Prupe.3G258300_v2.0.a1

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0005273
Physical Location & Seq
Forward (+)
24542357 .. 24545523
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G258300.1

Sequence Viewer

Length: 354 bp
ATGGCTGGGGTGCAAGATCAATTGGAGATCAAGTTTCGGTTGACTGATGGATCAGATATTGGCCCCAAAAGTTTTCCTGCTGCTACAAGTGTTGTAACCTTGAAGGAAAGCATTCTTGCGCAATGGCCTAAAGAGAAGGAGAATGGTCCAAGGACTGTTAAAGATGTCAAGCTAATAAGCGCAGGAAGAATATTGGAGAACAACAGAACAGTTGGGGAGTGCCGAAGTCCATTATGTGATGTCCCTGGTGGAGTTACAACTATGCATGTCGTTGTTCAACCACCTTCATTGGAGAAAGAAAAAAAACTGATGAGCGAACCGAAGCAGAACAAGTGCGTTTGTGTTATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

118

Amino Acids

12.78

Weight (kDa)

8.73

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 352
Acc16I TGCGCA 1 cut(s) 120
AclWI GGATC 1 cut(s) 58
AgsI TTSAA 2 cut(s) 103, 278
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
AlwI GGATC 1 cut(s) 58
AoxI GGCC 2 cut(s) 61, 125
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 2 cut(s) 121, 182
AspS9I GGNCC 2 cut(s) 62, 146
AvaII GGWCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 246
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 62, 146
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 149, 244
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 149, 244
BseMI GCAATG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 2 cut(s) 63, 127
BslFI GGGAC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 2 cut(s) 63, 127
Bsp143I GATC 3 cut(s) 16, 27, 50
BspANI GGCC 2 cut(s) 63, 127
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 149, 244
BssMI GATC 3 cut(s) 16, 27, 50
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 157, 211
BstHHI GCGC 2 cut(s) 121, 182
BstKTI GATC 3 cut(s) 19, 30, 53
BstMBI GATC 3 cut(s) 16, 27, 50
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 63, 127
CfoI GCGC 2 cut(s) 121, 182
Cfr13I GGNCC 2 cut(s) 62, 146
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 1 cut(s) 266
CviJI RGCY 4 cut(s) 5, 63, 127, 172
CviKI_1 RGCY 4 cut(s) 5, 63, 127, 172
DpnI GATC 3 cut(s) 18, 29, 52
DpnII GATC 3 cut(s) 16, 27, 50
Eco130I CCWWGG 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 269
FaiI YATR 5 cut(s) 235, 263, 267, 347, 352
FaqI GGGAC 1 cut(s) 227
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 2 cut(s) 120, 181
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 2 cut(s) 63, 127
HhaI GCGC 2 cut(s) 121, 182
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 2 cut(s) 119, 180
HinP1I GCGC 2 cut(s) 119, 180
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 3 cut(s) 97, 130, 294
HpyCH4III ACNGT 2 cut(s) 157, 211
HpyCH4V TGCA 2 cut(s) 13, 265
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 2 cut(s) 119, 180
Kzo9I GATC 3 cut(s) 16, 27, 50
LpnPI CCDG 4 cut(s) 90, 168, 231, 258
Lsp1109I GCAGC 1 cut(s) 67
MaeIII GTNAC 2 cut(s) 94, 253
MalI GATC 3 cut(s) 18, 29, 52
MboI GATC 3 cut(s) 16, 27, 50
MboII GAAGA 1 cut(s) 198
MfeI CAATTG 1 cut(s) 20
MluCI AATT 1 cut(s) 20
Mph1103I ATGCAT 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 246
NdeII GATC 3 cut(s) 16, 27, 50
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 64
NsbI TGCGCA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PctI GAATGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 62, 146
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 16, 27, 50
Sau96I GGNCC 2 cut(s) 62, 146
ScrFI CCNGG 1 cut(s) 246
SetI ASST 3 cut(s) 101, 174, 286
SinI GGWCC 1 cut(s) 146
Sse9I AATT 1 cut(s) 20
SspI AATATT 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 157, 211
TasI AATT 1 cut(s) 20
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 146
XceI RCATGY 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 111
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.