Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016905

Physical Location & Seq

Genomic Coordinates Forward (+)

6380504 .. 6382039

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCAAGGAAGAGAAAAGATAATGGAGTGGAAGAGACCAAAAGTTGCATTGAGGGAACCATAGCTTGGGATGAGATGGTGAAGGAAGCCTCAGCCGCTGCAGCACTCGGAGGAGCAGCAAGAAGAGCTCGAAAGCGTTTTGTTGGTGTTCGCCAAAGACCCTCCGGAAGATGGGTGGCAGAGATTAAGGACACAATTCAGAAGATAAGGGTGTGGTTGGGGACATTTGACACAGCTGAGGAAGCAGCCAGGGCCTATGATGAGGCTGCTTGCTTGCTCCGCGGTGCCAATACTAGAACAAATTTCTGGCCTTGCTCCCCATCACCATCTTCAACTCCAGCACTTCCCTCAAAGATCACAAACCTTCTTCTCCAGAGGCTCAAAGCAAGGAACAACAACACCTCTTGTTCTGCTCCATCTGCTGCTCCTTTGCCTGTTAACCACCAACAAAAGCAGTATCAGGAAGAAGCTGCAGCAGAGTTCTCGGAAAACCAATACACTGATTTCCTTAATGATCCAGAAGATTACATCACAAGCAACAATGACAACATCCCTGAGATTAGTGCAAGTAGCATCGACTACATGACATCGAGTTTTGAGTCCTGCTTGACTGAAAAGGAAGAGTACTCCACTGCAAGAGAAGCTGAACAACAAATGGACCATGGGAATTTGAGTGAAGTGGCAGAGATTACTTATAGCGGCGGGGATGCAAATTTTGTAGGTGGATCAGAGGAAGATGCGGAAGAAGAAGAAGTGAATGGTCAAGTGGGTGCCATAGACTTCCAATTTTTGGATGATATTGGATCATCAGACTACTACTCTGCTTCTCCTTTCGAGATTGCTGAAGAGATAGAAGAGGCAGTGGAGCCGGAGACCTATGCAGATGAGCCTTCTATGCTAAGAGCAGCCATGAAGAGAATGAAATATGAGAGGAAATTCTCTGCTTCTCTCTATGCCTTCAATGGCATACCCGAATGCTTAAAGTTAAAGATTGGATCTTCAACAACAGGAAACACGAGAATGAGGGGAATATCTGACCTGCAGAGGGCCTGCAGTAATAAGAACAAAGAGGAAGCTCCAGGCAAACAAGAATATTTAGGAAACAAAGAAGAGGAGAACCAGCAGAGATCAACTGATATGGGGTCTTCTTCTTCCTCCTCTTCTTTTTCTTCTCTGAGTGCTGTGAATGGTGATGTAGAAAATACTGGTAAAGAAAGATTTCCATGCATGAATCATACAAAAGCTTCACTTAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

419

Amino Acids

46.21

Weight (kDa)

