Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016905

Physical Location & Seq

Genomic Coordinates Forward (+)

4168805 .. 4170073

Gene Structure 1269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1053600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCAAGGAAGAGAAAAGTTAGTGAGGGAGTGGAAGACAACAACGCTACTTCAAGTGAGGGAACCATGGGTTGGGATGAGATGGTGAATGAAGCTTCCGCTGTTGCCGAGCTAGGCGGAGCACGTAGGGCGCGAAAGCGCTTTGTTGGTGTCCGGCAAAGACCCTCTGGAAGATGGGTGGCCGAGATCAAGGATACCATTCAAAAAATTAGGGTTTGGCTAGGCACCTTTGACACTGCTGAGGAAGCAGCTAGGGCTTACGATGAGGCTGCCTGCTTGCTTCGCGGTGCCAACACCCGAACCAACTTCTGGCCTTGCTCCCATTCGCCGTCTTCAACCCCGGCGCTCCCCTCGAAGATCACAAACCTCCTCCTCCAGAGGCTGAAAGCAAGAAACAACGCCAACTCTTGCTCTCCTCCTTCTTCTGCTCCTCTCCCTATCATCAACCACCAACACGATCACAATCTTCACGAACAAGCAGCAAAAACCGAATTCTCTGAAACATACACGGATTTCCTCAACGATCCCGAAGATTACTACATCACAAGCAGCAACAATCATGACATCATCACTGATCATATCAGTGCAAGCAGCATTGACTACATGACATCGAGCTTAGAGTCATGCTTAACTAACAAGGAAACTGATCACATAGAGTACGGTAACTTGAGTGAATTGGTGCAACAGACTTACAGCTGCGGAGATGCAAATTTCGTAGCAGAAGGATCGGAGGAAGATGTTGATCCAGAACAAGAACAAGAAGAGGAAATGAACGGAGATCAAGTTGGAGTTATAGACTTCCAGTTTGTCGATGATATCGGAGCATCCAACTCAAACTGCTACTCTCCATCGCCTTTCGAGATTGCTGAGGAGATAGAGGAGCCGGTTCTGGAGGCTGAGAGCTACACCGACGAGCCTTCGATGCTGAGAGCCGCCATGAAGAGAATGAAGTACGAGAGGAAGTTTTCGGCTTCGCTCTACGCCTTCAATGGGATTCCCGAGTGTTTGAAGTTAAGAATCGGATCGGTGAATGGGAATGGGAAAGGTAGAGGGGTGTCCGAGTGTTTGAGCAACCTTCAGAGAGCGTGCAGTAACAAGAAAGAAGAGGAGGTTGTTGTTGCTGTGGCGGCGGCGGGGGAACACCAACGAAATGATTCGAAACAGGAGGAGCAGGGTTCGTCAATGGATGTTTCTCTGAGTAGTGATGGTGAATTGTCACTCTGGAGCTCACTTGATCTGCCGCCAATCTGCCTTTTGTCAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

423

Amino Acids

46.59

Weight (kDa)

4.67

Isoelectric Point (pI)

