Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016905

Physical Location & Seq

Genomic Coordinates Reverse (-)

24811600 .. 24813357

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G263000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCAAGGAAGAGAAAAGTTAGTGATGGAGTGGAAGACAGGAGTTCCAGTGAGGGAACCATGGCTTGGGATGAGATGGTGAAGGAAGCTTCGGCTGCTGCAGAGCTAGGAGGAGCACGAAGAGCTCGAAAACGCTTTGTCGGTGTCCGCCAAAGACCCTCCGGAAGATGGGTGGCTGAGATTAAGGACACCATTCAAAAGATAAGAGTGTGGTTGGGAACATTTGACACCGCTGAGGAAGCAGCCAGGGCCTATGATGAGGCTGCTTGCTTGCTCCGCGGTGCCAATACTCGAACCAATTTCTGGCCTTGCTCACATTCACCATCTTCAACACCAGCACTTCCCTCAAAGATCACAAACCTTCTCCTGCAGAGGCTCAAAGCAAGAAACAATAGCAGCTCTTGTTCTGCTCCTTCAGCTCCTTTGCCTATCAACCACCATCAAATGCAGCAACATGCTGATCATCAGGAAGAAGAAGCAGGAGCAGATTTCTCAGAAACCCAATACACTGATTTCCTTAATGATCCTGAAGATTACATCACAAGCAACAATCATGACATCATTAGTGCAAGTAGCATTGACTACATGACATCAAGCTTCGAATCTTGCTTGACTGAGAAGGAAGAGTACTCTACTGCAAGAGAAACTGATCAAATGGACTATGGCAATTTGAGTGAAGTGGCACAGACTTACAGTGGCGGGGATGCAAATTTTGTCGGTGAAGGATCACAGGAAGATATGGATCAAGAAGAAGAAGAAGAGGTCAATGATCAAGTTGGTGCGATTGATTTCCAGTTTGTGGATGATATTGGAGCATCCAACTACTACTCTCCATCTCCTTTTGACATTGCTGATGAGGAGATAGAGGAGCCAGTGGAGCCAGAGACCTATGCAGATGAGCCTTCAATGCTAAGAGCAGCCATGAAGAGAATGAAATATGAAAGAAAGTTCTCTGCTTCTCTCTATGCCTTCAATGGCATACCTGAGTGCTTAAAGTTAAAGATTGGATCTTCATCATCATCATCATCAGCAGGAAATGCCAAAGGGAGAGGCATATCTGAGTCCTTAAACAACCTTCAGAGAGCCTGTAACAAGAACAAAGAGGAAGCTGCTGCTGCTGCTGCAAAACAAGAATATCAGGAGGTGGTGATGGGGAAGAAAGAAGAGGAAGAAACCCAACAGAGTTCAATGGATATTTCTCTGAGTAGTGATGGTGAATTGTCACTCTGGAGCTCACTTGATCTGCAACCCATCTGCTTTTTGTCAACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

425

Amino Acids

46.9

Weight (kDa)

