COBRA-like protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G15630 AT5G15630 AT5G15630 AT5G15630 AT5G15630 |
| fragaria_vesca | FvH4_5g13560 FvH4_6g46470 FvH4_6g46470 |
| malus_domestica | MD06G1203800.v1.1 MD09G1072900.v1.1 MD14G1214900.v1.1 MD17G1064300.v1.1 |
| prunus_persica | Prupe.3G250300_v2.0.a1 Prupe.5G207900_v2.0.a1 Prupe.5G207900_v2.0.a1 |
| pyrus_communis | pycom06g18200 pycom17g06440 |
| rosa_chinensis | RchiOBHm_Chr2g0165021 RchiOBHm_Chr7g0183391 |
| rosa_laevigata | RLG00000005050 RLG00000021507 |
| rosa_multiflora | Rmu_sc0000951.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00086110 Rroxscaffold_3G00270480 |
| rosa_rugosa | Rorug02G0512400 Rorug02G0512400 Rorug06G0457600 Rorug06G0457700 |
| rosa_samantha | Rh2AG580400 Rh2BG591700 Rh2CG562200 Rh2DG601800 Rh7AG058800 Rh7BG058800 Rh7CG060400 Rh7DG058500 |
| rosa_wichuraiana | Rw2G048180 Rw7G004840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1245 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1295 |
| AccI | GTMKAC | 1 cut(s) | 618 |
| AccIII | TCCGGA | 1 cut(s) | 1267 |
| AciI | CCGC | 2 cut(s) | 122, 777 |
| AclWI | GGATC | 4 cut(s) | 125, 134, 147, 892 |
| AcoI | YGGCCR | 1 cut(s) | 87 |
| AcsI | RAATTY | 3 cut(s) | 341, 964, 1306 |
| AcuI | CTGAAG | 3 cut(s) | 92, 459, 465 |
| AcyI | GRCGYC | 2 cut(s) | 447, 1272 |
| AdeI | CACNNNGTG | 1 cut(s) | 993 |
| AfaI | GTAC | 4 cut(s) | 233, 581, 679, 906 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 49, 575, 598, 1132, 1224, 1295 |
| AflIII | ACRYGT | 2 cut(s) | 56, 674 |
| AgsI | TTSAA | 6 cut(s) | 346, 525, 970, 1204, 1240, 1317 |
| AjiI | CACGTC | 2 cut(s) | 49, 663 |
| AjnI | CCWGG | 3 cut(s) | 15, 495, 574 |
| AluBI | AGCT | 6 cut(s) | 311, 479, 541, 629, 714, 1047 |
| AluI | AGCT | 6 cut(s) | 311, 479, 541, 629, 714, 1047 |
| Alw21I | GWGCWC | 3 cut(s) | 313, 881, 1193 |
| Alw26I | GTCTC | 1 cut(s) | 324 |
| Alw44I | GTGCAC | 1 cut(s) | 877 |
| AlwI | GGATC | 4 cut(s) | 125, 134, 147, 892 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1337 |
| Ama87I | CYCGRG | 1 cut(s) | 251 |
| Aor13HI | TCCGGA | 1 cut(s) | 1267 |
| AoxI | GGCC | 4 cut(s) | 87, 453, 589, 1215 |
| ApaLI | GTGCAC | 1 cut(s) | 877 |
| ApeKI | GCWGC | 4 cut(s) | 203, 435, 541, 1331 |
| ApoI | RAATTY | 3 cut(s) | 341, 964, 1306 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 156, 188, 432, 464 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 221 |
| AspS9I | GGNCC | 7 cut(s) | 297, 469, 566, 572, 590, 1142, 1215 |
| AsuC2I | CCSGG | 5 cut(s) | 148, 252, 253, 402, 570 |
| AsuHPI | GGTGA | 6 cut(s) | 105, 418, 511, 547, 1024, 1256 |
| AvaI | CYCGRG | 1 cut(s) | 251 |