4.78

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	46 - 95	3.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47880
malus_domestica	MD09G1056000.v1.1 MD17G1053600.v1.1
prunus_persica	Prupe.3G263000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167081
rosa_laevigata	RLG00000021695
rosa_multiflora	Rmu_sc0010966.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083740
rosa_rugosa	Rorug02G0528300
rosa_samantha	Rh2AG595300 Rh2BG606300 Rh2CG577300 Rh2DG618000
rosa_wichuraiana	Rw2G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1258
Acc36I	ACCTGC	1 cut(s)	1047
AccB1I	GGYRCC	2 cut(s)	284, 770
AccB7I	CCANNNNNTGG	2 cut(s)	66, 790
AccII	CGCG	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	6 cut(s)	96, 280, 282, 699, 702, 740
AclWI	GGATC	4 cut(s)	509, 733, 811, 1003
AcsI	RAATTY	4 cut(s)	301, 667, 712, 935
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	4 cut(s)	66, 171, 790, 1045
AflII	CTTAAG	1 cut(s)	1250
AgsI	TTSAA	3 cut(s)	333, 961, 1002
AjnI	CCWGG	2 cut(s)	248, 1078
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	7 cut(s)	65, 128, 236, 470, 644, 1076, 1244
AluI	AGCT	7 cut(s)	65, 128, 236, 470, 644, 1076, 1244
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	2 cut(s)	29, 866
AlwI	GGATC	4 cut(s)	509, 733, 811, 1003
AlwNI	CAGNNNCTG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	3 cut(s)	252, 308, 1047
ApeKI	GCWGC	9 cut(s)	98, 101, 116, 245, 266, 422, 470, 473, 905
ApoI	RAATTY	4 cut(s)	301, 667, 712, 935
Asp700I	GAANNNNTTC	1 cut(s)	1218
AspS9I	GGNCC	3 cut(s)	252, 658, 1047
AsuHPI	GGTGA	3 cut(s)	91, 315, 1202
AvaII	GGWCC	1 cut(s)	658
BanI	GGYRCC	2 cut(s)	284, 770
BanII	GRGCYC	1 cut(s)	130
BauI	CACGAG	1 cut(s)	1015
BbsI	GAAGAC	1 cut(s)	1137
Bbv12I	GWGCWC	1 cut(s)	130
BbvCI	CCTCAGC	2 cut(s)	91, 237
BbvI	GCAGC	9 cut(s)	85, 113, 128, 253, 257, 409, 457, 485, 917
BccI	CCATC	5 cut(s)	70, 165, 328, 334, 424
BcgI	CGANNNNNNTGC	2 cut(s)	465, 499
BciT130I	CCWGG	2 cut(s)	250, 1080
BcoDI	GTCTC	2 cut(s)	29, 866
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	4 cut(s)	99, 471, 1040, 1051
BfrI	CTTAAG	1 cut(s)	1250
BfuAI	ACCTGC	1 cut(s)	1047
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	2 cut(s)	250, 1080
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	3 cut(s)	252, 658, 1047
BmiI	GGNNCC	4 cut(s)	58, 286, 772, 867
BmrFI	CCNGG	2 cut(s)	250, 1080
BmsI	GCATC	3 cut(s)	582, 697, 727
BpiI	GAAGAC	1 cut(s)	1137
BpmI	CTGGAG	3 cut(s)	321, 356, 1062
Bpu10I	CCTNAGC	2 cut(s)	91, 237
BsaI	GGTCTC	2 cut(s)	29, 866
BsaJI	CCNNGG	3 cut(s)	249, 280, 661
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 171, 790, 1045
Bse1I	ACTGG	1 cut(s)	1210
BseAI	TCCGGA	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	250, 1080
BseDI	CCNNGG	3 cut(s)	249, 280, 661
BseGI	GGATG	4 cut(s)	76, 549, 712, 799
BseLI	CCNNNNNNNGG	4 cut(s)	66, 171, 790, 1045
BseMII	CTCAG	4 cut(s)	105, 228, 546, 1166
BseNI	ACTGG	1 cut(s)	1210
BseRI	GAGGAG	3 cut(s)	126, 1127, 1147
BseXI	GCAGC	9 cut(s)	85, 113, 128, 253, 257, 409, 457, 485, 917
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	254, 310, 1049
BshNI	GGYRCC	2 cut(s)	284, 770
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	165, 869
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	4 cut(s)	66, 171, 790, 1045
BsmAI	GTCTC	2 cut(s)	29, 866
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	980
BsnI	GGCC	3 cut(s)	254, 310, 1049
Bso31I	GGTCTC	2 cut(s)	29, 866
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	6 cut(s)	354, 514, 725, 803, 995, 1127
