Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016905

Physical Location & Seq

Genomic Coordinates Reverse (-)

36193577 .. 36194833

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCAAGGAAGAGAAAAGTTAGTGAAGGAGTGGAAGAGACCAAAAGTTGCAGCGAGGGAACCATGGCTTGGGATGAGATGGTGAAGGAAGCATCAGCTGCTGCAGCACTGGGAGGAGCAGCAAGAAGAGCTCGAAAGCGTTTTGTTGGTGTTCGCCAAAGACCCTCCGGAAGATGGGTGGCAGAGATTAAGGACACTATTCAAAAGATAAGGGTGTGGTTGGGGACATTTGACACAGCTGAGGAAGCAGCCAGGGCCTATGATGAGGCAGCTTGCTTGCTCCGCGGTGCCAATACTAGAACAAATTTCTGGCCTTGTTCCCCATCACCATCTTCTACTCCAGCACTACCCTCAAAGATCACAAACCTTCTTCTCCAGAGGCTCAAAGCAAGGAACAATAACACCTCTTGTACTGCTGCTCCTTTGCCTGTTAACCATCAACAGAAGCAGTATCAGGAAGAAGCTGCAGCAGAGTTCTCGGAAAACCAGTACACTGATTTCCTTAATGATCCAGAAGATTACATCACAAGCAACAATGAATACATCCCTGAGATTAGTGCAAGTAGCATCGACTACATGACATCAAGTTTTGAGTCCTGCTTGACTGAAAAGGAAGAGTACTCCATTGCAAGAGAAGCTGATCAACAAATGGACTATGGGAATTTGAGTGAAGTGGCTGGGACTACTTATAGCGGCGGGGATGCAAATTTTGTTTGTGCAGGATCAGAGGAAGATGTGGAAGAAGAAGAAGTAAATGGTCAAGTGGGTGCCATAGACTTCCAATTTGTGGATGATATTGGATCAACAGACTACTATTCTCCTTCTCCTTTTGAGATTGCTGAAGAGATAGAAGAGGCAGTGGAGCCAGAGACCTATGCAGATGAACCTTCCATGCTTAGAGCAGCCATGAAGAGGATGAAATATGAGAGGAAATTCTCTGCTTCTCTCTATGCCTTCAATGGCATACCCGAATGCTTAAAGTTAAAGATTGAATCTTCAACAACAGGAAACACAAGAATGAGAGGAATATCTGACCTGCAGAGGGCCTGCAGTAACAAGAACAAAGAGGAAGCTGCAGCAAAACAAGAATATGAAGGAAAGAAAGAAGAGGAGAACCAGCAGACATCAACTGATATGGGATCTTCTTCTTCCTCCTCTTCCTTTTCTTCCATGAGTAGTGCTGTGAATGGTGATGGTGAGTTGTCACTTTGGAACTCACTTGATCTTCAGCCTATCTGCTTTTTGTCTACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

419

Amino Acids

46.21

Weight (kDa)

4.59

Isoelectric Point (pI)