| AvaII | GGWCC | 5 cut(s) | 297, 469, 566, 572, 1142 |
| BaeGI | GKGCMC | 2 cut(s) | 881, 896 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 571, 604 |
| BalI | TGGCCA | 1 cut(s) | 89 |
| BamHI | GGATCC | 1 cut(s) | 139 |
| BanII | GRGCYC | 1 cut(s) | 313 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 911, 943 |
| Bbv12I | GWGCWC | 3 cut(s) | 313, 881, 1193 |
| BbvI | GCAGC | 4 cut(s) | 190, 422, 528, 1343 |
| BccI | CCATC | 7 cut(s) | 34, 185, 261, 616, 772, 1088, 1288 |
| BciT130I | CCWGG | 3 cut(s) | 17, 497, 576 |
| BcnI | CCSGG | 5 cut(s) | 148, 252, 253, 402, 570 |
| BcoDI | GTCTC | 1 cut(s) | 324 |
| BfaI | CTAG | 2 cut(s) | 107, 263 |
| BfmI | CTRYAG | 3 cut(s) | 117, 204, 750 |
| BfuAI | ACCTGC | 1 cut(s) | 1245 |
| BisI | GCNGC | 5 cut(s) | 123, 204, 436, 542, 1332 |
| BlsI | GCNGC | 5 cut(s) | 124, 205, 437, 543, 1333 |
| Bme1390I | CCNGG | 8 cut(s) | 17, 148, 252, 253, 402, 497, 570, 576 |
| Bme18I | GGWCC | 5 cut(s) | 297, 469, 566, 572, 1142 |
| BmeT110I | CYCGRG | 1 cut(s) | 251 |
| BmgBI | CACGTC | 2 cut(s) | 49, 663 |
| BmgT120I | GGNCC | 7 cut(s) | 297, 469, 566, 572, 590, 1142, 1215 |
| BmiI | GGNNCC | 3 cut(s) | 141, 471, 573 |
| BmrFI | CCNGG | 8 cut(s) | 17, 148, 252, 253, 402, 497, 570, 576 |
| BmsI | GCATC | 1 cut(s) | 810 |
| BpuEI | CTTGAG | 1 cut(s) | 633 |
| BpuMI | CCSGG | 5 cut(s) | 148, 252, 253, 402, 570 |
| BsaHI | GRCGYC | 2 cut(s) | 447, 1272 |
| BsaJI | CCNNGG | 5 cut(s) | 250, 251, 300, 575, 1223 |
| BsaWI | WCCGGW | 1 cut(s) | 1267 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 49, 575, 598, 1132, 1224, 1295 |
| Bse118I | RCCGGY | 3 cut(s) | 234, 975, 1139 |
| Bse1I | ACTGG | 3 cut(s) | 914, 1075, 1096 |
| BseAI | TCCGGA | 1 cut(s) | 1267 |
| BseBI | CCWGG | 3 cut(s) | 17, 497, 576 |
| BseDI | CCNNGG | 5 cut(s) | 250, 251, 300, 575, 1223 |
| BseGI | GGATG | 3 cut(s) | 175, 272, 608 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 49, 575, 598, 1132, 1224, 1295 |
| BseMII | CTCAG | 2 cut(s) | 326, 1155 |
| BseNI | ACTGG | 3 cut(s) | 914, 1075, 1096 |
| BseSI | GKGCMC | 2 cut(s) | 881, 896 |
| BseXI | GCAGC | 4 cut(s) | 190, 422, 528, 1343 |
| BsgI | GTGCAG | 1 cut(s) | 1178 |
| BshFI | GGCC | 4 cut(s) | 89, 455, 591, 1217 |
| BsiHKAI | GWGCWC | 3 cut(s) | 313, 881, 1193 |
| BsiHKCI | CYCGRG | 1 cut(s) | 251 |
| BsiSI | CCGG | 8 cut(s) | 147, 235, 252, 402, 569, 976, 1140, 1268 |
| BslFI | GGGAC | 2 cut(s) | 477, 585 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 49, 575, 598, 1132, 1224, 1295 |
| BsmAI | GTCTC | 1 cut(s) | 324 |
| BsmFI | GGGAC | 2 cut(s) | 477, 585 |
| BsmI | GAATGC | 1 cut(s) | 1256 |
| BsnI | GGCC | 4 cut(s) | 89, 455, 591, 1217 |