4.58

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47880
malus_domestica	MD09G1056000.v1.1 MD17G1053600.v1.1
prunus_persica	Prupe.3G263000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167081
rosa_laevigata	RLG00000021695
rosa_multiflora	Rmu_sc0010966.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083740
rosa_rugosa	Rorug02G0528300
rosa_samantha	Rh2AG595300 Rh2BG606300 Rh2CG577300 Rh2DG618000
rosa_wichuraiana	Rw2G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccB7I	CCANNNNNTGG	3 cut(s)	66, 303, 799
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	5 cut(s)	148, 231, 277, 279, 699
AclWI	GGATC	4 cut(s)	518, 733, 750, 1015
AcsI	RAATTY	1 cut(s)	709
AcuI	CTGAAG	3 cut(s)	399, 549, 1061
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	4 cut(s)	66, 168, 303, 799
AgsI	TTSAA	5 cut(s)	197, 330, 906, 973, 1188
AjnI	CCWGG	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	8 cut(s)	89, 106, 125, 399, 419, 597, 1109, 1233
AluI	AGCT	8 cut(s)	89, 106, 125, 399, 419, 597, 1109, 1233
Alw21I	GWGCWC	3 cut(s)	118, 127, 1235
Alw26I	GTCTC	1 cut(s)	878
AlwI	GGATC	4 cut(s)	518, 733, 750, 1015
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	2 cut(s)	249, 305
ApoI	RAATTY	1 cut(s)	709
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	5 cut(s)	91, 312, 731, 1159, 1226
AsuII	TTCGAA	1 cut(s)	600
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	2 cut(s)	127, 1235
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	3 cut(s)	118, 127, 1235
BbvCI	CCTCAGC	1 cut(s)	234
BccI	CCATC	9 cut(s)	20, 70, 162, 331, 447, 841, 1144, 1205, 1259
BciT130I	CCWGG	1 cut(s)	247
BclI	TGATCA	3 cut(s)	460, 649, 769
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	2 cut(s)	99, 368
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	4 cut(s)	58, 283, 870, 879
BmrFI	CCNGG	1 cut(s)	247
BmsI	GCATC	2 cut(s)	694, 824
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	1249
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	600
BsaBI	GATNNNNATC	2 cut(s)	741, 1012
BsaI	GGTCTC	1 cut(s)	878
BsaJI	CCNNGG	3 cut(s)	60, 246, 277
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 168, 303, 799
Bse1I	ACTGG	3 cut(s)	48, 793, 872
Bse3DI	GCAATG	1 cut(s)	846
Bse8I	GATNNNNATC	2 cut(s)	741, 1012
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	3 cut(s)	60, 246, 277
BseGI	GGATG	4 cut(s)	76, 709, 808, 815
BseJI	GATNNNNATC	2 cut(s)	741, 1012
BseLI	CCNNNNNNNGG	4 cut(s)	66, 168, 303, 799
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	7 cut(s)	168, 225, 507, 606, 975, 1050, 1193
BseNI	ACTGG	3 cut(s)	48, 793, 872
BseRI	GAGGAG	3 cut(s)	126, 872, 881
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	251, 307
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	3 cut(s)	118, 127, 1235
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	4 cut(s)	66, 168, 303, 799
BsmAI	GTCTC	1 cut(s)	878
BsnI	GGCC	2 cut(s)	251, 307
Bso31I	GGTCTC	1 cut(s)	878
Bsp119I	TTCGAA	1 cut(s)	600
Bsp1286I	GDGCHC	3 cut(s)	118, 127, 1235
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	9 cut(s)	351, 460, 523, 649, 725, 742, 769, 1007, 1240
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	5 cut(s)	148, 231, 277, 279, 699
BspANI	GGCC	2 cut(s)	251, 307
BspCNI	CTCAG	7 cut(s)	169, 226, 506, 607, 976, 1051, 1194
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	4 cut(s)	58, 283, 870, 879
BspMAI	CTGCAG	2 cut(s)	103, 372
BspPI	GGATC	4 cut(s)	518, 733, 750, 1015
BspQI	GCTCTTC	1 cut(s)	115
BspT104I	TTCGAA	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	3 cut(s)	48, 793, 872
BssECI	CCNNGG	3 cut(s)	60, 246, 277
BssMI	GATC	9 cut(s)	351, 460, 523, 649, 725, 742, 769, 1007, 1240
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	695
Bst6I	CTCTTC	6 cut(s)	5, 115, 618, 753, 920, 1158
BstAPI	GCANNNNNTGC	1 cut(s)	1037
BstBI	TTCGAA	1 cut(s)	600
BstC8I	GCNNGC	2 cut(s)	268, 272
BstDEI	CTNAG	8 cut(s)	177, 234, 493, 615, 911, 984, 1059, 1202
BstDSI	CCRYGG	2 cut(s)	60, 277
BstF5I	GGATG	4 cut(s)	76, 709, 808, 815
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	9 cut(s)	354, 463, 526, 652, 728, 745, 772, 1010, 1243
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	9 cut(s)	351, 460, 523, 649, 725, 742, 769, 1007, 1240
BstNI	CCWGG	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	245
BstSFI	CTRYAG	2 cut(s)	99, 368
BstUI	CGCG	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	1007
BsuRI	GGCC	2 cut(s)	251, 307
BtgI	CCRYGG	2 cut(s)	60, 277
BtsCI	GGATG	4 cut(s)	76, 709, 808, 815
BtsIMutI	CAGTG	4 cut(s)	55, 507, 700, 879
Cac8I	GCNNGC	2 cut(s)	268, 272
CciI	TCATGA	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	249