62.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	47 - 96	3.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47880
malus_domestica	MD09G1056000.v1.1 MD17G1053600.v1.1
prunus_persica	Prupe.3G263000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167081
rosa_laevigata	RLG00000021695
rosa_multiflora	Rmu_sc0010966.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083740
rosa_rugosa	Rorug02G0528300
rosa_samantha	Rh2AG595300 Rh2BG606300 Rh2CG577300 Rh2DG618000
rosa_wichuraiana	Rw2G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 287
AccB7I	CCANNNNNTGG	2 cut(s)	72, 309
AccII	CGCG	2 cut(s)	133, 285
AciI	CCGC	9 cut(s)	99, 117, 285, 699, 933, 1127, 1130, 1133, 1241
AclWI	GGATC	4 cut(s)	518, 733, 737, 1030
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	491, 709
AcuI	CTGAAG	1 cut(s)	1061
AfaI	GTAC	2 cut(s)	659, 953
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	72, 309, 990
AgsI	TTSAA	5 cut(s)	54, 203, 336, 988, 1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	7 cut(s)	95, 112, 251, 615, 696, 903, 1227
AluI	AGCT	7 cut(s)	95, 112, 251, 615, 696, 903, 1227
Alw21I	GWGCWC	2 cut(s)	124, 1229
AlwI	GGATC	4 cut(s)	518, 733, 737, 1030
AlwNI	CAGNNNCTG	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	998
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	2 cut(s)	180, 311
ApeKI	GCWGC	6 cut(s)	248, 269, 479, 549, 591, 696
ApoI	RAATTY	2 cut(s)	491, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
Asp700I	GAANNNNTTC	1 cut(s)	1153
AspLEI	GCGC	3 cut(s)	133, 141, 346
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	3 cut(s)	97, 1039, 1220
AsuII	TTCGAA	1 cut(s)	1157
AvaI	CYCGRG	1 cut(s)	998
BanI	GGYRCC	2 cut(s)	224, 287
BanII	GRGCYC	1 cut(s)	1229
BbsI	GAAGAC	2 cut(s)	42, 324
Bbv12I	GWGCWC	2 cut(s)	124, 1229
BbvCI	CCTCAGC	2 cut(s)	240, 867
BbvI	GCAGC	6 cut(s)	256, 260, 491, 561, 603, 683
BccI	CCATC	4 cut(s)	76, 168, 856, 1199
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	4 cut(s)	251, 285, 708, 742
BciVI	GTATCC	1 cut(s)	187
BclI	TGATCA	2 cut(s)	574, 646
BcnI	CCSGG	1 cut(s)	341
BfaI	CTAG	3 cut(s)	113, 221, 252
BfoI	RGCGCY	2 cut(s)	142, 347
BfuI	GTATCC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	998
BmiI	GGNNCC	4 cut(s)	64, 226, 289, 882
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	3 cut(s)	694, 833, 912
BpiI	GAAGAC	2 cut(s)	42, 324
BpmI	CTGGAG	3 cut(s)	359, 911, 1243
Bpu10I	CCTNAGC	2 cut(s)	240, 867
Bpu14I	TTCGAA	1 cut(s)	1157
BpuEI	CTTGAG	1 cut(s)	688
BpuMI	CCSGG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	125
BsaBI	GATNNNNATC	2 cut(s)	462, 741
BsaJI	CCNNGG	2 cut(s)	66, 339
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 309, 990
Bse118I	RCCGGY	1 cut(s)	883
Bse1I	ACTGG	1 cut(s)	802
Bse8I	GATNNNNATC	2 cut(s)	462, 741
BseDI	CCNNGG	2 cut(s)	66, 339
BseGI	GGATG	3 cut(s)	82, 824, 1192
BseJI	GATNNNNATC	2 cut(s)	462, 741
BseLI	CCNNNNNNNGG	3 cut(s)	72, 309, 990
BseMII	CTCAG	5 cut(s)	231, 858, 888, 917, 1187
BseNI	ACTGG	1 cut(s)	802
BseRI	GAGGAG	8 cut(s)	359, 362, 405, 420, 884, 893, 1121, 1181
BseXI	GCAGC	6 cut(s)	256, 260, 491, 561, 603, 683
BsgI	GTGCAG	1 cut(s)	1108
Bsh1236I	CGCG	2 cut(s)	133, 285
BshFI	GGCC	2 cut(s)	182, 313
BshNI	GGYRCC	2 cut(s)	224, 287
