FvH4_6g47390

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005273
Physical Location & Seq
Forward (+)
35922268 .. 35925924
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47390.t2

Sequence Viewer

Length: 540 bp
ATGGCTGGAGTGCAAGACCAATTGGAGATCAAGTTTCGGTTGAGTGATGGATCAGATATTGGCCCCAAAAGCTTTCCTGCTGCTACAAGTGTGTCAACCTTGAAAGAAAGTATTCTTGCGCAGTGGCCTAAAGAGAAGGAAAATGGTCCAAGGACTGTCAAAGATGTCAAGCTGATAAGTGCTGGAAAAATATTGGAGAACAACAAAACAGTTGGGGAATGCCGAAGCCCAATATGCGATGTTCCTACAACTATGCATGTCGTTGTTCAACCACCTTCTTTGGAGAAAGGTACGAGTATATTCTGCTGTGTACATAAGACAAATTCTCTCTTCTTTTTCTCCGGTCTCAATGAAGACATAGTCTCTTTCCAAGTGGTTTATTTTGGCAGAGACATCTCATTTGTATACTGGTTCTATGTATTTGAGAAAAATGGTAAAAGTCAAGGCAATAATCGGTTTTTTGTAGGTTTGCAAATTCTTGCAAATCTCAAAACACCTTATGTTAAGCTTGCTATATATAGTTGTCTACCTCCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

180

Amino Acids

19.96

Weight (kDa)

8.94

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 6 - 98 2.9e-38 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 120
AccI GTMKAC 2 cut(s) 405, 526
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 2 cut(s) 322, 474
AfaI GTAC 2 cut(s) 292, 312
AgsI TTSAA 2 cut(s) 103, 269
AluBI AGCT 3 cut(s) 72, 172, 508
AluI AGCT 3 cut(s) 72, 172, 508
Alw26I GTCTC 3 cut(s) 350, 367, 384
AlwI GGATC 1 cut(s) 58
AoxI GGCC 2 cut(s) 61, 125
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 322, 474
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 62, 146
AvaII GGWCC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 3 cut(s) 350, 367, 384
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 62, 146
BmiI GGNNCC 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bse1I ACTGG 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 413
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 2 cut(s) 63, 127
BsiSI CCGG 1 cut(s) 342
BsmAI GTCTC 3 cut(s) 350, 367, 384
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 2 cut(s) 63, 127
Bso31I GGTCTC 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 27, 50
BspANI GGCC 2 cut(s) 63, 127
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 2 cut(s) 27, 50
BssNAI GTATAC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 149
Bst1107I GTATAC 1 cut(s) 406
Bst4CI ACNGT 2 cut(s) 157, 211
Bst6I CTCTTC 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 1 cut(s) 534
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 2 cut(s) 30, 53
BstMAI GTCTC 3 cut(s) 350, 367, 384
BstMBI GATC 2 cut(s) 27, 50
BstMWI GCNNNNNNNGC 2 cut(s) 69, 234
BstNSI RCATGY 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 360
BstZ17I GTATAC 1 cut(s) 406
BsuRI GGCC 2 cut(s) 63, 127
BtgZI GCGATG 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 510
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 62, 146
Csp6I GTAC 2 cut(s) 291, 311
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 1 cut(s) 257
CviJI RGCY 7 cut(s) 5, 63, 72, 127, 172, 228, 508
CviKI_1 RGCY 7 cut(s) 5, 63, 72, 127, 172, 228, 508
CviQI GTAC 2 cut(s) 291, 311
DdeI CTNAG 1 cut(s) 534
DpnI GATC 2 cut(s) 29, 52
DpnII GATC 2 cut(s) 27, 50
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 260
FatI CATG 1 cut(s) 256
FblI GTMKAC 2 cut(s) 405, 526
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 63, 127
HapII CCGG 1 cut(s) 342
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 2 cut(s) 70, 506
HpaII CCGG 1 cut(s) 342
Hpy166II GTNNAC 4 cut(s) 96, 311, 406, 527
Hpy188I TCNGA 1 cut(s) 55
Hpy8I GTNNAC 4 cut(s) 96, 311, 406, 527
HpyAV CCTTC 2 cut(s) 130, 285
HpyCH4III ACNGT 2 cut(s) 157, 211
HpyCH4V TGCA 4 cut(s) 13, 256, 472, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 234
HpyF3I CTNAG 1 cut(s) 534
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 2 cut(s) 27, 50
LpnPI CCDG 4 cut(s) 90, 168, 355, 394
Lsp1109I GCAGC 1 cut(s) 67
MalI GATC 2 cut(s) 29, 52
MboI GATC 2 cut(s) 27, 50
MboII GAAGA 2 cut(s) 322, 365
MfeI CAATTG 1 cut(s) 20
MluCI AATT 3 cut(s) 20, 322, 474
MnlI CCTC 1 cut(s) 540
Mph1103I ATGCAT 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 1 cut(s) 504
MspI CCGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 69, 234
NdeII GATC 2 cut(s) 27, 50
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 64
NsbI TGCGCA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 1 cut(s) 260
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 111
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 62, 146
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 2 cut(s) 292, 312
RsaNI GTAC 2 cut(s) 291, 311
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 27, 50
Sau96I GGNCC 2 cut(s) 62, 146
SetI ASST 9 cut(s) 74, 101, 174, 277, 292, 469, 499, 510, 532
SinI GGWCC 1 cut(s) 146
Sse9I AATT 3 cut(s) 20, 322, 474
SspI AATATT 1 cut(s) 192
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 157, 211
TasI AATT 3 cut(s) 20, 322, 474
TatI WGTACW 1 cut(s) 310
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 128
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 1 cut(s) 128
Tth111I GACNNNGTC 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 322, 474
XceI RCATGY 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 405, 526
XmnI GAANNNNTTC 1 cut(s) 111
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.