Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016905

Physical Location & Seq

Genomic Coordinates Forward (+)

3715627 .. 3716889

Gene Structure 1263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1056000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCAAGGAAGAGAAAAGTTAGTGAGGGAGTGGAAGACTACACTACTACTTCAGGTGAGGGAACCATGGCTTGGGATGAGATGGTGAAGGAAGCTTCCGCTGTCGCCGAGCTAGGTGGAGCACGTAGGGCACGAAAGCGCTTTGTTGGTGTCCGGCAAAGACCCTCCGGCAGATGGGTGGCCGAGATTAAGGACACCATTCAAAAAATTAGGGTTTGGCTAGGCACCTTTGACACAGCGGAGGAAGCAGCCAGGGCCTACGACGAAGCTGCCTGCTTGCTTCGCGGTGCCAACACCAGAACCAACTTCTGGCCTTGTTCCCAATCGCCATCTACAACTCCAGCGTTGCCCTCAAAGATCACAAACCTCCTCCTCCAGAGGTTGAAGGCAAGAAACAACGCCATCTCTTGCTCTCCTCCTCCTGCTGCTCCTCTCCCTATCAACCACCACTACGATCAAAATCTTCACGAACAAGCAACAGAAACCGATTTCTCCGAAACCCAATATACAGATTTTCTCAACGATCCCGAAGATTATTATATCACAAGCAACAACAACCAAGAAATTATCACTGATCACATCAGTGCAAGCAGCATTGACTACATGACGTCGAGCTTCGAATCATGCTTGACTGACAAGGAAACTGATCACATGGAGTACGGTAACTTGAGTGAAGTGGCGCAACAGACTTGTAGCGGCGAAGATGCAAATTTCGCAGCGGAAGGATCGGAGGCAGATGTTGATCAAGAACAAGAAGAAGAGGAGGAAGTGAACGGAGATCAAGTTGGAGTGATGGACTTCCAGTTTGTCGATGATATTGGAGCATCCAACTCGACCTACTACTCTCCGTCGCCTTTCGAGATTGCTGAGGAGATAGAGGAGCCGGTTCTGGAGGCTGAGAGCTATGCTGATGAGCCTTCGATGCTGAGAGCCGCCATGAAGAGAATGAAGTACGAGAGGAAGTTTTCGGCTTCTCTCTACGCCTTCAATGGGATTCCCGAGTGCTTGAAGCTGAGAATCGGATCGGGGAATGGGAAAGGGAGAGGGGTGTCTGAGTGTTTGAGCAACCTTCAGAGAGCGTGCAGTAACAAGAACAAAGAGGAGGAGGTTGTTACTGTAGCGGCGGCGGAACACTCACGAAATGATTCGAAACAGGAGGAGCAGGGTTCATCATCAATGGATGTTTCTCTGAGTAGTGATGGTGAATTGTCACTCTGGGGCTCACTTGATCTGCAGCCAATCTGCTTTTTGTCAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

421

Amino Acids

46.54

Weight (kDa)

