Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016905

Physical Location & Seq

Genomic Coordinates Reverse (-)

81740735 .. 81742293

Gene Structure 1559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCAAGGAAGAGAAAAGTTAATGAAGGAGTGGAAGAGACCAAAAGTTGCATTGAGGGAACCATGGCTTGGGATGAGATGGTGAAGGAAGCCTCAGCTGCTGCAGCACTCGGAGGAGCAGCAAGAAGAGCTCGAAAGCGTTTTGTTGGTGTTCGCCAAAGACCCTCCGGAAGATGGGTGGCAGAGATTAAGGACACAATTCAGAAGATAAGGGTGTGGTTGGGGACATTTGACACAGCTGAGGAAGCAGCCAGGGCCTATGATGAGGCTGCTTGCTTGCTCCGCGGTGCCAATACTAGAACAAATTTCTGGCCTTGCTCCCCATCACCATCTTCAACTCCAGCACTTCCCTCAAAGATCACAAACCTTCTTCTCCAGAGGCTCAAAGCAAGGAACAACAACACCTCTTGTTCTGCTCCATCTGCTGCTCCTTTGCCTGTTAACCACCAACAAAAGCAGTATCAGGAAGAAGCTGCAGCAGAGTTCTCGGAAAACCAATACACTGATTTCCTTAATGATCCAGAAGATTACATCACAAGCAACAATGACAACATCCCTGAGATTAGTGCAAGTAGCATCGACTACATGACATCGAGTTTTGAGTCCTGCTTGACTGAAAAGGAAGAGTACACCACTGCAAGAGAAGCTGAACAACAAATGGACTATGGGAATTTGAGTGAAGTGGCAGAGATTACTTATAGCGGCGGGGATGCAAATTTTGTTGGTGGATCAGAGGAAGATGCGGAAGAAGAAGAAGTGAATGGTCAAGTGGGTGCCATAGACTTCCAATTTGTGGATGATATTGGATCATCAGACTACTACTCTCCTTCTCCTTTCGAGATTGCTGAAGAGATAGAAGAGGCAGTGGAGCCGGAGACCTATGCAGATGAGCCTTCTATGCTAAGAGCAGCCATGAAGAGAATGAAATATGAGAGGAAATTCTCTGCTTCTCTCTATGCCTTCAATGGCATACCCGAATGCTTAAAGTTAAAGATTGGATCTTCGACAACAGGAAACACGAGAATGAGGGGAATATCTGACCTGCAGAGGGCCTGCAGTAATAAGAACAAAGAGGAAGCTCCAGCCAAACAAGAATATGAAGGAAAGAAAGAAGAGGAGAACCAGCAGAGATCAACTGATATGGGGTCTTCTTCTTCCTCTTCTTCTTTTTCTTCTCTGAGTGCTGTGAATGGTGATGGTGAGTTGTCACTTTGGAGCTCACTTGATCTTCAGCCTATCTGCTTTTTGTCTACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

419

Amino Acids

46.26

Weight (kDa)

4.62

Isoelectric Point (pI)