62.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	47 - 96	3.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47880
malus_domestica	MD09G1056000.v1.1 MD17G1053600.v1.1
prunus_persica	Prupe.3G263000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167081
rosa_laevigata	RLG00000021695
rosa_multiflora	Rmu_sc0010966.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083740
rosa_rugosa	Rorug02G0528300
rosa_samantha	Rh2AG595300 Rh2BG606300 Rh2CG577300 Rh2DG618000
rosa_wichuraiana	Rw2G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1044
AccB1I	GGYRCC	2 cut(s)	287, 767
AccB7I	CCANNNNNTGG	2 cut(s)	69, 787
AccI	GTMKAC	1 cut(s)	1247
AccII	CGCG	1 cut(s)	285
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	4 cut(s)	283, 285, 693, 696
AclWI	GGATC	4 cut(s)	503, 730, 808, 1147
AcsI	RAATTY	4 cut(s)	304, 661, 706, 932
AcuI	CTGAAG	2 cut(s)	861, 1211
AfaI	GTAC	3 cut(s)	412, 491, 620
AfiI	CCNNNNNNNGG	5 cut(s)	69, 174, 787, 912, 1042
AgsI	TTSAA	4 cut(s)	203, 958, 992, 999
AjnI	CCWGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	7 cut(s)	98, 131, 239, 272, 464, 638, 1073
AluI	AGCT	7 cut(s)	98, 131, 239, 272, 464, 638, 1073
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	2 cut(s)	32, 863
AlwI	GGATC	4 cut(s)	503, 730, 808, 1147
AlwNI	CAGNNNCTG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	3 cut(s)	255, 311, 1044
ApoI	RAATTY	4 cut(s)	304, 661, 706, 932
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
AspS9I	GGNCC	2 cut(s)	255, 1044
AsuHPI	GGTGA	4 cut(s)	94, 318, 1202, 1208
BanI	GGYRCC	2 cut(s)	287, 767
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	240
BccI	CCATC	6 cut(s)	73, 168, 331, 337, 444, 1187
BcgI	CGANNNNNNTGC	2 cut(s)	459, 493
BciT130I	CCWGG	1 cut(s)	253
BclI	TGATCA	1 cut(s)	640
BcoDI	GTCTC	2 cut(s)	32, 863
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	5 cut(s)	102, 465, 1037, 1048, 1074
BfuAI	ACCTGC	1 cut(s)	1044
BmcAI	AGTACT	1 cut(s)	620
Bme1390I	CCNGG	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	255, 1044
BmiI	GGNNCC	4 cut(s)	61, 289, 769, 864
BmrFI	CCNGG	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	3 cut(s)	101, 576, 691
BmuI	ACTGGG	1 cut(s)	119
BpmI	CTGGAG	2 cut(s)	324, 359
Bpu10I	CCTNAGC	1 cut(s)	240
BsaI	GGTCTC	2 cut(s)	32, 863
BsaJI	CCNNGG	3 cut(s)	63, 252, 283
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 174, 787, 912, 1042
Bse1I	ACTGG	2 cut(s)	114, 487
Bse3DI	GCAATG	1 cut(s)	624
BseAI	TCCGGA	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	3 cut(s)	63, 252, 283
BseGI	GGATG	5 cut(s)	79, 543, 706, 796, 921
BseLI	CCNNNNNNNGG	5 cut(s)	69, 174, 787, 912, 1042
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	231, 540
BseNI	ACTGG	2 cut(s)	114, 487
BseRI	GAGGAG	3 cut(s)	129, 1124, 1144
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	738
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	257, 313, 1046
BshNI	GGYRCC	2 cut(s)	287, 767
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	238, 694
BslI	CCNNNNNNNGG	5 cut(s)	69, 174, 787, 912, 1042
BsmAI	GTCTC	2 cut(s)	32, 863
BsmFI	GGGAC	2 cut(s)	238, 694
BsmI	GAATGC	1 cut(s)	977
BsnI	GGCC	3 cut(s)	257, 313, 1046
Bso31I	GGTCTC	2 cut(s)	32, 863
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	7 cut(s)	357, 508, 640, 722, 800, 1139, 1222
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	4 cut(s)	283, 285, 693, 696
BspANI	GGCC	3 cut(s)	257, 313, 1046
BspCNI	CTCAG	2 cut(s)	232, 541
BspEI	TCCGGA	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	4 cut(s)	61, 289, 769, 864
BspMAI	CTGCAG	5 cut(s)	106, 469, 1041, 1052, 1078
BspMI	ACCTGC	1 cut(s)	1044
BspPI	GGATC	4 cut(s)	503, 730, 808, 1147
BspQI	GCTCTTC	1 cut(s)	121
BspT107I	GGYRCC	2 cut(s)	287, 767
BspTNI	GGTCTC	2 cut(s)	32, 863
BsrDI	GCAATG	1 cut(s)	624
BsrI	ACTGG	2 cut(s)	114, 487
BssECI	CCNNGG	3 cut(s)	63, 252, 283
BssMI	GATC	7 cut(s)	357, 508, 640, 722, 800, 1139, 1222
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	253
Bst6I	CTCTTC	9 cut(s)	5, 30, 121, 609, 837, 846, 905, 1101, 1162
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	274, 278, 1048
BstDEI	CTNAG	3 cut(s)	240, 549, 896
BstDSI	CCRYGG	2 cut(s)	63, 283
BstF5I	GGATG	5 cut(s)	79, 543, 706, 796, 921
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	7 cut(s)	360, 511, 643, 725, 803, 1142, 1225
BstMAI	GTCTC	2 cut(s)	32, 863
BstMBI	GATC	7 cut(s)	357, 508, 640, 722, 800, 1139, 1222
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 104, 128, 245, 254, 282, 635
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	5 cut(s)	102, 465, 1037, 1048, 1074
BstUI	CGCG	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	1139
BstYI	RGATCY	1 cut(s)	1139
BsuRI	GGCC	3 cut(s)	257, 313, 1046
BtgI	CCRYGG	2 cut(s)	63, 283
BtsCI	GGATG	5 cut(s)	79, 543, 706, 796, 921