| BsoBI | CYCGRG | 1 cut(s) | 251 |
| Bsp1286I | GDGCHC | 4 cut(s) | 313, 881, 896, 1193 |
| Bsp13I | TCCGGA | 1 cut(s) | 1267 |
| Bsp143I | GATC | 6 cut(s) | 75, 130, 139, 159, 631, 897 |
| Bsp19I | CCATGG | 1 cut(s) | 300 |
| BspACI | CCGC | 2 cut(s) | 122, 777 |
| BspANI | GGCC | 4 cut(s) | 89, 455, 591, 1217 |
| BspCNI | CTCAG | 2 cut(s) | 325, 1156 |
| BspEI | TCCGGA | 1 cut(s) | 1267 |
| BspLI | GGNNCC | 3 cut(s) | 141, 471, 573 |
| BspMAI | CTGCAG | 1 cut(s) | 208 |
| BspMI | ACCTGC | 1 cut(s) | 1245 |
| BspPI | GGATC | 4 cut(s) | 125, 134, 147, 892 |
| BsrFI | RCCGGY | 3 cut(s) | 234, 975, 1139 |
| BsrI | ACTGG | 3 cut(s) | 914, 1075, 1096 |
| BssAI | RCCGGY | 3 cut(s) | 234, 975, 1139 |
| BssECI | CCNNGG | 5 cut(s) | 250, 251, 300, 575, 1223 |
| BssMI | GATC | 6 cut(s) | 75, 130, 139, 159, 631, 897 |
| BssNI | GRCGYC | 2 cut(s) | 447, 1272 |
| BssT1I | CCWWGG | 1 cut(s) | 300 |
| Bst2UI | CCWGG | 3 cut(s) | 17, 497, 576 |
| Bst4CI | ACNGT | 9 cut(s) | 335, 385, 423, 535, 616, 690, 751, 876, 1244 |
| Bst6I | CTCTTC | 1 cut(s) | 1290 |
| BstACI | GRCGYC | 2 cut(s) | 447, 1272 |
| BstDEI | CTNAG | 2 cut(s) | 312, 1164 |
| BstDSI | CCRYGG | 1 cut(s) | 300 |
| BstEII | GGTNACC | 1 cut(s) | 1257 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1222 |
| BstF5I | GGATG | 3 cut(s) | 175, 272, 608 |
| BstKTI | GATC | 6 cut(s) | 78, 133, 142, 162, 634, 900 |
| BstMAI | GTCTC | 1 cut(s) | 324 |
| BstMBI | GATC | 6 cut(s) | 75, 130, 139, 159, 631, 897 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 444, 919 |
| BstNI | CCWGG | 3 cut(s) | 17, 497, 576 |
| BstNSI | RCATGY | 3 cut(s) | 60, 678, 917 |
| BstPI | GGTNACC | 1 cut(s) | 1257 |
| BstSCI | CCNGG | 8 cut(s) | 15, 146, 250, 251, 400, 495, 568, 574 |
| BstSFI | CTRYAG | 3 cut(s) | 117, 204, 750 |
| BstSLI | GKGCMC | 2 cut(s) | 881, 896 |
| BstV1I | GCAGC | 4 cut(s) | 190, 422, 528, 1343 |
| BstX2I | RGATCY | 1 cut(s) | 139 |
| BstYI | RGATCY | 1 cut(s) | 139 |
| BsuRI | GGCC | 4 cut(s) | 89, 455, 591, 1217 |
| BtgI | CCRYGG | 1 cut(s) | 300 |
| BtrI | CACGTC | 2 cut(s) | 49, 663 |
| BtsCI | GGATG | 3 cut(s) | 175, 272, 608 |
| BtsI | GCAGTG | 1 cut(s) | 213 |
| BtsIMutI | CAGTG | 5 cut(s) | 213, 612, 881, 907, 1089 |
| BveI | ACCTGC | 1 cut(s) | 1245 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1337 |
| Cfr10I | RCCGGY | 3 cut(s) | 234, 975, 1139 |
| Cfr13I | GGNCC | 7 cut(s) | 297, 469, 566, 572, 590, 1142, 1215 |
| Cfr9I | CCCGGG | 1 cut(s) | 251 |
| CpoI | CGGWCCG | 1 cut(s) | 566 |
| CseI | GACGC | 2 cut(s) | 436, 1280 |
| Csp6I | GTAC | 4 cut(s) | 232, 580, 678, 905 |
| CspI | CGGWCCG | 1 cut(s) | 566 |
| CviQI | GTAC | 4 cut(s) | 232, 580, 678, 905 |