64.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	47 - 96	3.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0016905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47880
malus_domestica	MD09G1056000.v1.1 MD17G1053600.v1.1
prunus_persica	Prupe.3G263000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167081
rosa_laevigata	RLG00000021695
rosa_multiflora	Rmu_sc0010966.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083740
rosa_rugosa	Rorug02G0528300
rosa_samantha	Rh2AG595300 Rh2BG606300 Rh2CG577300 Rh2DG618000
rosa_wichuraiana	Rw2G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1050
AccB1I	GGYRCC	2 cut(s)	287, 773
AccB7I	CCANNNNNTGG	2 cut(s)	69, 793
AccI	GTMKAC	1 cut(s)	1250
AccII	CGCG	1 cut(s)	285
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	5 cut(s)	283, 285, 702, 705, 743
AclWI	GGATC	4 cut(s)	512, 736, 814, 1006
AcsI	RAATTY	4 cut(s)	304, 670, 715, 938
AcuI	CTGAAG	2 cut(s)	867, 1214
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	4 cut(s)	69, 174, 793, 1048
AgsI	TTSAA	2 cut(s)	336, 964
AjnI	CCWGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	7 cut(s)	98, 131, 239, 473, 647, 1079, 1218
AluI	AGCT	7 cut(s)	98, 131, 239, 473, 647, 1079, 1218
Alw21I	GWGCWC	2 cut(s)	133, 1220
Alw26I	GTCTC	2 cut(s)	32, 869
AlwI	GGATC	4 cut(s)	512, 736, 814, 1006
AlwNI	CAGNNNCTG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	3 cut(s)	255, 311, 1050
ApoI	RAATTY	4 cut(s)	304, 670, 715, 938
ArsI	GACNNNNNNTTYG	2 cut(s)	773, 805
AspS9I	GGNCC	2 cut(s)	255, 1050
AsuHPI	GGTGA	4 cut(s)	94, 318, 1205, 1211
BanI	GGYRCC	2 cut(s)	287, 773
BanII	GRGCYC	2 cut(s)	133, 1220
BauI	CACGAG	1 cut(s)	1018
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	2 cut(s)	133, 1220
BbvCI	CCTCAGC	2 cut(s)	94, 240
BccI	CCATC	6 cut(s)	73, 168, 331, 337, 427, 1190
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	32, 869
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	4 cut(s)	102, 474, 1043, 1054
BfuAI	ACCTGC	1 cut(s)	1050
Bme1390I	CCNGG	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	255, 1050
BmiI	GGNNCC	4 cut(s)	61, 289, 775, 870
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	3 cut(s)	585, 700, 730
BpiI	GAAGAC	1 cut(s)	1140
BpmI	CTGGAG	3 cut(s)	324, 359, 1065
Bpu10I	CCTNAGC	2 cut(s)	94, 240
BsaI	GGTCTC	2 cut(s)	32, 869
BsaJI	CCNNGG	3 cut(s)	63, 252, 283
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 174, 793, 1048
BseAI	TCCGGA	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	3 cut(s)	63, 252, 283
BseGI	GGATG	4 cut(s)	79, 552, 715, 802
BseLI	CCNNNNNNNGG	4 cut(s)	69, 174, 793, 1048
BseMII	CTCAG	4 cut(s)	108, 231, 549, 1169
BseRI	GAGGAG	2 cut(s)	129, 1130
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	257, 313, 1052
BshNI	GGYRCC	2 cut(s)	287, 773
BsiHKAI	GWGCWC	2 cut(s)	133, 1220
BsiSI	CCGG	2 cut(s)	168, 872
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	4 cut(s)	69, 174, 793, 1048
BsmAI	GTCTC	2 cut(s)	32, 869
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	983
BsnI	GGCC	3 cut(s)	257, 313, 1052
Bso31I	GGTCTC	2 cut(s)	32, 869
Bsp1286I	GDGCHC	2 cut(s)	133, 1220
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	7 cut(s)	357, 517, 728, 806, 998, 1130, 1225
