RLG00000021619

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005273
Physical Location & Seq
Forward (+)
76778737 .. 76780736
2000 bp
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UTR
Exon/CDS
Intron
RLM00000021619

Sequence Viewer

Length: 477 bp
ATGGCTGGAGTGCAAGACCAATTGGAAATCAAGTTTCGGTTGAGTGATGGATCAGATATTGGCCCCAAAAGCTTTCCTGCTGCTACAAGTGTTTCGACCTTGAAAGAAAGTATTCTTGCGCAATGGCCTAAAGACAAGGAGAATGGTCCAAGGACTGTTAAAGATGTCAAGCTGATAAGTGCAGGAAAGATATTGGAGAACAACAGAACAGTTGGGGAGTGCCGAAGCCCAATATGCGATGTTCCTACAACTATGCATGTTGTTGTTCAACCACCTTCTTCGGAGAAAGAAAAGAAAATGACAATGGGGATAACATCATTTTTAGGTAGAGAGAGAGTTGGAGCTAGTGAAGAAAATGGATTTGGTGAAACTGATTCATCTATATTGGAAACATGCAGGCTTCATAGAATCATATGTCATTGTTTGGTTCAGGTCCATCATACTTTGTTTGTTTTCAACTCTATTAGACTATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

159

Amino Acids

17.44

Weight (kDa)

7.64

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 6 - 100 1.3e-39 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 120
AclWI GGATC 1 cut(s) 58
AgsI TTSAA 3 cut(s) 103, 269, 457
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AluBI AGCT 3 cut(s) 72, 172, 344
AluI AGCT 3 cut(s) 72, 172, 344
AlwI GGATC 1 cut(s) 58
AoxI GGCC 2 cut(s) 61, 125
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 3 cut(s) 62, 146, 433
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 2 cut(s) 146, 433
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 41, 444
BfaI CTAG 1 cut(s) 345
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 2 cut(s) 146, 433
BmgT120I GGNCC 3 cut(s) 62, 146, 433
BmiI GGNNCC 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 2 cut(s) 63, 127
BsnI GGCC 2 cut(s) 63, 127
Bsp143I GATC 1 cut(s) 50
BspANI GGCC 2 cut(s) 63, 127
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 157, 211
BstC8I GCNNGC 1 cut(s) 398
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 69, 234
BstNSI RCATGY 2 cut(s) 260, 396
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 63, 127
BtgZI GCGATG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 398
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 3 cut(s) 62, 146, 433
CviAII CATG 2 cut(s) 257, 393
CviJI RGCY 8 cut(s) 5, 63, 72, 127, 172, 228, 344, 400
CviKI_1 RGCY 8 cut(s) 5, 63, 72, 127, 172, 228, 344, 400
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 146, 433
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 260, 396
FatI CATG 2 cut(s) 256, 392
FauNDI CATATG 1 cut(s) 413
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 345
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 63, 127
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 260, 396
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 2 cut(s) 374, 408
HphI GGTGA 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 55, 283
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 2 cut(s) 157, 211
HpyCH4V TGCA 4 cut(s) 13, 182, 256, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 234
Hsp92II CATG 2 cut(s) 260, 396
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 4 cut(s) 90, 168, 382, 416
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 345
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 2 cut(s) 270, 362
MfeI CAATTG 1 cut(s) 20
MluCI AATT 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 319
Mph1103I ATGCAT 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 1 cut(s) 159
MunI CAATTG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 69, 234
NdeI CATATG 1 cut(s) 413
NdeII GATC 1 cut(s) 50
NlaIII CATG 2 cut(s) 260, 396
NlaIV GGNNCC 1 cut(s) 64
NsbI TGCGCA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 2 cut(s) 260, 396
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 374, 408
PkrI GCNGC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 3 cut(s) 62, 146, 433
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 50
Sau96I GGNCC 3 cut(s) 62, 146, 433
SetI ASST 7 cut(s) 74, 101, 174, 277, 328, 346, 435
SinI GGWCC 2 cut(s) 146, 433
Sse9I AATT 1 cut(s) 20
SspMI CTAG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 157, 211
TaqI TCGA 1 cut(s) 95
TasI AATT 1 cut(s) 20
TfiI GAWTC 2 cut(s) 374, 408
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 366, 392
VpaK11BI GGWCC 2 cut(s) 146, 433
XceI RCATGY 2 cut(s) 260, 396
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.