Cfr42I	CCGCGG	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	5 cut(s)	61, 455, 554, 586, 922
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	8 cut(s)	177, 234, 493, 615, 911, 984, 1059, 1202
DpnI	GATC	9 cut(s)	353, 462, 525, 651, 727, 744, 771, 1009, 1242
DpnII	GATC	9 cut(s)	351, 460, 523, 649, 725, 742, 769, 1007, 1240
Eam1104I	CTCTTC	6 cut(s)	5, 115, 618, 753, 920, 1158
EarI	CTCTTC	6 cut(s)	5, 115, 618, 753, 920, 1158
EciI	GGCGGA	1 cut(s)	137
Ecl136II	GAGCTC	2 cut(s)	125, 1233
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	2 cut(s)	127, 1235
Eco31I	GGTCTC	1 cut(s)	878
Eco53kI	GAGCTC	2 cut(s)	125, 1233
Eco57I	CTGAAG	3 cut(s)	399, 549, 1061
EcoICRI	GAGCTC	2 cut(s)	125, 1233
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	127, 1235
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	5 cut(s)	64, 458, 557, 589, 925
FatI	CATG	5 cut(s)	60, 454, 553, 585, 921
FauI	CCCGC	1 cut(s)	692
FbaI	TGATCA	3 cut(s)	460, 649, 769
FokI	GGATG	4 cut(s)	83, 716, 802, 815
FriOI	GRGCYC	2 cut(s)	127, 1235
FspBI	CTAG	1 cut(s)	107
GsuI	CTGGAG	1 cut(s)	1249
HaeIII	GGCC	2 cut(s)	251, 307
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	5 cut(s)	64, 458, 557, 589, 925
HincII	GTYRAC	1 cut(s)	1266
HindII	GTYRAC	1 cut(s)	1266
HindIII	AAGCTT	2 cut(s)	87, 595
HinfI	GANTC	2 cut(s)	602, 1061
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	5 cut(s)	91, 312, 731, 1159, 1226
Hpy166II	GTNNAC	1 cut(s)	1266
Hpy188I	TCNGA	4 cut(s)	496, 1060, 1080, 1203
Hpy188III	TCNNGA	7 cut(s)	162, 467, 527, 554, 746, 1139, 1228
Hpy8I	GTNNAC	1 cut(s)	1266
HpyAV	CCTTC	8 cut(s)	76, 371, 423, 613, 716, 912, 979, 1085
HpyCH4III	ACNGT	1 cut(s)	695
HpyCH4V	TGCA	9 cut(s)	101, 370, 448, 569, 638, 707, 893, 1124, 1246
HpyF3I	CTNAG	8 cut(s)	177, 234, 493, 615, 911, 984, 1059, 1202
Hsp92II	CATG	5 cut(s)	64, 458, 557, 589, 925
Kpn2I	TCCGGA	1 cut(s)	161
Ksp22I	TGATCA	3 cut(s)	460, 649, 769
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	9 cut(s)	351, 460, 523, 649, 725, 742, 769, 1007, 1240
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	9 cut(s)	113, 279, 415, 424, 482, 812, 868, 877, 1230
LweI	GCATC	2 cut(s)	694, 824
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	1088, 1221
MalI	GATC	9 cut(s)	353, 462, 525, 651, 727, 744, 771, 1009, 1242
MboI	GATC	9 cut(s)	351, 460, 523, 649, 725, 742, 769, 1007, 1240
MflI	RGATCY	1 cut(s)	1007
MhlI	GDGCHC	3 cut(s)	118, 127, 1235
MluCI	AATT	5 cut(s)	298, 667, 709, 1217, 1270
MlyI	GAGTC	1 cut(s)	1070
MmeI	TCCRAC	1 cut(s)	843
MroI	TCCGGA	1 cut(s)	161
MseI	TTAA	5 cut(s)	183, 519, 992, 998, 1067
MspA1I	CMGCKG	2 cut(s)	233, 279
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	9 cut(s)	351, 460, 523, 649, 725, 742, 769, 1007, 1240
NlaIII	CATG	5 cut(s)	64, 458, 557, 589, 925
NlaIV	GGNNCC	4 cut(s)	58, 283, 870, 879
NmuCI	GTSAC	1 cut(s)	1221
NspI	RCATGY	1 cut(s)	458
NspV	TTCGAA	1 cut(s)	600
PagI	TCATGA	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	602
PflMI	CCANNNNNTGG	3 cut(s)	66, 303, 799
PleI	GAGTC	1 cut(s)	1069
PpsI	GAGTC	1 cut(s)	1069
Psp124BI	GAGCTC	2 cut(s)	127, 1235
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	4 cut(s)	58, 283, 870, 879
PspPI	GGNCC	1 cut(s)	249
PstI	CTGCAG	2 cut(s)	103, 372
PsuI	RGATCY	1 cut(s)	1007
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
SacI	GAGCTC	2 cut(s)	127, 1235
SacII	CCGCGG	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	5 cut(s)	183, 519, 992, 998, 1067
Sau3AI	GATC	9 cut(s)	351, 460, 523, 649, 725, 742, 769, 1007, 1240
Sau96I	GGNCC	1 cut(s)	249
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	1070
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	3 cut(s)	118, 127, 1235
SfaNI	GCATC	2 cut(s)	694, 824
SfcI	CTRYAG	2 cut(s)	99, 368
Sfr303I	CCGCGG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	600
SgrBI	CCGCGG	1 cut(s)	280
Sse9I	AATT	5 cut(s)	298, 667, 709, 1217, 1270
SsiI	CCGC	5 cut(s)	148, 231, 277, 279, 699
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	2 cut(s)	127, 1235
StyD4I	CCNGG	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	695
TaqI	TCGA	3 cut(s)	127, 292, 600
TasI	AATT	5 cut(s)	298, 667, 709, 1217, 1270
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	5 cut(s)	183, 519, 992, 998, 1067
Tru9I	TTAA	5 cut(s)	183, 519, 992, 998, 1067
TscAI	CASTG	4 cut(s)	55, 514, 700, 879
TseFI	GTSAC	1 cut(s)	1221
Tsp45I	GTSAC	1 cut(s)	1221
TspDTI	ATGAA	4 cut(s)	938, 947, 954, 1002
TspRI	CASTG	4 cut(s)	55, 514, 700, 879
Van91I	CCANNNNNTGG	3 cut(s)	66, 303, 799
XapI	RAATTY	1 cut(s)	709
XceI	RCATGY	1 cut(s)	458
XspI	CTAG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.