| DdeI | CTNAG | 2 cut(s) | 312, 1164 |
| DpnI | GATC | 6 cut(s) | 77, 132, 141, 161, 633, 899 |
| DpnII | GATC | 6 cut(s) | 75, 130, 139, 159, 631, 897 |
| DraIII | CACNNNGTG | 1 cut(s) | 993 |
| EaeI | YGGCCR | 1 cut(s) | 87 |
| Eam1104I | CTCTTC | 1 cut(s) | 1290 |
| EarI | CTCTTC | 1 cut(s) | 1290 |
| Ecl136II | GAGCTC | 1 cut(s) | 311 |
| Eco130I | CCWWGG | 1 cut(s) | 300 |
| Eco24I | GRGCYC | 1 cut(s) | 313 |
| Eco32I | GATATC | 1 cut(s) | 954 |
| Eco47I | GGWCC | 5 cut(s) | 297, 469, 566, 572, 1142 |
| Eco53kI | GAGCTC | 1 cut(s) | 311 |
| Eco57I | CTGAAG | 3 cut(s) | 92, 459, 465 |
| Eco88I | CYCGRG | 1 cut(s) | 251 |
| Eco91I | GGTNACC | 1 cut(s) | 1257 |
| EcoICRI | GAGCTC | 1 cut(s) | 311 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1222 |
| EcoO109I | RGGNCCY | 1 cut(s) | 469 |
| EcoO65I | GGTNACC | 1 cut(s) | 1257 |
| EcoRI | GAATTC | 1 cut(s) | 1306 |
| EcoRII | CCWGG | 3 cut(s) | 15, 495, 574 |
| EcoRV | GATATC | 1 cut(s) | 954 |
| EcoT14I | CCWWGG | 1 cut(s) | 300 |
| EcoT38I | GRGCYC | 1 cut(s) | 313 |
| ErhI | CCWWGG | 1 cut(s) | 300 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1178, 1210, 1220, 1252 |
| FaqI | GGGAC | 2 cut(s) | 477, 585 |
| FauNDI | CATATG | 2 cut(s) | 127, 888 |
| FblI | GTMKAC | 1 cut(s) | 618 |
| Fnu4HI | GCNGC | 5 cut(s) | 123, 204, 436, 542, 1332 |
| FokI | GGATG | 3 cut(s) | 182, 279, 595 |
| FriOI | GRGCYC | 1 cut(s) | 313 |
| Fsp4HI | GCNGC | 5 cut(s) | 123, 204, 436, 542, 1332 |
| FspBI | CTAG | 2 cut(s) | 107, 263 |
| GluI | GCNGC | 5 cut(s) | 123, 204, 436, 542, 1332 |
| HaeIII | GGCC | 4 cut(s) | 89, 455, 591, 1217 |
| HapII | CCGG | 8 cut(s) | 147, 235, 252, 402, 569, 976, 1140, 1268 |
| HgaI | GACGC | 2 cut(s) | 436, 1280 |
| Hin1I | GRCGYC | 2 cut(s) | 447, 1272 |
| HincII | GTYRAC | 1 cut(s) | 391 |
| HindII | GTYRAC | 1 cut(s) | 391 |
| HinfI | GANTC | 4 cut(s) | 259, 646, 812, 837 |
| HpaII | CCGG | 8 cut(s) | 147, 235, 252, 402, 569, 976, 1140, 1268 |
| HphI | GGTGA | 6 cut(s) | 105, 418, 511, 547, 1024, 1256 |
| Hpy166II | GTNNAC | 9 cut(s) | 258, 391, 426, 582, 619, 879, 907, 996, 1234 |
| Hpy188I | TCNGA | 6 cut(s) | 315, 636, 902, 1165, 1224, 1347 |
| Hpy188III | TCNNGA | 4 cut(s) | 295, 949, 961, 1268 |
| Hpy8I | GTNNAC | 9 cut(s) | 258, 391, 426, 582, 619, 879, 907, 996, 1234 |
| HpyAV | CCTTC | 4 cut(s) | 277, 483, 1204, 1222 |
| HpyCH4III | ACNGT | 9 cut(s) | 335, 385, 423, 535, 616, 690, 751, 876, 1244 |
| HpyCH4IV | ACGT | 2 cut(s) | 48, 662 |
| HpyCH4V | TGCA | 9 cut(s) | 206, 438, 596, 801, 879, 1007, 1159, 1177, 1254 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 444, 919 |
| HpyF3I | CTNAG | 2 cut(s) | 312, 1164 |
