FvH4_5g13560

COBRA-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
7671641 .. 7673764
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13560.t1

Sequence Viewer

Length: 1368 bp
ATGGAACTCCATAACCAGGCTGATCCAGCTCACAGAATCCATCTTGAGGTGGTAACATGTTGTTCTTGGCTGAAGATCACATTCTTGGCCATGTTATTTTGTGTGCTAGTATCACCTACAGCGGCATATGACCCGTTGGATCCAACCGGAAACATAACGATCAAATGGGATGTCATGTCTTGGACACCAGATGGTTATGTTGCTGCAGTCACCATGAACAACTTCCAAATGTACCGGCAAATCGCGAACCCCGGCTGGACACTAGGATGGACATGGGCGAAGAAAGAAGTAATCTGGACCATGGTGGGAGCTCAGACGACAGAGCAAGGAGACTGTTCCAAATTCAAAGGAAACACGCCACATTGTTGCAAGAAAACTCCAACAGTTGTTGACTTGCTACCCGGAGTTCCTTTCAACCAACAGTTCAGCAACTGCTGCAAAGGTGGTGTCATGGCATCTTGGGGACAGGACCCTTCAGCTTCAGTGTCGGCCTTCCAGGTGAGCGTCGGGCAAGGCGGAACTTCAAATAAAACAGTCAAGCTTCCCAAGAACTTCACCTTGCTTGGTCCGGGACCAGGGTACACTTGCGGCCCTGCAAAGGTTGTGCCATCCACTGTCTTCCTCACAGCTGATCGTAGGCGAAAGACTCAAGCACTTATGACATGGAATGTGACATGTACCTATTCACAGTTACTTGCCTCCAAGAACCCCAGCTGCTGCGTTTCGTTTTCATCTTTCTACAATGAAACCGTAGTTCCATGCCCATCTTGCTCTTGTGGTTGTCACAATAAGAAAGATTGCATCAAGGGAGACTCAAAACTACTACAAAAGGCAGGAATCAACACACCGAGAAAGGATAACACACCATTGTTGCAGTGCACACACCATATGTGCCCGATCCGAGTGCACTGGCATGTGAAGCAAAATTACAAGGACTATTGGCGCGTCAAGATTTCTGTCACGAATTTCAACTACCGGCTCAACTACACCGAGTGGACACTCGTTGCACAGCACCCTAATCTCAATAACATCACTCAAGTCTTTAGCTTTGATTACAAGCCCCTTGTTGCTTACCAGTCCATCAATGACACTGGAATGTTCTATGGCATGAAGTTTTACAATGACTTGTTGATGGAAGCCGGGCCTTTAGGAAATGTGCAGTCTGAGGTGCTTATGCAGAAAGACAAGAACACCTTCACATTCAAGCAGGGGTGGGCGTTCCCTAGGAAGGTTTACTTCAACGGTGATGAATGCAGGCTACCTCCTCCCGACGCCTACCCTTCTCTTCCAAACTCCGGTCATGTAGATTCCGTTTCAATCTTAAAAATGGCAGCCTCTTTGCTTCTGATAATGTTTTGTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

456

Amino Acids

50.96

Weight (kDa)