BsiHKAI	GWGCWC	2 cut(s)	124, 1229
BsiHKCI	CYCGRG	1 cut(s)	998
BsiSI	CCGG	3 cut(s)	154, 341, 884
BslI	CCNNNNNNNGG	3 cut(s)	72, 309, 990
BsnI	GGCC	2 cut(s)	182, 313
BsoBI	CYCGRG	1 cut(s)	998
Bsp119I	TTCGAA	1 cut(s)	1157
Bsp1286I	GDGCHC	2 cut(s)	124, 1229
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	9 cut(s)	99, 117, 285, 699, 933, 1127, 1130, 1133, 1241
BspANI	GGCC	2 cut(s)	182, 313
BspCNI	CTCAG	5 cut(s)	232, 859, 889, 918, 1188
BspFNI	CGCG	2 cut(s)	133, 285
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	4 cut(s)	64, 226, 289, 882
BspPI	GGATC	4 cut(s)	518, 733, 737, 1030
BspT104I	TTCGAA	1 cut(s)	1157
BspT107I	GGYRCC	2 cut(s)	224, 287
BsrFI	RCCGGY	1 cut(s)	883
BsrI	ACTGG	1 cut(s)	802
BssAI	RCCGGY	1 cut(s)	883
BssECI	CCNNGG	2 cut(s)	66, 339
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	4 cut(s)	5, 756, 935, 1098
BstBAI	YACGTR	1 cut(s)	125
BstBI	TTCGAA	1 cut(s)	1157
BstC8I	GCNNGC	4 cut(s)	274, 278, 589, 1087
BstDEI	CTNAG	6 cut(s)	240, 616, 867, 897, 926, 1196
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	82, 824, 1192
BstFNI	CGCG	2 cut(s)	133, 285
BstH2I	RGCGCY	2 cut(s)	142, 347
BstHHI	GCGC	3 cut(s)	133, 141, 346
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 245, 254, 282, 922, 1127
BstSCI	CCNGG	1 cut(s)	339
BstUI	CGCG	2 cut(s)	133, 285
BstV1I	GCAGC	6 cut(s)	256, 260, 491, 561, 603, 683
BstV2I	GAAGAC	2 cut(s)	42, 324
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	182, 313
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	834
BtsCI	GGATG	3 cut(s)	82, 824, 1192
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	234, 570, 589
Cac8I	GCNNGC	4 cut(s)	274, 278, 589, 1087
CaiI	CAGNNNCTG	1 cut(s)	382
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	3 cut(s)	133, 141, 346
Cfr10I	RCCGGY	1 cut(s)	883
Csp6I	GTAC	2 cut(s)	658, 952
CviAII	CATG	5 cut(s)	67, 560, 604, 624, 937
CviQI	GTAC	2 cut(s)	658, 952
DdeI	CTNAG	6 cut(s)	240, 616, 867, 897, 926, 1196
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	4 cut(s)	5, 756, 935, 1098
EarI	CTCTTC	4 cut(s)	5, 756, 935, 1098
EciI	GGCGGA	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	1227
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	1229
Eco32I	GATATC	1 cut(s)	817
Eco47III	AGCGCT	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	1227
Eco57I	CTGAAG	1 cut(s)	1061
Eco88I	CYCGRG	1 cut(s)	998
EcoICRI	GAGCTC	1 cut(s)	1227
EcoRI	GAATTC	1 cut(s)	491
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	1229
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	5 cut(s)	70, 563, 607, 627, 940
FaiI	YATR	9 cut(s)	68, 505, 561, 579, 605, 625, 653, 794, 938
FatI	CATG	5 cut(s)	66, 559, 603, 623, 936
FauI	CCCGC	1 cut(s)	1126
FbaI	TGATCA	2 cut(s)	574, 646
FokI	GGATG	3 cut(s)	89, 811, 1199
FriOI	GRGCYC	1 cut(s)	1229
FspBI	CTAG	3 cut(s)	113, 221, 252
GlaI	GCGC	3 cut(s)	132, 140, 345
GsuI	CTGGAG	3 cut(s)	359, 911, 1243
HaeII	RGCGCY	2 cut(s)	142, 347
HaeIII	GGCC	2 cut(s)	182, 313
HapII	CCGG	3 cut(s)	154, 341, 884
HhaI	GCGC	3 cut(s)	133, 141, 346
Hin1II	CATG	5 cut(s)	70, 563, 607, 627, 940
Hin6I	GCGC	3 cut(s)	131, 139, 344
HinP1I	GCGC	3 cut(s)	131, 139, 344
HincII	GTYRAC	1 cut(s)	1260
HindII	GTYRAC	1 cut(s)	1260