| HpySE526I | ACGT | 2 cut(s) | 48, 662 |
| Hsp92I | GRCGYC | 2 cut(s) | 447, 1272 |
| Kpn2I | TCCGGA | 1 cut(s) | 1267 |
| Kzo9I | GATC | 6 cut(s) | 75, 130, 139, 159, 631, 897 |
| LmnI | GCTCC | 1 cut(s) | 308 |
| Lsp1109I | GCAGC | 4 cut(s) | 190, 422, 528, 1343 |
| LweI | GCATC | 1 cut(s) | 810 |
| MaeI | CTAG | 2 cut(s) | 107, 263 |
| MaeII | ACGT | 2 cut(s) | 48, 662 |
| MaeIII | GTNAC | 6 cut(s) | 52, 208, 670, 870, 958, 1257 |
| MalI | GATC | 6 cut(s) | 77, 132, 141, 161, 633, 899 |
| MboI | GATC | 6 cut(s) | 75, 130, 139, 159, 631, 897 |
| MboII | GAAGA | 3 cut(s) | 54, 85, 1277 |
| MflI | RGATCY | 1 cut(s) | 139 |
| MhlI | GDGCHC | 4 cut(s) | 313, 881, 896, 1193 |
| MlsI | TGGCCA | 1 cut(s) | 89 |
| MluCI | AATT | 5 cut(s) | 220, 341, 925, 964, 1306 |
| MluNI | TGGCCA | 1 cut(s) | 89 |
| MlyI | GAGTC | 3 cut(s) | 253, 640, 806 |
| MmeI | TCCRAC | 3 cut(s) | 117, 167, 404 |
| MnlI | CCTC | 9 cut(s) | 466, 509, 630, 632, 709, 1159, 1218, 1275, 1345 |
| Mox20I | TGGCCA | 1 cut(s) | 89 |
| MroI | TCCGGA | 1 cut(s) | 1267 |
| MroXI | GAANNNNTTC | 1 cut(s) | 221 |
| MscI | TGGCCA | 1 cut(s) | 89 |
| MseI | TTAA | 2 cut(s) | 1130, 1322 |
| MslI | CAYNNNNRTG | 2 cut(s) | 912, 1094 |
| Msp20I | TGGCCA | 1 cut(s) | 89 |
| MspA1I | CMGCKG | 1 cut(s) | 629 |
| MspI | CCGG | 8 cut(s) | 147, 235, 252, 402, 569, 976, 1140, 1268 |
| MspR9I | CCNGG | 8 cut(s) | 17, 148, 252, 253, 402, 497, 570, 576 |
| Mva1269I | GAATGC | 1 cut(s) | 1256 |
| MvaI | CCWGG | 3 cut(s) | 17, 497, 576 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 444, 919 |
| NciI | CCSGG | 5 cut(s) | 148, 252, 253, 402, 570 |
| NcoI | CCATGG | 1 cut(s) | 300 |
| NdeI | CATATG | 2 cut(s) | 127, 888 |
| NdeII | GATC | 6 cut(s) | 75, 130, 139, 159, 631, 897 |
| NlaIV | GGNNCC | 3 cut(s) | 141, 471, 573 |
| NmuCI | GTSAC | 3 cut(s) | 208, 670, 958 |
| NspI | RCATGY | 3 cut(s) | 60, 678, 917 |
| PciI | ACATGT | 2 cut(s) | 56, 674 |
| PctI | GAATGC | 1 cut(s) | 1256 |
| PdmI | GAANNNNTTC | 1 cut(s) | 221 |
| PfeI | GAWTC | 1 cut(s) | 837 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1295 |
| PfoI | TCCNGGA | 1 cut(s) | 568 |
| PkrI | GCNGC | 5 cut(s) | 124, 205, 437, 543, 1333 |
| PleI | GAGTC | 3 cut(s) | 253, 640, 806 |
| PpsI | GAGTC | 3 cut(s) | 253, 640, 806 |
| PpuMI | RGGWCCY | 1 cut(s) | 469 |
| PscI | ACATGT | 2 cut(s) | 56, 674 |
| Psp124BI | GAGCTC | 1 cut(s) | 313 |
| Psp5II | RGGWCCY | 1 cut(s) | 469 |
| Psp6I | CCWGG | 3 cut(s) | 15, 495, 574 |
| PspEI | GGTNACC | 1 cut(s) | 1257 |
| PspGI | CCWGG | 3 cut(s) | 15, 495, 574 |
| PspN4I | GGNNCC | 3 cut(s) | 141, 471, 573 |
| PspPI | GGNCC | 7 cut(s) | 297, 469, 566, 572, 590, 1142, 1215 |