8.86

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 66 - 229 8.2e-67 COBRA-like protein
COB_C PF25079 238 - 427 9e-54 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 245, 945
AciI CCGC 3 cut(s) 122, 516, 588
AclWI GGATC 4 cut(s) 17, 134, 147, 892
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 2 cut(s) 341, 964
AcuI CTGAAG 3 cut(s) 92, 459, 465
AcyI GRCGYC 1 cut(s) 1272
AdeI CACNNNGTG 1 cut(s) 993
AfaI GTAC 3 cut(s) 233, 581, 679
AfiI CCNNNNNNNGG 6 cut(s) 16, 46, 575, 598, 1228, 1295
AflIII ACRYGT 2 cut(s) 56, 674
AgsI TTSAA 7 cut(s) 346, 415, 525, 970, 1204, 1240, 1317
AjnI CCWGG 3 cut(s) 15, 495, 574
AluBI AGCT 7 cut(s) 29, 311, 479, 541, 629, 714, 1047
AluI AGCT 7 cut(s) 29, 311, 479, 541, 629, 714, 1047
Alw21I GWGCWC 3 cut(s) 313, 881, 909
Alw26I GTCTC 2 cut(s) 324, 804
Alw44I GTGCAC 2 cut(s) 877, 905
AlwI GGATC 4 cut(s) 17, 134, 147, 892
AlwNI CAGNNNCTG 2 cut(s) 432, 717
AoxI GGCC 4 cut(s) 87, 489, 589, 1142
ApaLI GTGCAC 2 cut(s) 877, 905
ApeKI GCWGC 5 cut(s) 203, 435, 714, 717, 1331
ApoI RAATTY 2 cut(s) 341, 964
ArsI GACNNNNNNTTYG 4 cut(s) 156, 188, 432, 464
Asp700I GAANNNNTTC 2 cut(s) 221, 1193
AspA2I CCTAGG 1 cut(s) 1223
AspLEI GCGC 1 cut(s) 945
AspS9I GGNCC 6 cut(s) 297, 469, 566, 572, 590, 1142
AsuC2I CCSGG 4 cut(s) 252, 402, 570, 1141
AsuHPI GGTGA 5 cut(s) 105, 202, 511, 547, 1256
AvaII GGWCC 4 cut(s) 297, 469, 566, 572
AvrII CCTAGG 1 cut(s) 1223
BaeGI GKGCMC 3 cut(s) 881, 896, 909
BalI TGGCCA 1 cut(s) 89
BamHI GGATCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 911, 943
BbsI GAAGAC 1 cut(s) 610
Bbv12I GWGCWC 3 cut(s) 313, 881, 909
BbvI GCAGC 5 cut(s) 190, 422, 701, 704, 1343
BccI CCATC 7 cut(s) 48, 185, 261, 616, 772, 1088, 1126
BcgI CGANNNNNNTGC 2 cut(s) 886, 920
BciT130I CCWGG 3 cut(s) 17, 497, 576
BcnI CCSGG 4 cut(s) 252, 402, 570, 1141
BcoDI GTCTC 2 cut(s) 324, 804
BfaI CTAG 3 cut(s) 107, 263, 1224
BfmI CTRYAG 2 cut(s) 117, 204
BisI GCNGC 7 cut(s) 123, 204, 436, 589, 715, 718, 1332
BlnI CCTAGG 1 cut(s) 1223
BlsI GCNGC 7 cut(s) 124, 205, 437, 590, 716, 719, 1333
Bme1390I CCNGG 7 cut(s) 17, 252, 402, 497, 570, 576, 1141
Bme18I GGWCC 4 cut(s) 297, 469, 566, 572
BmgT120I GGNCC 6 cut(s) 297, 469, 566, 572, 590, 1142
BmiI GGNNCC 3 cut(s) 141, 471, 573
BmrFI CCNGG 7 cut(s) 17, 252, 402, 497, 570, 576, 1141
BmsI GCATC 2 cut(s) 464, 810
BpiI GAAGAC 1 cut(s) 610
BpuEI CTTGAG 3 cut(s) 65, 633, 1020
BpuMI CCSGG 4 cut(s) 252, 402, 570, 1141
BsaHI GRCGYC 1 cut(s) 1272
BsaJI CCNNGG 4 cut(s) 250, 300, 575, 1223
BsaWI WCCGGW 2 cut(s) 146, 1295
Bsc4I CCNNNNNNNGG 6 cut(s) 16, 46, 575, 598, 1228, 1295
Bse118I RCCGGY 2 cut(s) 234, 975
Bse1I ACTGG 3 cut(s) 914, 1075, 1096
BseBI CCWGG 3 cut(s) 17, 497, 576
BseDI CCNNGG 4 cut(s) 250, 300, 575, 1223
BseGI GGATG 3 cut(s) 175, 272, 608
BseLI CCNNNNNNNGG 6 cut(s) 16, 46, 575, 598, 1228, 1295
BseMII CTCAG 2 cut(s) 326, 1155
