Prupe.3G250200_v2.0.a1

NADH-ubiquinone reductase complex 1 MLRQ subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015346
Physical Location & Seq
Reverse (-)
24006674 .. 24007587
914 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G250200.2

Sequence Viewer

Length: 261 bp
ATGGGGCGTTGGGTTAGGCCTGAGGTGTACCCTCTAATGGCTGCGATGACATTTGTGACAAGCTTGTGTGCATTTCAGCTTACAAGGAACGTGTTCCTCAACCCGGATGTCAGAATCGACAAAGCTAAGCGTGGAATGGGAGTGCTGGAAAACAAAGAAGAGGGAGAGAAGTATGCAGAGCATGGGCTGCGCAAGTTCCTCCGCACCCGCCCGCCTGAGATCATGCCTACCATCAACCAATTCTTCTCTCAAGACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B12D

Protein Analysis

87

Amino Acids

10.05

Weight (kDa)

8.93

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29970 AT3G29970 AT3G29970
fragaria_vesca FvH4_6g46480
malus_domestica MD09G1073000.v1.1 MD17G1064400.v1.1
prunus_persica Prupe.3G250200_v2.0.a1
pyrus_communis pycom17g06450
rosa_chinensis RchiOBHm_Chr2g0165051
rosa_multiflora Rmu_sc0001097.1_g000024
rosa_roxburghii Rroxscaffold_2G00086090
rosa_rugosa Rorug02G0512400
rosa_samantha Rh2AG580600 Rh2CG562500 Rh2DG602000
rosa_wichuraiana Rw2G048200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 191
AciI CCGC 3 cut(s) 202, 208, 212
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 37, 103
AflIII ACRYGT 1 cut(s) 90
AluBI AGCT 3 cut(s) 63, 79, 125
AluI AGCT 3 cut(s) 63, 79, 125
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 41, 187
Asp700I GAANNNNTTC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 104
AxyI CCTNAGG 1 cut(s) 21
BbvI GCAGC 2 cut(s) 28, 174
BccI CCATC 1 cut(s) 239
BcnI CCSGG 1 cut(s) 104
BisI GCNGC 2 cut(s) 42, 188
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 2 cut(s) 43, 189
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
Bpu1102I GCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 103
Bse21I CCTNAGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 2 cut(s) 37, 103
BseMII CTCAG 2 cut(s) 12, 207
BseXI GCAGC 2 cut(s) 28, 174
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 37, 103
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 219
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 3 cut(s) 202, 208, 212
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 2 cut(s) 13, 208
BssMI GATC 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 3 cut(s) 21, 126, 216
BstF5I GGATG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 28, 174
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 182, 223
CviJI RGCY 6 cut(s) 19, 41, 63, 79, 125, 187
CviKI_1 RGCY 6 cut(s) 19, 41, 63, 79, 125, 187
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 3 cut(s) 21, 126, 216
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 19
Eco81I CCTNAGG 1 cut(s) 21
FaeI CATG 2 cut(s) 185, 226
FaiI YATR 3 cut(s) 174, 183, 224
FatI CATG 2 cut(s) 181, 222
FauI CCCGC 2 cut(s) 215, 219
Fnu4HI GCNGC 2 cut(s) 42, 188
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 42, 188
FspI TGCGCA 1 cut(s) 191
GlaI GCGC 1 cut(s) 191
GluI GCNGC 2 cut(s) 42, 188
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 192
Hin1II CATG 2 cut(s) 185, 226
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 71, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 3 cut(s) 21, 126, 216
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 2 cut(s) 185, 226
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 4 cut(s) 33, 117, 131, 228
Lsp1109I GCAGC 2 cut(s) 28, 174
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 170, 235
MluCI AATT 1 cut(s) 239
MnlI CCTC 5 cut(s) 16, 42, 107, 154, 209
MroXI GAANNNNTTC 1 cut(s) 92
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 187
NciI CCSGG 1 cut(s) 104
NdeII GATC 1 cut(s) 219
NlaIII CATG 2 cut(s) 185, 226
NmuCI GTSAC 1 cut(s) 55
NsbI TGCGCA 1 cut(s) 191
PceI AGGCCT 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 2 cut(s) 43, 189
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SatI GCNGC 2 cut(s) 42, 188
Sau3AI GATC 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 104
SetI ASST 5 cut(s) 27, 65, 81, 93, 127
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
Sse9I AATT 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 3 cut(s) 202, 208, 212
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 102
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 239
TfiI GAWTC 1 cut(s) 114
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 41, 187
Tsp45I GTSAC 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.