4.56

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	47 - 96	3.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47880
malus_domestica	MD09G1056000.v1.1 MD17G1053600.v1.1
prunus_persica	Prupe.3G263000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167081
rosa_laevigata	RLG00000021695
rosa_multiflora	Rmu_sc0010966.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083740
rosa_rugosa	Rorug02G0528300
rosa_samantha	Rh2AG595300 Rh2BG606300 Rh2CG577300 Rh2DG618000
rosa_wichuraiana	Rw2G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	611
AccB1I	GGYRCC	2 cut(s)	224, 287
AccB7I	CCANNNNNTGG	2 cut(s)	72, 309
AccII	CGCG	1 cut(s)	285
AciI	CCGC	9 cut(s)	99, 239, 285, 696, 719, 933, 1121, 1124, 1127
AclWI	GGATC	3 cut(s)	518, 733, 1030
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	709
AcuI	CTGAAG	2 cut(s)	36, 1055
AcyI	GRCGYC	1 cut(s)	608
AfaI	GTAC	2 cut(s)	659, 953
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	4 cut(s)	72, 174, 309, 990
AgsI	TTSAA	4 cut(s)	203, 385, 988, 1009
AjnI	CCWGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AleI	CACNNNNGTG	1 cut(s)	582
AluBI	AGCT	6 cut(s)	95, 112, 269, 615, 903, 1012
AluI	AGCT	6 cut(s)	95, 112, 269, 615, 903, 1012
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	3 cut(s)	518, 733, 1030
Ama87I	CYCGRG	1 cut(s)	998
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	3 cut(s)	180, 255, 311
ApeKI	GCWGC	6 cut(s)	248, 269, 425, 591, 716, 1234
ApoI	RAATTY	1 cut(s)	709
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
Asp700I	GAANNNNTTC	1 cut(s)	1144
AspLEI	GCGC	2 cut(s)	141, 682
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	3 cut(s)	68, 97, 1214
AsuII	TTCGAA	2 cut(s)	618, 1148
AvaI	CYCGRG	1 cut(s)	998
BaeGI	GKGCMC	1 cut(s)	133
BanI	GGYRCC	2 cut(s)	224, 287
BanII	GRGCYC	1 cut(s)	1223
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	867
BbvI	GCAGC	6 cut(s)	256, 260, 412, 603, 728, 1246
BccI	CCATC	6 cut(s)	76, 168, 337, 410, 787, 1193
BcgI	CGANNNNNNTGC	4 cut(s)	251, 285, 813, 847
BciT130I	CCWGG	1 cut(s)	253
BclI	TGATCA	3 cut(s)	574, 646, 742
BfaI	CTAG	2 cut(s)	113, 221
BfmI	CTRYAG	2 cut(s)	1116, 1232
BfoI	RGCGCY	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	998
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	4 cut(s)	64, 226, 289, 882
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	3 cut(s)	694, 833, 912
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	3 cut(s)	324, 359, 911
Bpu10I	CCTNAGC	1 cut(s)	867
Bpu14I	TTCGAA	2 cut(s)	618, 1148
BpuEI	CTTGAG	1 cut(s)	688
BsaAI	YACGTR	1 cut(s)	125
BsaBI	GATNNNNATC	2 cut(s)	459, 741
BsaHI	GRCGYC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	66, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 174, 309, 990
Bse118I	RCCGGY	1 cut(s)	883
Bse1I	ACTGG	1 cut(s)	802
Bse8I	GATNNNNATC	2 cut(s)	459, 741
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	66, 252
BseGI	GGATG	3 cut(s)	82, 824, 1186
BseJI	GATNNNNATC	2 cut(s)	459, 741
BseLI	CCNNNNNNNGG	4 cut(s)	72, 174, 309, 990
BseMII	CTCAG	6 cut(s)	858, 888, 917, 1004, 1044, 1181
BseNI	ACTGG	1 cut(s)	802
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	6 cut(s)	256, 260, 412, 603, 728, 1246