BseNI ACTGG 3 cut(s) 914, 1075, 1096
BseRI GAGGAG 1 cut(s) 1254
BseSI GKGCMC 3 cut(s) 881, 896, 909
BseXI GCAGC 5 cut(s) 190, 422, 701, 704, 1343
BseYI CCCAGC 1 cut(s) 710
BsgI GTGCAG 1 cut(s) 1178
Bsh1236I CGCG 2 cut(s) 245, 945
BshFI GGCC 4 cut(s) 89, 491, 591, 1144
BsiHKAI GWGCWC 3 cut(s) 313, 881, 909
BsiSI CCGG 8 cut(s) 147, 235, 252, 402, 569, 976, 1140, 1296
BslFI GGGAC 2 cut(s) 477, 585
BslI CCNNNNNNNGG 6 cut(s) 16, 46, 575, 598, 1228, 1295
BsmAI GTCTC 2 cut(s) 324, 804
BsmFI GGGAC 2 cut(s) 477, 585
BsmI GAATGC 1 cut(s) 1256
BsnI GGCC 4 cut(s) 89, 491, 591, 1144
Bsp1286I GDGCHC 4 cut(s) 313, 881, 896, 909
Bsp143I GATC 6 cut(s) 22, 75, 139, 159, 631, 897
Bsp19I CCATGG 1 cut(s) 300
Bsp68I TCGCGA 1 cut(s) 245
BspACI CCGC 3 cut(s) 122, 516, 588
BspANI GGCC 4 cut(s) 89, 491, 591, 1144
BspCNI CTCAG 2 cut(s) 325, 1156
BspFNI CGCG 2 cut(s) 245, 945
BspLI GGNNCC 3 cut(s) 141, 471, 573
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 4 cut(s) 17, 134, 147, 892
BsrFI RCCGGY 2 cut(s) 234, 975
BsrI ACTGG 3 cut(s) 914, 1075, 1096
BssAI RCCGGY 2 cut(s) 234, 975
BssECI CCNNGG 4 cut(s) 250, 300, 575, 1223
BssMI GATC 6 cut(s) 22, 75, 139, 159, 631, 897
BssNI GRCGYC 1 cut(s) 1272
BssT1I CCWWGG 2 cut(s) 300, 1223
Bst2UI CCWGG 3 cut(s) 17, 497, 576
Bst4CI ACNGT 8 cut(s) 335, 385, 423, 535, 616, 690, 751, 1244
Bst6I CTCTTC 1 cut(s) 1290
BstACI GRCGYC 1 cut(s) 1272
BstAPI GCANNNNNTGC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 1256
BstDEI CTNAG 2 cut(s) 312, 1164
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 175, 272, 608
BstFNI CGCG 2 cut(s) 245, 945
BstHHI GCGC 1 cut(s) 945
BstKTI GATC 6 cut(s) 25, 78, 142, 162, 634, 900
BstMAI GTCTC 2 cut(s) 324, 804
BstMBI GATC 6 cut(s) 22, 75, 139, 159, 631, 897
BstMWI GCNNNNNNNGC 4 cut(s) 26, 435, 768, 919
BstNI CCWGG 3 cut(s) 17, 497, 576
BstNSI RCATGY 3 cut(s) 60, 678, 917
BstSCI CCNGG 7 cut(s) 15, 250, 400, 495, 568, 574, 1139
BstSFI CTRYAG 2 cut(s) 117, 204
BstSLI GKGCMC 3 cut(s) 881, 896, 909
BstUI CGCG 2 cut(s) 245, 945
BstV1I GCAGC 5 cut(s) 190, 422, 701, 704, 1343
BstV2I GAAGAC 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 4 cut(s) 89, 491, 591, 1144
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 3 cut(s) 175, 272, 608
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 5 cut(s) 489, 612, 881, 907, 1089
BtuMI TCGCGA 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 1256
CaiI CAGNNNCTG 2 cut(s) 432, 717
CfoI GCGC 1 cut(s) 945
Cfr10I RCCGGY 2 cut(s) 234, 975
Cfr13I GGNCC 6 cut(s) 297, 469, 566, 572, 590, 1142
CseI GACGC 3 cut(s) 493, 934, 1280
Csp6I GTAC 3 cut(s) 232, 580, 678
CviQI GTAC 3 cut(s) 232, 580, 678
DdeI CTNAG 2 cut(s) 312, 1164
DpnI GATC 6 cut(s) 24, 77, 141, 161, 633, 899
DpnII GATC 6 cut(s) 22, 75, 139, 159, 631, 897
DraIII CACNNNGTG 1 cut(s) 993
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 1290
EarI CTCTTC 1 cut(s) 1290