| PspPPI | RGGWCCY | 1 cut(s) | 469 |
| PstI | CTGCAG | 1 cut(s) | 208 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1337 |
| PsuI | RGATCY | 1 cut(s) | 139 |
| PvuII | CAGCTG | 1 cut(s) | 629 |
| RsaI | GTAC | 4 cut(s) | 233, 581, 679, 906 |
| RsaNI | GTAC | 4 cut(s) | 232, 580, 678, 905 |
| RseI | CAYNNNNRTG | 2 cut(s) | 912, 1094 |
| Rsr2I | CGGWCCG | 1 cut(s) | 566 |
| RsrII | CGGWCCG | 1 cut(s) | 566 |
| SacI | GAGCTC | 1 cut(s) | 313 |
| SaqAI | TTAA | 2 cut(s) | 1130, 1322 |
| SatI | GCNGC | 5 cut(s) | 123, 204, 436, 542, 1332 |
| Sau3AI | GATC | 6 cut(s) | 75, 130, 139, 159, 631, 897 |
| Sau96I | GGNCC | 7 cut(s) | 297, 469, 566, 572, 590, 1142, 1215 |
| SchI | GAGTC | 3 cut(s) | 253, 640, 806 |
| ScrFI | CCNGG | 8 cut(s) | 17, 148, 252, 253, 402, 497, 570, 576 |
| SduI | GDGCHC | 4 cut(s) | 313, 881, 896, 1193 |
| SfaNI | GCATC | 1 cut(s) | 810 |
| SfcI | CTRYAG | 3 cut(s) | 117, 204, 750 |
| SinI | GGWCC | 5 cut(s) | 297, 469, 566, 572, 1142 |
| SmaI | CCCGGG | 1 cut(s) | 253 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 912, 1094 |
| SmlI | CTYRAG | 1 cut(s) | 648 |
| SmoI | CTYRAG | 1 cut(s) | 648 |
| Sse9I | AATT | 5 cut(s) | 220, 341, 925, 964, 1306 |
| SsiI | CCGC | 2 cut(s) | 122, 777 |
| SspMI | CTAG | 2 cut(s) | 107, 263 |
| SstI | GAGCTC | 1 cut(s) | 313 |
| StyD4I | CCNGG | 8 cut(s) | 15, 146, 250, 251, 400, 495, 568, 574 |
| StyI | CCWWGG | 1 cut(s) | 300 |
| TaaI | ACNGT | 9 cut(s) | 335, 385, 423, 535, 616, 690, 751, 876, 1244 |
| TaiI | ACGT | 2 cut(s) | 51, 665 |
| TaqII | GACCGA | 1 cut(s) | 554 |
| TasI | AATT | 5 cut(s) | 220, 341, 925, 964, 1306 |
| TatI | WGTACW | 1 cut(s) | 904 |
| TauI | GCSGC | 1 cut(s) | 125 |
| TfiI | GAWTC | 1 cut(s) | 837 |
| Tru1I | TTAA | 2 cut(s) | 1130, 1322 |
| Tru9I | TTAA | 2 cut(s) | 1130, 1322 |
| TscAI | CASTG | 5 cut(s) | 213, 619, 881, 914, 1096 |
| TseFI | GTSAC | 3 cut(s) | 208, 670, 958 |
| TseI | GCWGC | 4 cut(s) | 203, 435, 541, 1331 |
| Tsp45I | GTSAC | 3 cut(s) | 208, 670, 958 |
| TspDTI | ATGAA | 4 cut(s) | 230, 759, 1124, 1263 |
| TspGWI | ACGGA | 2 cut(s) | 123, 946 |
| TspMI | CCCGGG | 1 cut(s) | 251 |
| TspRI | CASTG | 5 cut(s) | 213, 619, 881, 914, 1096 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1295 |
| VneI | GTGCAC | 1 cut(s) | 877 |
| VpaK11BI | GGWCC | 5 cut(s) | 297, 469, 566, 572, 1142 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1222 |
| XapI | RAATTY | 3 cut(s) | 341, 964, 1306 |
| XceI | RCATGY | 3 cut(s) | 60, 678, 917 |
| XmaI | CCCGGG | 1 cut(s) | 251 |
| XmiI | GTMKAC | 1 cut(s) | 618 |
| XmnI | GAANNNNTTC | 1 cut(s) | 221 |
| XspI | CTAG | 2 cut(s) | 107, 263 |