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	5 cut(s)	283, 285, 702, 705, 743
BspANI	GGCC	3 cut(s)	257, 313, 1052
BspCNI	CTCAG	4 cut(s)	107, 232, 550, 1170
BspEI	TCCGGA	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	4 cut(s)	61, 289, 775, 870
BspMAI	CTGCAG	4 cut(s)	106, 478, 1047, 1058
BspMI	ACCTGC	1 cut(s)	1050
BspPI	GGATC	4 cut(s)	512, 736, 814, 1006
BspQI	GCTCTTC	1 cut(s)	121
BspT107I	GGYRCC	2 cut(s)	287, 773
BspTNI	GGTCTC	2 cut(s)	32, 869
BssECI	CCNNGG	3 cut(s)	63, 252, 283
BssMI	GATC	7 cut(s)	357, 517, 728, 806, 998, 1130, 1225
BssSI	CACGAG	1 cut(s)	1018
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	1018
Bst2UI	CCWGG	1 cut(s)	253
Bst6I	CTCTTC	9 cut(s)	5, 30, 121, 618, 843, 852, 911, 1107, 1165
BstC8I	GCNNGC	3 cut(s)	274, 278, 1054
BstDEI	CTNAG	5 cut(s)	94, 240, 558, 902, 1178
BstDSI	CCRYGG	2 cut(s)	63, 283
BstF5I	GGATG	4 cut(s)	79, 552, 715, 802
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	7 cut(s)	360, 520, 731, 809, 1001, 1133, 1228
BstMAI	GTCTC	2 cut(s)	32, 869
BstMBI	GATC	7 cut(s)	357, 517, 728, 806, 998, 1130, 1225
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 104, 128, 245, 254, 282, 422, 644, 898
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	4 cut(s)	102, 474, 1043, 1054
BstUI	CGCG	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	1140
BstX2I	RGATCY	1 cut(s)	998
BstYI	RGATCY	1 cut(s)	998
BsuRI	GGCC	3 cut(s)	257, 313, 1052
BtgI	CCRYGG	2 cut(s)	63, 283
BtsCI	GGATG	4 cut(s)	79, 552, 715, 802
BtsI	GCAGTG	2 cut(s)	633, 870
BtsIMutI	CAGTG	3 cut(s)	501, 633, 870
BveI	ACCTGC	1 cut(s)	1050
Cac8I	GCNNGC	3 cut(s)	274, 278, 1054
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	255, 1050
Cfr42I	CCGCGG	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	3 cut(s)	64, 586, 913
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	5 cut(s)	94, 240, 558, 902, 1178
DpnI	GATC	7 cut(s)	359, 519, 730, 808, 1000, 1132, 1227
DpnII	GATC	7 cut(s)	357, 517, 728, 806, 998, 1130, 1225
Eam1104I	CTCTTC	9 cut(s)	5, 30, 121, 618, 843, 852, 911, 1107, 1165
EarI	CTCTTC	9 cut(s)	5, 30, 121, 618, 843, 852, 911, 1107, 1165
Ecl136II	GAGCTC	2 cut(s)	131, 1218
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	133, 1220
Eco31I	GGTCTC	2 cut(s)	32, 869
Eco53kI	GAGCTC	2 cut(s)	131, 1218
Eco57I	CTGAAG	2 cut(s)	867, 1214
EcoICRI	GAGCTC	2 cut(s)	131, 1218
EcoO109I	RGGNCCY	2 cut(s)	255, 1050
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	2 cut(s)	133, 1220
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	67, 589, 916
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	3 cut(s)	63, 585, 912
FauI	CCCGC	1 cut(s)	698
FblI	GTMKAC	1 cut(s)	1250
FokI	GGATG	4 cut(s)	86, 539, 722, 809
FriOI	GRGCYC	2 cut(s)	133, 1220
FspBI	CTAG	1 cut(s)	297
GsuI	CTGGAG	3 cut(s)	324, 359, 1065
HaeIII	GGCC	3 cut(s)	257, 313, 1052
HapII	CCGG	2 cut(s)	168, 872
Hin1II	CATG	3 cut(s)	67, 589, 916
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	602
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	168, 872
HphI	GGTGA	4 cut(s)	94, 318, 1205, 1211
Hpy166II	GTNNAC	3 cut(s)	442, 630, 1251
Hpy188I	TCNGA	7 cut(s)	113, 204, 490, 733, 814, 1039, 1179
Hpy188III	TCNNGA	5 cut(s)	168, 376, 464, 521, 838