EciI GGCGGA 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 300, 1223
Eco24I GRGCYC 1 cut(s) 313
Eco47I GGWCC 4 cut(s) 297, 469, 566, 572
Eco53kI GAGCTC 1 cut(s) 311
Eco57I CTGAAG 3 cut(s) 92, 459, 465
EcoICRI GAGCTC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 469
EcoRII CCWGG 3 cut(s) 15, 495, 574
EcoT14I CCWWGG 2 cut(s) 300, 1223
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 2 cut(s) 300, 1223
FalI AAGNNNNNCTT 4 cut(s) 1178, 1210, 1220, 1252
FaqI GGGAC 2 cut(s) 477, 585
FauNDI CATATG 2 cut(s) 127, 888
Fnu4HI GCNGC 7 cut(s) 123, 204, 436, 589, 715, 718, 1332
FokI GGATG 3 cut(s) 182, 279, 595
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 7 cut(s) 123, 204, 436, 589, 715, 718, 1332
FspBI CTAG 3 cut(s) 107, 263, 1224
GlaI GCGC 1 cut(s) 944
GluI GCNGC 7 cut(s) 123, 204, 436, 589, 715, 718, 1332
GsaI CCCAGC 1 cut(s) 714
HaeIII GGCC 4 cut(s) 89, 491, 591, 1144
HapII CCGG 8 cut(s) 147, 235, 252, 402, 569, 976, 1140, 1296
HgaI GACGC 3 cut(s) 493, 934, 1280
HhaI GCGC 1 cut(s) 945
Hin1I GRCGYC 1 cut(s) 1272
Hin6I GCGC 1 cut(s) 943
HinP1I GCGC 1 cut(s) 943
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 5 cut(s) 36, 646, 812, 837, 1307
HpaII CCGG 8 cut(s) 147, 235, 252, 402, 569, 976, 1140, 1296
HphI GGTGA 5 cut(s) 105, 202, 511, 547, 1256
Hpy166II GTNNAC 6 cut(s) 391, 582, 879, 907, 996, 1234
Hpy188I TCNGA 4 cut(s) 315, 902, 1165, 1347
Hpy188III TCNNGA 6 cut(s) 44, 244, 295, 949, 961, 1268
Hpy8I GTNNAC 6 cut(s) 391, 582, 879, 907, 996, 1234
Hpy99I CGWCG 2 cut(s) 509, 1274
HpyAV CCTTC 5 cut(s) 483, 502, 1204, 1222, 1290
HpyCH4III ACNGT 8 cut(s) 335, 385, 423, 535, 616, 690, 751, 1244
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 435, 768, 919
HpyF3I CTNAG 2 cut(s) 312, 1164
Hsp92I GRCGYC 1 cut(s) 1272
HspAI GCGC 1 cut(s) 943
Kzo9I GATC 6 cut(s) 22, 75, 139, 159, 631, 897
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 5 cut(s) 190, 422, 701, 704, 1343
LweI GCATC 2 cut(s) 464, 810
MaeI CTAG 3 cut(s) 107, 263, 1224
MaeIII GTNAC 6 cut(s) 52, 208, 670, 690, 782, 958
MalI GATC 6 cut(s) 24, 77, 141, 161, 633, 899
MboI GATC 6 cut(s) 22, 75, 139, 159, 631, 897
MboII GAAGA 4 cut(s) 85, 292, 610, 1277
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 4 cut(s) 313, 881, 896, 909
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 341, 925, 964
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 2 cut(s) 640, 806
MmeI TCCRAC 3 cut(s) 117, 167, 404
MnlI CCTC 7 cut(s) 40, 632, 709, 1159, 1272, 1275, 1345
Mox20I TGGCCA 1 cut(s) 89
MroXI GAANNNNTTC 2 cut(s) 221, 1193
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 1322
MslI CAYNNNNRTG 3 cut(s) 265, 912, 1094
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 3 cut(s) 122, 629, 714
MspI CCGG 8 cut(s) 147, 235, 252, 402, 569, 976, 1140, 1296
MspR9I CCNGG 7 cut(s) 17, 252, 402, 497, 570, 576, 1141