BsgI	GTGCAG	1 cut(s)	1102
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	182, 257, 313
BshNI	GGYRCC	2 cut(s)	224, 287
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	998
BsiSI	CCGG	3 cut(s)	154, 168, 884
BslI	CCNNNNNNNGG	4 cut(s)	72, 174, 309, 990
BsnI	GGCC	3 cut(s)	182, 257, 313
BsoBI	CYCGRG	1 cut(s)	998
Bsp119I	TTCGAA	2 cut(s)	618, 1148
Bsp1286I	GDGCHC	3 cut(s)	124, 133, 1223
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	9 cut(s)	99, 239, 285, 696, 719, 933, 1121, 1124, 1127
BspANI	GGCC	3 cut(s)	182, 257, 313
BspCNI	CTCAG	6 cut(s)	859, 889, 918, 1005, 1045, 1182
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	4 cut(s)	64, 226, 289, 882
BspMAI	CTGCAG	1 cut(s)	1236
BspPI	GGATC	3 cut(s)	518, 733, 1030
BspT104I	TTCGAA	2 cut(s)	618, 1148
BspT107I	GGYRCC	2 cut(s)	224, 287
BsrFI	RCCGGY	1 cut(s)	883
BsrI	ACTGG	1 cut(s)	802
BssAI	RCCGGY	1 cut(s)	883
BssECI	CCNNGG	2 cut(s)	66, 252
BssNI	GRCGYC	1 cut(s)	608
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	662, 1117
Bst6I	CTCTTC	3 cut(s)	5, 753, 935
BstACI	GRCGYC	1 cut(s)	608
BstBAI	YACGTR	1 cut(s)	125
BstBI	TTCGAA	2 cut(s)	618, 1148
BstC8I	GCNNGC	4 cut(s)	274, 278, 589, 1081
BstDEI	CTNAG	7 cut(s)	867, 897, 926, 1013, 1053, 1190, 1257
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	82, 824, 1186
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	141, 682
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 245, 254, 282, 713, 922
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	2 cut(s)	1116, 1232
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	6 cut(s)	256, 260, 412, 603, 728, 1246
BstV2I	GAAGAC	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	182, 257, 313
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	82, 824, 1186
BtsIMutI	CAGTG	2 cut(s)	570, 589
Cac8I	GCNNGC	4 cut(s)	274, 278, 589, 1081
CfoI	GCGC	2 cut(s)	141, 682
Cfr10I	RCCGGY	1 cut(s)	883
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	658, 952
CviAII	CATG	5 cut(s)	67, 604, 624, 652, 937
CviQI	GTAC	2 cut(s)	658, 952
DdeI	CTNAG	7 cut(s)	867, 897, 926, 1013, 1053, 1190, 1257
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	3 cut(s)	5, 753, 935
EarI	CTCTTC	3 cut(s)	5, 753, 935
EciI	GGCGGA	1 cut(s)	1142
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	1223
Eco47III	AGCGCT	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	36, 1055
Eco88I	CYCGRG	1 cut(s)	998
EcoO109I	RGGNCCY	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	1223
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	5 cut(s)	70, 607, 627, 655, 940
FaiI	YATR	8 cut(s)	68, 507, 540, 605, 625, 653, 906, 938
FatI	CATG	5 cut(s)	66, 603, 623, 651, 936
FbaI	TGATCA	3 cut(s)	574, 646, 742
FokI	GGATG	3 cut(s)	89, 811, 1193
FriOI	GRGCYC	1 cut(s)	1223
FspBI	CTAG	2 cut(s)	113, 221
GlaI	GCGC	2 cut(s)	140, 681
GsuI	CTGGAG	3 cut(s)	324, 359, 911
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	182, 257, 313
HapII	CCGG	3 cut(s)	154, 168, 884
HhaI	GCGC	2 cut(s)	141, 682
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	5 cut(s)	70, 607, 627, 655, 940
Hin6I	GCGC	2 cut(s)	139, 680
HinP1I	GCGC	2 cut(s)	139, 680
HincII	GTYRAC	1 cut(s)	1254
HindII	GTYRAC	1 cut(s)	1254