Bsp19I	CCATGG	1 cut(s)	661
BspACI	CCGC	6 cut(s)	96, 280, 282, 699, 702, 740
BspANI	GGCC	3 cut(s)	254, 310, 1049
BspCNI	CTCAG	4 cut(s)	104, 229, 547, 1167
BspEI	TCCGGA	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	4 cut(s)	58, 286, 772, 867
BspMAI	CTGCAG	4 cut(s)	103, 475, 1044, 1055
BspMI	ACCTGC	1 cut(s)	1047
BspPI	GGATC	4 cut(s)	509, 733, 811, 1003
BspQI	GCTCTTC	1 cut(s)	118
BspT107I	GGYRCC	2 cut(s)	284, 770
BspTI	CTTAAG	1 cut(s)	1250
BspTNI	GGTCTC	2 cut(s)	29, 866
BsrI	ACTGG	1 cut(s)	1210
BssECI	CCNNGG	3 cut(s)	249, 280, 661
BssMI	GATC	6 cut(s)	354, 514, 725, 803, 995, 1127
BssSI	CACGAG	1 cut(s)	1015
BssT1I	CCWWGG	1 cut(s)	661
Bst2BI	CACGAG	1 cut(s)	1015
Bst2UI	CCWGG	2 cut(s)	250, 1080
Bst6I	CTCTTC	9 cut(s)	5, 27, 118, 615, 840, 849, 908, 1104, 1165
BstAFI	CTTAAG	1 cut(s)	1250
BstC8I	GCNNGC	3 cut(s)	271, 275, 1051
BstDEI	CTNAG	5 cut(s)	91, 237, 555, 899, 1175
BstDSI	CCRYGG	2 cut(s)	280, 661
BstF5I	GGATG	4 cut(s)	76, 549, 712, 799
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	6 cut(s)	357, 517, 728, 806, 998, 1130
BstMAI	GTCTC	2 cut(s)	29, 866
BstMBI	GATC	6 cut(s)	354, 514, 725, 803, 995, 1127
BstMWI	GCNNNNNNNGC	9 cut(s)	95, 101, 125, 242, 251, 279, 419, 641, 895
BstNI	CCWGG	2 cut(s)	250, 1080
BstSCI	CCNGG	2 cut(s)	248, 1078
BstSFI	CTRYAG	4 cut(s)	99, 471, 1040, 1051
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	9 cut(s)	85, 113, 128, 253, 257, 409, 457, 485, 917
BstV2I	GAAGAC	1 cut(s)	1137
BstX2I	RGATCY	1 cut(s)	995
BstYI	RGATCY	1 cut(s)	995
BsuRI	GGCC	3 cut(s)	254, 310, 1049
BtgI	CCRYGG	2 cut(s)	280, 661
BtsCI	GGATG	4 cut(s)	76, 549, 712, 799
BtsI	GCAGTG	2 cut(s)	630, 867
BtsIMutI	CAGTG	3 cut(s)	498, 630, 867
BveI	ACCTGC	1 cut(s)	1047
Cac8I	GCNNGC	3 cut(s)	271, 275, 1051
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	252, 658, 1047
Cfr42I	CCGCGG	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	5 cut(s)	583, 662, 910, 1224, 1228
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	5 cut(s)	91, 237, 555, 899, 1175
DpnI	GATC	6 cut(s)	356, 516, 727, 805, 997, 1129
DpnII	GATC	6 cut(s)	354, 514, 725, 803, 995, 1127
Eam1104I	CTCTTC	9 cut(s)	5, 27, 118, 615, 840, 849, 908, 1104, 1165
EarI	CTCTTC	9 cut(s)	5, 27, 118, 615, 840, 849, 908, 1104, 1165
Ecl136II	GAGCTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	2 cut(s)	29, 866
Eco47I	GGWCC	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	864
EcoICRI	GAGCTC	1 cut(s)	128
EcoO109I	RGGNCCY	2 cut(s)	252, 1047
EcoRII	CCWGG	2 cut(s)	248, 1078
EcoT14I	CCWWGG	1 cut(s)	661
EcoT22I	ATGCAT	1 cut(s)	1229
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	5 cut(s)	586, 665, 913, 1227, 1231
FalI	AAGNNNNNCTT	1 cut(s)	1233
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	5 cut(s)	582, 661, 909, 1223, 1227
FauI	CCCGC	1 cut(s)	695
FokI	GGATG	4 cut(s)	83, 536, 719, 806
FriOI	GRGCYC	1 cut(s)	130
FspBI	CTAG	1 cut(s)	294
GsuI	CTGGAG	3 cut(s)	321, 356, 1062
HaeIII	GGCC	3 cut(s)	254, 310, 1049
HapII	CCGG	2 cut(s)	165, 869
Hin1II	CATG	5 cut(s)	586, 665, 913, 1227, 1231
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	1242
HinfI	GANTC	2 cut(s)	599, 1231
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	165, 869
HphI	GGTGA	3 cut(s)	91, 315, 1202
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	7 cut(s)	110, 201, 487, 730, 811, 1036, 1176
Hpy188III	TCNNGA	5 cut(s)	165, 373, 461, 518, 835
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	4 cut(s)	76, 374, 900, 967
HpyF10VI	GCNNNNNNNGC	9 cut(s)	95, 101, 125, 242, 251, 279, 419, 641, 895