Mva1269I GAATGC 1 cut(s) 1256
MvaI CCWGG 3 cut(s) 17, 497, 576
MvnI CGCG 2 cut(s) 245, 945
MwoI GCNNNNNNNGC 4 cut(s) 26, 435, 768, 919
NciI CCSGG 4 cut(s) 252, 402, 570, 1141
NcoI CCATGG 1 cut(s) 300
NdeI CATATG 2 cut(s) 127, 888
NdeII GATC 6 cut(s) 22, 75, 139, 159, 631, 897
NlaIV GGNNCC 3 cut(s) 141, 471, 573
NmuCI GTSAC 4 cut(s) 208, 670, 782, 958
NruI TCGCGA 1 cut(s) 245
NspI RCATGY 3 cut(s) 60, 678, 917
PciI ACATGT 2 cut(s) 56, 674
PctI GAATGC 1 cut(s) 1256
PdmI GAANNNNTTC 2 cut(s) 221, 1193
PfeI GAWTC 3 cut(s) 36, 837, 1307
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 7 cut(s) 124, 205, 437, 590, 716, 719, 1333
PleI GAGTC 2 cut(s) 640, 806
PpsI GAGTC 2 cut(s) 640, 806
PpuMI RGGWCCY 1 cut(s) 469
PscI ACATGT 2 cut(s) 56, 674
Psp124BI GAGCTC 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 3 cut(s) 15, 495, 574
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 3 cut(s) 15, 495, 574
PspN4I GGNNCC 3 cut(s) 141, 471, 573
PspPI GGNCC 6 cut(s) 297, 469, 566, 572, 590, 1142
PspPPI RGGWCCY 1 cut(s) 469
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 2 cut(s) 432, 717
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 629, 714
RruI TCGCGA 1 cut(s) 245
RsaI GTAC 3 cut(s) 233, 581, 679
RsaNI GTAC 3 cut(s) 232, 580, 678
RseI CAYNNNNRTG 3 cut(s) 265, 912, 1094
SacI GAGCTC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 1322
SatI GCNGC 7 cut(s) 123, 204, 436, 589, 715, 718, 1332
Sau3AI GATC 6 cut(s) 22, 75, 139, 159, 631, 897
Sau96I GGNCC 6 cut(s) 297, 469, 566, 572, 590, 1142
SchI GAGTC 2 cut(s) 640, 806
ScrFI CCNGG 7 cut(s) 17, 252, 402, 497, 570, 576, 1141
SduI GDGCHC 4 cut(s) 313, 881, 896, 909
SfaNI GCATC 2 cut(s) 464, 810
SfcI CTRYAG 2 cut(s) 117, 204
SinI GGWCC 4 cut(s) 297, 469, 566, 572
SmiMI CAYNNNNRTG 3 cut(s) 265, 912, 1094
SmlI CTYRAG 3 cut(s) 44, 648, 1035
SmoI CTYRAG 3 cut(s) 44, 648, 1035
Sse9I AATT 3 cut(s) 341, 925, 964
SsiI CCGC 3 cut(s) 122, 516, 588
SspMI CTAG 3 cut(s) 107, 263, 1224
SstI GAGCTC 1 cut(s) 313
StyD4I CCNGG 7 cut(s) 15, 250, 400, 495, 568, 574, 1139
StyI CCWWGG 2 cut(s) 300, 1223
TaaI ACNGT 8 cut(s) 335, 385, 423, 535, 616, 690, 751, 1244
TasI AATT 3 cut(s) 341, 925, 964
TauI GCSGC 2 cut(s) 125, 591
TfiI GAWTC 3 cut(s) 36, 837, 1307
Tru1I TTAA 1 cut(s) 1322
Tru9I TTAA 1 cut(s) 1322
TscAI CASTG 5 cut(s) 489, 619, 881, 914, 1096
TseFI GTSAC 4 cut(s) 208, 670, 782, 958
TseI GCWGC 5 cut(s) 203, 435, 714, 717, 1331
Tsp45I GTSAC 4 cut(s) 208, 670, 782, 958
TspDTI ATGAA 5 cut(s) 230, 720, 759, 1124, 1263
TspGWI ACGGA 1 cut(s) 1300
TspRI CASTG 5 cut(s) 489, 619, 881, 914, 1096
VneI GTGCAC 2 cut(s) 877, 905
VpaK11BI GGWCC 4 cut(s) 297, 469, 566, 572
XapI RAATTY 2 cut(s) 341, 964
XceI RCATGY 3 cut(s) 60, 678, 917
XmaJI CCTAGG 1 cut(s) 1223
XmnI GAANNNNTTC 2 cut(s) 221, 1193
XspI CTAG 3 cut(s) 107, 263, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.