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	4 cut(s)	620, 994, 1017, 1154
HpaII	CCGG	3 cut(s)	154, 341, 884
HphI	GGTGA	3 cut(s)	97, 1039, 1220
Hpy166II	GTNNAC	1 cut(s)	1260
Hpy188I	TCNGA	7 cut(s)	499, 730, 821, 1022, 1060, 1080, 1197
Hpy8I	GTNNAC	1 cut(s)	1260
Hpy99I	CGWCG	1 cut(s)	914
HpyAV	CCTTC	5 cut(s)	429, 716, 927, 994, 1085
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	587, 682, 707, 1089
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 245, 254, 282, 922, 1127
HpyF3I	CTNAG	6 cut(s)	240, 616, 867, 897, 926, 1196
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	5 cut(s)	70, 563, 607, 627, 940
HspAI	GCGC	3 cut(s)	131, 139, 344
Ksp22I	TGATCA	2 cut(s)	574, 646
LmnI	GCTCC	8 cut(s)	119, 323, 351, 433, 821, 880, 1168, 1224
Lsp1109I	GCAGC	6 cut(s)	256, 260, 491, 561, 603, 683
LweI	GCATC	3 cut(s)	694, 833, 912
MaeI	CTAG	3 cut(s)	113, 221, 252
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	662, 1091, 1215
MhlI	GDGCHC	2 cut(s)	124, 1229
MluCI	AATT	6 cut(s)	207, 491, 674, 709, 1211, 1264
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	2 cut(s)	766, 852
MroXI	GAANNNNTTC	1 cut(s)	1153
MseI	TTAA	2 cut(s)	629, 1013
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	101, 696
MspI	CCGG	3 cut(s)	154, 341, 884
MspR9I	CCNGG	1 cut(s)	341
MvnI	CGCG	2 cut(s)	133, 285
MwoI	GCNNNNNNNGC	6 cut(s)	128, 245, 254, 282, 922, 1127
NciI	CCSGG	1 cut(s)	341
NcoI	CCATGG	1 cut(s)	66
NlaIII	CATG	5 cut(s)	70, 563, 607, 627, 940
NlaIV	GGNNCC	4 cut(s)	64, 226, 289, 882
NmeAIII	GCCGAG	2 cut(s)	133, 208
NmuCI	GTSAC	1 cut(s)	1215
NspV	TTCGAA	1 cut(s)	1157
PagI	TCATGA	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	1153
PfeI	GAWTC	3 cut(s)	994, 1017, 1154
PflMI	CCANNNNNTGG	2 cut(s)	72, 309
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
Ppu21I	YACGTR	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	1229
PspN4I	GGNNCC	4 cut(s)	64, 226, 289, 882
PstNI	CAGNNNCTG	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	696
RsaI	GTAC	2 cut(s)	659, 953
RsaNI	GTAC	2 cut(s)	658, 952
RseI	CAYNNNNRTG	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	1229
SaqAI	TTAA	2 cut(s)	629, 1013
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	2 cut(s)	124, 1229
SfaNI	GCATC	3 cut(s)	694, 833, 912
SfuI	TTCGAA	1 cut(s)	1157
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
Sse9I	AATT	6 cut(s)	207, 491, 674, 709, 1211, 1264
SsiI	CCGC	9 cut(s)	99, 117, 285, 699, 933, 1127, 1130, 1133, 1241
SspMI	CTAG	3 cut(s)	113, 221, 252
SstI	GAGCTC	1 cut(s)	1229
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	6 cut(s)	353, 611, 810, 858, 920, 1157
TasI	AATT	6 cut(s)	207, 491, 674, 709, 1211, 1264
TauI	GCSGC	4 cut(s)	935, 1130, 1133, 1243
TfiI	GAWTC	3 cut(s)	994, 1017, 1154
Tru1I	TTAA	2 cut(s)	629, 1013
Tru9I	TTAA	2 cut(s)	629, 1013
TscAI	CASTG	3 cut(s)	241, 577, 589
TseFI	GTSAC	1 cut(s)	1215
TseI	GCWGC	6 cut(s)	248, 269, 479, 549, 591, 696
Tsp45I	GTSAC	1 cut(s)	1215
TspDTI	ATGAA	4 cut(s)	105, 785, 953, 962
TspGWI	ACGGA	2 cut(s)	524, 789
TspRI	CASTG	3 cut(s)	241, 577, 589
Van91I	CCANNNNNTGG	2 cut(s)	72, 309
XapI	RAATTY	2 cut(s)	491, 709
XmnI	GAANNNNTTC	1 cut(s)	1153
XspI	CTAG	3 cut(s)	113, 221, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.