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	4 cut(s)	620, 994, 1017, 1145
HpaII	CCGG	3 cut(s)	154, 168, 884
HphI	GGTGA	3 cut(s)	68, 97, 1214
Hpy166II	GTNNAC	2 cut(s)	772, 1254
Hpy188I	TCNGA	6 cut(s)	496, 730, 1022, 1054, 1074, 1191
Hpy188III	TCNNGA	8 cut(s)	376, 467, 527, 746, 859, 890, 998, 1137
Hpy8I	GTNNAC	2 cut(s)	772, 1254
Hpy99I	CGWCG	3 cut(s)	266, 613, 853
HpyAV	CCTTC	6 cut(s)	82, 379, 716, 927, 994, 1079
HpyCH4III	ACNGT	2 cut(s)	662, 1117
HpyCH4IV	ACGT	2 cut(s)	124, 608
HpyCH4V	TGCA	4 cut(s)	587, 707, 1083, 1234
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 245, 254, 282, 713, 922
HpyF3I	CTNAG	7 cut(s)	867, 897, 926, 1013, 1053, 1190, 1257
HpySE526I	ACGT	2 cut(s)	124, 608
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	5 cut(s)	70, 607, 627, 655, 940
HspAI	GCGC	2 cut(s)	139, 680
Ksp22I	TGATCA	3 cut(s)	574, 646, 742
LmnI	GCTCC	5 cut(s)	119, 433, 821, 880, 1159
Lsp1109I	GCAGC	6 cut(s)	256, 260, 412, 603, 728, 1246
LweI	GCATC	3 cut(s)	694, 833, 912
MaeI	CTAG	2 cut(s)	113, 221
MaeII	ACGT	2 cut(s)	124, 608
MaeIII	GTNAC	4 cut(s)	662, 1085, 1111, 1209
MboII	GAAGA	8 cut(s)	22, 47, 455, 542, 713, 767, 770, 952
MhlI	GDGCHC	3 cut(s)	124, 133, 1223
MluCI	AATT	4 cut(s)	207, 564, 709, 1205
MmeI	TCCRAC	2 cut(s)	766, 852
MroXI	GAANNNNTTC	1 cut(s)	1144
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	3 cut(s)	101, 239, 719
MspI	CCGG	3 cut(s)	154, 168, 884
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	6 cut(s)	128, 245, 254, 282, 713, 922
NcoI	CCATGG	1 cut(s)	66
NlaIII	CATG	5 cut(s)	70, 607, 627, 655, 940
NlaIV	GGNNCC	4 cut(s)	64, 226, 289, 882
NmeAIII	GCCGAG	2 cut(s)	133, 208
NmuCI	GTSAC	1 cut(s)	1209
NspV	TTCGAA	2 cut(s)	618, 1148
OliI	CACNNNNGTG	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	1144
PfeI	GAWTC	4 cut(s)	620, 994, 1017, 1145
PflMI	CCANNNNNTGG	2 cut(s)	72, 309
Ppu21I	YACGTR	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	64, 226, 289, 882
PspPI	GGNCC	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	1236
RsaI	GTAC	2 cut(s)	659, 953
RsaNI	GTAC	2 cut(s)	658, 952
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	3 cut(s)	124, 133, 1223
SfaNI	GCATC	3 cut(s)	694, 833, 912
SfcI	CTRYAG	2 cut(s)	1116, 1232
SfuI	TTCGAA	2 cut(s)	618, 1148
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
Sse9I	AATT	4 cut(s)	207, 564, 709, 1205
SsiI	CCGC	9 cut(s)	99, 239, 285, 696, 719, 933, 1121, 1124, 1127
SspMI	CTAG	2 cut(s)	113, 221
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	662, 1117
TaiI	ACGT	2 cut(s)	127, 611
TaqI	TCGA	7 cut(s)	611, 618, 810, 833, 858, 920, 1148
TasI	AATT	4 cut(s)	207, 564, 709, 1205
TauI	GCSGC	4 cut(s)	699, 935, 1124, 1127
TfiI	GAWTC	4 cut(s)	620, 994, 1017, 1145
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	577, 589
TseFI	GTSAC	1 cut(s)	1209
TseI	GCWGC	6 cut(s)	248, 269, 425, 591, 716, 1234
Tsp45I	GTSAC	1 cut(s)	1209
TspDTI	ATGAA	3 cut(s)	953, 962, 1158
TspGWI	ACGGA	2 cut(s)	789, 837
TspRI	CASTG	2 cut(s)	577, 589
Van91I	CCANNNNNTGG	2 cut(s)	72, 309
XapI	RAATTY	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	1144
XspI	CTAG	2 cut(s)	113, 221
ZraI	GACGTC	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.