	GACNNNNGTC	1 cut(s)	833
BpuMI	CCSGG	3 cut(s)	234, 728, 973
BsaJI	CCNNGG	5 cut(s)	82, 83, 132, 377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 622, 964
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	3 cut(s)	746, 776, 928
Bse3DI	GCAATG	1 cut(s)	713
BseBI	CCWGG	4 cut(s)	84, 379, 402, 408
BseDI	CCNNGG	5 cut(s)	82, 83, 132, 377, 407
BseGI	GGATG	1 cut(s)	816
BseLI	CCNNNNNNNGG	3 cut(s)	407, 622, 964
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	3 cut(s)	323, 647, 1167
BseNI	ACTGG	3 cut(s)	746, 776, 928
BseSI	GKGCMC	1 cut(s)	728
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	5 cut(s)	297, 323, 347, 530, 976
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	4 cut(s)	234, 348, 728, 972
BslI	CCNNNNNNNGG	3 cut(s)	407, 622, 964
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	5 cut(s)	297, 323, 347, 530, 976
Bsp1286I	GDGCHC	3 cut(s)	83, 145, 728
Bsp143I	GATC	2 cut(s)	301, 463
BspACI	CCGC	3 cut(s)	132, 134, 276
BspANI	GGCC	5 cut(s)	297, 323, 347, 530, 976
BspCNI	CTCAG	3 cut(s)	324, 648, 1166
BspFNI	CGCG	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	296
BspTI	CTTAAG	1 cut(s)	1007
BsrDI	GCAATG	1 cut(s)	713
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	746, 776, 928
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	5 cut(s)	82, 83, 132, 377, 407
BssMI	GATC	2 cut(s)	301, 463
Bst2UI	CCWGG	4 cut(s)	84, 379, 402, 408
Bst4CI	ACNGT	6 cut(s)	40, 217, 266, 367, 448, 629
BstAFI	CTTAAG	1 cut(s)	1007
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	332, 656, 1153
BstDSI	CCRYGG	1 cut(s)	132
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	816
BstFNI	CGCG	1 cut(s)	134
BstKTI	GATC	2 cut(s)	304, 466
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	2 cut(s)	301, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	4 cut(s)	84, 379, 402, 408
BstNSI	RCATGY	2 cut(s)	724, 749
BstPAI	GACNNNNGTC	1 cut(s)	833
BstSCI	CCNGG	7 cut(s)	82, 232, 377, 400, 406, 726, 971
BstSFI	CTRYAG	1 cut(s)	7
BstSLI	GKGCMC	1 cut(s)	728
BstUI	CGCG	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	5 cut(s)	297, 323, 347, 530, 976
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	816
BtsIMutI	CAGTG	2 cut(s)	739, 921
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	2 cut(s)	314, 526
CciI	TCATGA	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	6 cut(s)	129, 295, 398, 404, 529, 974
Cfr42I	CCGCGG	1 cut(s)	135
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	4 cut(s)	351, 412, 510, 769
CviAII	CATG	5 cut(s)	105, 490, 661, 721, 746
CviQI	GTAC	4 cut(s)	351, 412, 510, 769
DdeI	CTNAG	3 cut(s)	332, 656, 1153
DpnI	GATC	2 cut(s)	303, 465
DpnII	GATC	2 cut(s)	301, 463
DrdI	GACNNNNNNGTC	1 cut(s)	632
DseDI	GACNNNNNNGTC	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	83
Eco47I	GGWCC	3 cut(s)	129, 398, 404
Eco57I	CTGAAG	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRII	CCWGG	4 cut(s)	82, 377, 400, 406
EcoT38I	GRGCYC	1 cut(s)	83
FaeI	CATG	5 cut(s)	108, 493, 664, 724, 749
FatI	CATG	5 cut(s)	104, 489, 660, 720, 745
FokI	GGATG	1 cut(s)	823
FriOI	GRGCYC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	395
HaeIII	GGCC	5 cut(s)	297, 323, 347, 530, 976
HapII	CCGG	4 cut(s)	234, 348, 728, 972
Hin1II	CATG	5 cut(s)	108, 493, 664, 724, 749
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	3 cut(s)	736, 829, 908
HpaI	GTTAAC	1 cut(s)	673
HpaII	CCGG	4 cut(s)	234, 348, 728, 972
HphI	GGTGA	3 cut(s)	173, 450, 1088
Hpy166II	GTNNAC	5 cut(s)	90, 223, 414, 673, 1066
Hpy188I	TCNGA	3 cut(s)	657, 810, 997
Hpy188III	TCNNGA	2 cut(s)	490, 826
Hpy8I	GTNNAC	5 cut(s)	90, 223, 414, 673, 1066
Hpy99I	CGWCG	2 cut(s)	471, 474
HpyAV	CCTTC	4 cut(s)	315, 334, 775, 1006
HpyCH4III	ACNGT	6 cut(s)	40, 217, 266, 367, 448, 629
HpyCH4IV	ACGT	1 cut(s)	987
HpyCH4V	TGCA	4 cut(s)	201, 270, 706, 711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	3 cut(s)	332, 656, 1153
HpySE526I	ACGT	1 cut(s)	987