Hpy8I	GTNNAC	3 cut(s)	442, 630, 1251
HpyAV	CCTTC	7 cut(s)	20, 79, 377, 837, 903, 970, 1094
HpyCH4V	TGCA	9 cut(s)	51, 104, 476, 569, 638, 713, 884, 1045, 1056
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 104, 128, 245, 254, 282, 422, 644, 898
HpyF3I	CTNAG	5 cut(s)	94, 240, 558, 902, 1178
Hsp92II	CATG	3 cut(s)	67, 589, 916
Kpn2I	TCCGGA	1 cut(s)	167
KspAI	GTTAAC	1 cut(s)	442
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	7 cut(s)	357, 517, 728, 806, 998, 1130, 1225
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	8 cut(s)	116, 285, 323, 421, 433, 868, 1084, 1215
LweI	GCATC	3 cut(s)	585, 700, 730
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	1206
MalI	GATC	7 cut(s)	359, 519, 730, 808, 1000, 1132, 1227
MboI	GATC	7 cut(s)	357, 517, 728, 806, 998, 1130, 1225
MflI	RGATCY	1 cut(s)	998
MhlI	GDGCHC	2 cut(s)	133, 1220
MluCI	AATT	7 cut(s)	198, 304, 670, 715, 788, 938, 1255
MlyI	GAGTC	1 cut(s)	611
MroI	TCCGGA	1 cut(s)	167
MseI	TTAA	6 cut(s)	21, 189, 441, 513, 983, 989
MslI	CAYNNNNRTG	1 cut(s)	1022
MspA1I	CMGCKG	3 cut(s)	98, 239, 285
MspI	CCGG	2 cut(s)	168, 872
MspR9I	CCNGG	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	983
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	9 cut(s)	98, 104, 128, 245, 254, 282, 422, 644, 898
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	7 cut(s)	357, 517, 728, 806, 998, 1130, 1225
NlaIII	CATG	3 cut(s)	67, 589, 916
NlaIV	GGNNCC	4 cut(s)	61, 289, 775, 870
NmuCI	GTSAC	1 cut(s)	1206
PciSI	GCTCTTC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	983
PflMI	CCANNNNNTGG	2 cut(s)	69, 793
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Psp124BI	GAGCTC	2 cut(s)	133, 1220
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	61, 289, 775, 870
PspPI	GGNCC	2 cut(s)	255, 1050
PstI	CTGCAG	4 cut(s)	106, 478, 1047, 1058
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	998
PvuII	CAGCTG	2 cut(s)	98, 239
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	1022
SacI	GAGCTC	2 cut(s)	133, 1220
SacII	CCGCGG	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	6 cut(s)	21, 189, 441, 513, 983, 989
Sau3AI	GATC	7 cut(s)	357, 517, 728, 806, 998, 1130, 1225
Sau96I	GGNCC	2 cut(s)	255, 1050
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	2 cut(s)	133, 1220
SfaNI	GCATC	3 cut(s)	585, 700, 730
SfcI	CTRYAG	4 cut(s)	102, 474, 1043, 1054
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	1022
Sse9I	AATT	7 cut(s)	198, 304, 670, 715, 788, 938, 1255
SsiI	CCGC	5 cut(s)	283, 285, 702, 705, 743
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	2 cut(s)	133, 1220
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	5 cut(s)	133, 579, 593, 837, 1004
TasI	AATT	7 cut(s)	198, 304, 670, 715, 788, 938, 1255
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	1 cut(s)	705
Tru1I	TTAA	6 cut(s)	21, 189, 441, 513, 983, 989
Tru9I	TTAA	6 cut(s)	21, 189, 441, 513, 983, 989
TscAI	CASTG	3 cut(s)	508, 640, 870
TseFI	GTSAC	1 cut(s)	1206
Tsp45I	GTSAC	1 cut(s)	1206
TspDTI	ATGAA	4 cut(s)	39, 929, 938, 1113
TspRI	CASTG	3 cut(s)	508, 640, 870
Van91I	CCANNNNNTGG	2 cut(s)	69, 793
XapI	RAATTY	4 cut(s)	304, 670, 715, 938
XmiI	GTMKAC	1 cut(s)	1250
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.