HpyF3I	CTNAG	5 cut(s)	91, 237, 555, 899, 1175
Hsp92II	CATG	5 cut(s)	586, 665, 913, 1227, 1231
Kpn2I	TCCGGA	1 cut(s)	164
KspAI	GTTAAC	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	354, 514, 725, 803, 995, 1127
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	7 cut(s)	113, 282, 320, 418, 430, 865, 1081
Lsp1109I	GCAGC	9 cut(s)	85, 113, 128, 253, 257, 409, 457, 485, 917
LweI	GCATC	3 cut(s)	582, 697, 727
MaeI	CTAG	1 cut(s)	294
MalI	GATC	6 cut(s)	356, 516, 727, 805, 997, 1129
MboI	GATC	6 cut(s)	354, 514, 725, 803, 995, 1127
MflI	RGATCY	1 cut(s)	995
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	6 cut(s)	195, 301, 667, 712, 785, 935
MlyI	GAGTC	1 cut(s)	608
Mph1103I	ATGCAT	1 cut(s)	1229
MroI	TCCGGA	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	1218
MseI	TTAA	6 cut(s)	186, 438, 510, 980, 986, 1251
MslI	CAYNNNNRTG	1 cut(s)	1019
MspA1I	CMGCKG	3 cut(s)	98, 236, 282
MspCI	CTTAAG	1 cut(s)	1250
MspI	CCGG	2 cut(s)	165, 869
MspR9I	CCNGG	2 cut(s)	250, 1080
Mva1269I	GAATGC	1 cut(s)	980
MvaI	CCWGG	2 cut(s)	250, 1080
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	9 cut(s)	95, 101, 125, 242, 251, 279, 419, 641, 895
NcoI	CCATGG	1 cut(s)	661
NdeII	GATC	6 cut(s)	354, 514, 725, 803, 995, 1127
NlaIII	CATG	5 cut(s)	586, 665, 913, 1227, 1231
NlaIV	GGNNCC	4 cut(s)	58, 286, 772, 867
NsiI	ATGCAT	1 cut(s)	1229
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	1218
PfeI	GAWTC	1 cut(s)	1231
PflMI	CCANNNNNTGG	2 cut(s)	66, 790
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
PsiI	TTATAA	1 cut(s)	1258
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	248, 1078
PspGI	CCWGG	2 cut(s)	248, 1078
PspN4I	GGNNCC	4 cut(s)	58, 286, 772, 867
PspPI	GGNCC	3 cut(s)	252, 658, 1047
PstI	CTGCAG	4 cut(s)	103, 475, 1044, 1055
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	995
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	1019
SacI	GAGCTC	1 cut(s)	130
SacII	CCGCGG	1 cut(s)	283
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	6 cut(s)	186, 438, 510, 980, 986, 1251
Sau3AI	GATC	6 cut(s)	354, 514, 725, 803, 995, 1127
Sau96I	GGNCC	3 cut(s)	252, 658, 1047
ScaI	AGTACT	1 cut(s)	626
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	250, 1080
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	3 cut(s)	582, 697, 727
SfcI	CTRYAG	4 cut(s)	99, 471, 1040, 1051
Sfr303I	CCGCGG	1 cut(s)	283
SgrBI	CCGCGG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	1019
SmlI	CTYRAG	1 cut(s)	1250
SmoI	CTYRAG	1 cut(s)	1250
Sse9I	AATT	6 cut(s)	195, 301, 667, 712, 785, 935
SsiI	CCGC	6 cut(s)	96, 280, 282, 699, 702, 740
SspI	AATATT	1 cut(s)	1094
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	2 cut(s)	248, 1078
StyI	CCWWGG	1 cut(s)	661
TaqI	TCGA	4 cut(s)	130, 576, 590, 834
TasI	AATT	6 cut(s)	195, 301, 667, 712, 785, 935
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	2 cut(s)	98, 702
TfiI	GAWTC	1 cut(s)	1231
Tru1I	TTAA	6 cut(s)	186, 438, 510, 980, 986, 1251
Tru9I	TTAA	6 cut(s)	186, 438, 510, 980, 986, 1251
TscAI	CASTG	3 cut(s)	505, 637, 867
TseI	GCWGC	9 cut(s)	98, 101, 116, 245, 266, 422, 470, 473, 905
TspDTI	ATGAA	3 cut(s)	926, 935, 1244
TspRI	CASTG	3 cut(s)	505, 637, 867
Van91I	CCANNNNNTGG	2 cut(s)	66, 790
Vha464I	CTTAAG	1 cut(s)	1250
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	4 cut(s)	301, 667, 712, 935
XmnI	GAANNNNTTC	1 cut(s)	1218
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	626
Zsp2I	ATGCAT	1 cut(s)	1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.