Hsp92II	CATG	5 cut(s)	108, 493, 664, 724, 749
KspAI	GTTAAC	1 cut(s)	673
KspI	CCGCGG	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	301, 463
LmnI	GCTCC	2 cut(s)	140, 173
LweI	GCATC	1 cut(s)	1080
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	987
MaeIII	GTNAC	6 cut(s)	40, 161, 456, 502, 790, 862
MalI	GATC	2 cut(s)	303, 465
MboI	GATC	2 cut(s)	301, 463
MboII	GAAGA	1 cut(s)	995
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	3 cut(s)	83, 145, 728
MluCI	AATT	7 cut(s)	582, 651, 757, 959, 999, 1123, 1173
MlyI	GAGTC	2 cut(s)	823, 917
MmeI	TCCRAC	3 cut(s)	80, 319, 975
MnlI	CCTC	5 cut(s)	201, 450, 903, 1033, 1065
MroXI	GAANNNNTTC	2 cut(s)	947, 1002
MseI	TTAA	5 cut(s)	672, 801, 962, 1008, 1172
MslI	CAYNNNNRTG	3 cut(s)	218, 744, 926
MspA1I	CMGCKG	2 cut(s)	134, 331
MspCI	CTTAAG	1 cut(s)	1007
MspI	CCGG	4 cut(s)	234, 348, 728, 972
MspR9I	CCNGG	7 cut(s)	84, 234, 379, 402, 408, 728, 973
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	4 cut(s)	84, 379, 402, 408
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	3 cut(s)	234, 728, 973
NdeII	GATC	2 cut(s)	301, 463
NlaIII	CATG	5 cut(s)	108, 493, 664, 724, 749
NlaIV	GGNNCC	1 cut(s)	296
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	4 cut(s)	161, 456, 502, 862
NspI	RCATGY	2 cut(s)	724, 749
OliI	CACNNNNGTG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	489
PasI	CCCWGGG	1 cut(s)	83
PciI	ACATGT	1 cut(s)	720
PdmI	GAANNNNTTC	2 cut(s)	947, 1002
PfeI	GAWTC	1 cut(s)	736
PflFI	GACNNNGTC	1 cut(s)	402
PflMI	CCANNNNNTGG	1 cut(s)	964
PleI	GAGTC	2 cut(s)	823, 916
PpsI	GAGTC	2 cut(s)	823, 916
PpuMI	RGGWCCY	1 cut(s)	398
PscI	ACATGT	1 cut(s)	720
PshAI	GACNNNNGTC	1 cut(s)	833
PshBI	ATTAAT	2 cut(s)	962, 1172
Psp1406I	AACGTT	1 cut(s)	987
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	4 cut(s)	82, 377, 400, 406
PspGI	CCWGG	4 cut(s)	82, 377, 400, 406
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	6 cut(s)	129, 295, 398, 404, 529, 974
PspPPI	RGGWCCY	1 cut(s)	398
PstNI	CAGNNNCTG	2 cut(s)	314, 526
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	402
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	4 cut(s)	352, 413, 511, 770
RsaNI	GTAC	4 cut(s)	351, 412, 510, 769
RseI	CAYNNNNRTG	3 cut(s)	218, 744, 926
SacII	CCGCGG	1 cut(s)	135
SaqAI	TTAA	5 cut(s)	672, 801, 962, 1008, 1172
Sau3AI	GATC	2 cut(s)	301, 463
Sau96I	GGNCC	6 cut(s)	129, 295, 398, 404, 529, 974
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	2 cut(s)	823, 917
ScrFI	CCNGG	7 cut(s)	84, 234, 379, 402, 408, 728, 973
SduI	GDGCHC	3 cut(s)	83, 145, 728
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	1080
SfcI	CTRYAG	1 cut(s)	7
Sfr303I	CCGCGG	1 cut(s)	135
SgrBI	CCGCGG	1 cut(s)	135
SinI	GGWCC	3 cut(s)	129, 398, 404
SmiMI	CAYNNNNRTG	3 cut(s)	218, 744, 926
SmlI	CTYRAG	1 cut(s)	1007
SmoI	CTYRAG	1 cut(s)	1007
Sse9I	AATT	7 cut(s)	582, 651, 757, 959, 999, 1123, 1173
SsiI	CCGC	3 cut(s)	132, 134, 276
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	7 cut(s)	82, 232, 377, 400, 406, 726, 971
TaaI	ACNGT	6 cut(s)	40, 217, 266, 367, 448, 629
TaiI	ACGT	1 cut(s)	990
TaqI	TCGA	2 cut(s)	647, 1057
TasI	AATT	7 cut(s)	582, 651, 757, 959, 999, 1123, 1173
TatI	WGTACW	2 cut(s)	509, 768
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	5 cut(s)	672, 801, 962, 1008, 1172
Tru9I	TTAA	5 cut(s)	672, 801, 962, 1008, 1172
TscAI	CASTG	2 cut(s)	746, 928
TseFI	GTSAC	4 cut(s)	161, 456, 502, 862
Tsp45I	GTSAC	4 cut(s)	161, 456, 502, 862
TspDTI	ATGAA	2 cut(s)	827, 1137
TspRI	CASTG	2 cut(s)	746, 928
Tth111I	GACNNNGTC	1 cut(s)	402
Van91I	CCANNNNNTGG	1 cut(s)	964
Vha464I	CTTAAG	1 cut(s)	1007
VpaK11BI	GGWCC	3 cut(s)	129, 398, 404
VspI	ATTAAT	2 cut(s)	962, 1172
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	2 cut(s)	651, 999
XceI	RCATGY	2 cut(s)	724, 749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmnI	GAANNNNTTC	2 cut(s)	947, 1002
XspI	CTAG	1 cut(s)	395
ZrmI	AGTACT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.