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	3 cut(s)	107, 492, 864
BveI	ACCTGC	1 cut(s)	1044
Cac8I	GCNNGC	3 cut(s)	274, 278, 1048
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	255, 1044
Cfr42I	CCGCGG	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	411, 490, 619
CviAII	CATG	5 cut(s)	64, 577, 892, 907, 1171
CviQI	GTAC	3 cut(s)	411, 490, 619
DdeI	CTNAG	3 cut(s)	240, 549, 896
DpnI	GATC	7 cut(s)	359, 510, 642, 724, 802, 1141, 1224
DpnII	GATC	7 cut(s)	357, 508, 640, 722, 800, 1139, 1222
Eam1104I	CTCTTC	9 cut(s)	5, 30, 121, 609, 837, 846, 905, 1101, 1162
EarI	CTCTTC	9 cut(s)	5, 30, 121, 609, 837, 846, 905, 1101, 1162
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	133
Eco31I	GGTCTC	2 cut(s)	32, 863
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	861, 1211
EcoICRI	GAGCTC	1 cut(s)	131
EcoO109I	RGGNCCY	2 cut(s)	255, 1044
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	5 cut(s)	67, 580, 895, 910, 1174
FaqI	GGGAC	2 cut(s)	238, 694
FatI	CATG	5 cut(s)	63, 576, 891, 906, 1170
FauI	CCCGC	1 cut(s)	689
FbaI	TGATCA	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	1247
FokI	GGATG	5 cut(s)	86, 530, 713, 803, 928
FriOI	GRGCYC	1 cut(s)	133
FspBI	CTAG	1 cut(s)	297
GsaI	CCCAGC	1 cut(s)	681
GsuI	CTGGAG	2 cut(s)	324, 359
HaeIII	GGCC	3 cut(s)	257, 313, 1046
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	5 cut(s)	67, 580, 895, 910, 1174
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	2 cut(s)	593, 992
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	4 cut(s)	94, 318, 1202, 1208
Hpy166II	GTNNAC	3 cut(s)	433, 492, 1248
Hpy188I	TCNGA	3 cut(s)	481, 727, 1033
Hpy188III	TCNNGA	4 cut(s)	168, 376, 455, 512
Hpy8I	GTNNAC	3 cut(s)	433, 492, 1248
HpyAV	CCTTC	7 cut(s)	20, 79, 377, 831, 897, 964, 1088
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 104, 128, 245, 254, 282, 635
HpyF3I	CTNAG	3 cut(s)	240, 549, 896
Hsp92II	CATG	5 cut(s)	67, 580, 895, 910, 1174
Kpn2I	TCCGGA	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	640
KspAI	GTTAAC	1 cut(s)	433
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	7 cut(s)	357, 508, 640, 722, 800, 1139, 1222
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	4 cut(s)	116, 285, 424, 862
LweI	GCATC	3 cut(s)	101, 576, 691
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	1052, 1203
MalI	GATC	7 cut(s)	359, 510, 642, 724, 802, 1141, 1224
MboI	GATC	7 cut(s)	357, 508, 640, 722, 800, 1139, 1222
MflI	RGATCY	1 cut(s)	1139
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	6 cut(s)	304, 661, 706, 782, 932, 1252
MlyI	GAGTC	1 cut(s)	602
MroI	TCCGGA	1 cut(s)	167
MseI	TTAA	5 cut(s)	189, 432, 504, 977, 983
MslI	CAYNNNNRTG	1 cut(s)	1016
MspA1I	CMGCKG	3 cut(s)	98, 239, 285
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	977
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	7 cut(s)	98, 104, 128, 245, 254, 282, 635
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	7 cut(s)	357, 508, 640, 722, 800, 1139, 1222
NlaIII	CATG	5 cut(s)	67, 580, 895, 910, 1174
NlaIV	GGNNCC	4 cut(s)	61, 289, 769, 864
NmuCI	GTSAC	1 cut(s)	1203
PciSI	GCTCTTC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	977
PfeI	GAWTC	1 cut(s)	992
PflMI	CCANNNNNTGG	2 cut(s)	69, 787
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	61, 289, 769, 864
PspPI	GGNCC	2 cut(s)	255, 1044
PstI	CTGCAG	5 cut(s)	106, 469, 1041, 1052, 1078
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	1139
PvuII	CAGCTG	2 cut(s)	98, 239
RsaI	GTAC	3 cut(s)	412, 491, 620
RsaNI	GTAC	3 cut(s)	411, 490, 619
RseI	CAYNNNNRTG	1 cut(s)	1016
SacI	GAGCTC	1 cut(s)	133
SacII	CCGCGG	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	5 cut(s)	189, 432, 504, 977, 983
Sau3AI	GATC	7 cut(s)	357, 508, 640, 722, 800, 1139, 1222
Sau96I	GGNCC	2 cut(s)	255, 1044
ScaI	AGTACT	1 cut(s)	620
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	133
SfaNI	GCATC	3 cut(s)	101, 576, 691
SfcI	CTRYAG	5 cut(s)	102, 465, 1037, 1048, 1074
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	1016
Sse9I	AATT	6 cut(s)	304, 661, 706, 782, 932, 1252
SsiI	CCGC	4 cut(s)	283, 285, 693, 696
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	2 cut(s)	133, 570
TasI	AATT	6 cut(s)	304, 661, 706, 782, 932, 1252
TatI	WGTACW	3 cut(s)	410, 489, 618
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	1 cut(s)	992
Tru1I	TTAA	5 cut(s)	189, 432, 504, 977, 983
Tru9I	TTAA	5 cut(s)	189, 432, 504, 977, 983
TscAI	CASTG	3 cut(s)	114, 499, 864
TseFI	GTSAC	1 cut(s)	1203
Tsp45I	GTSAC	1 cut(s)	1203
TspDTI	ATGAA	5 cut(s)	552, 897, 923, 932, 1107
TspRI	CASTG	3 cut(s)	114, 499, 864
Van91I	CCANNNNNTGG	2 cut(s)	69, 787
XapI	RAATTY	4 cut(s)	304, 661, 706, 932
XmiI	GTMKAC	1 cut(s)	1247
XspI	CTAG	1 cut(s)	297
ZrmI	AGTACT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.