Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0018066

Physical Location & Seq

Genomic Coordinates Forward (+)

36637462 .. 36638846

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCGTCCATGGTGGCGACCTGCTTCACACTCCAACCGACTCTTTATCCTTGTCTCGCTTTCACCACTTCACTCTTCCCTAACCCTAGACCTCTCAATACCTTTCCTCATCCAATCTCGGCATGCTTTTCTGCAAAGCTTCAAGAATCACCTAGGGTTTCGTTCCCCTTTTTCGGCGGCGCTGATTTCAAGGGTGAAAGGTACCGGTCACCGTTTTGGAGGCCACGAGCATTCAACGACTACGTCGAATCCATTCGGTCATTCATGTTTGGCGACGGCGATCCAAATAAGGAAACGAACGAGGAGAGATGGAAGTGGATTGTGCAGTACATAACCTGGAAAGGAGGTGTTGTTGCAGCTGAAGAGCTTGCTCCATATCTCAACCCTTTGGAAACTAATGGCCAAAACGACATCGACGACGAAACGTTCATGCTTCCGGTTCTGACGAGGTACGAGGGCCATCCTGTCATTGATGAAGAAAACGGTAACGTTCTATACCGGTTTATATCTCTGCAACCCACACCCGAGGAATTGAGTGATCCTAACTTTGACAAAAACGGAAAGCTACTACTTAGGCAAAAGATGTTCATGGAGCATAAGTGGCGATTCAGCAAGACTAGCAATTTGGAGAAGGCAGTGATTTTAGGGTTTGTTGGACTATGTTGGAAAGGGATTCATATGCTTGCAAATGCTTTGCTTCGTGAAGCTCCAATTGCACCGTTTGGTTATGTTAAGTTTTTCTCTGCCATGCTTCCTGTACTTCAGGCTTGTGTTGTTTCCGTCACCGCTATTCCTTCCTTGCGATTCGTTTTGTTTTGCGTGGTCTTCCTTAAGAGAAATGCTGATATTAAGAAACGAAATCTAGCAAGACAGCGATGTGCTCGGGATCTTGAGTCACCGGATCTAGCACTGAGAAGAAAGCTCGAAACTGCTAGGGACATGGCCAAAAGGTTGACAATAGTCATGACTGCGGGGCAGGAAGATGTGCCTGTAAATGTCTATGGTGCTAATAGGAGTACTAGCACTAAGAGCAGCAGGGATTTGGTGGAAGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

40.13

Weight (kDa)

8.75

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018066)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48690
rosa_chinensis	RchiOBHm_Chr2g0168601
rosa_laevigata	RLG00000021790
rosa_multiflora	Rmu_sc0002416.1_g000011
rosa_roxburghii	Rroxscaffold_2G00082840
rosa_rugosa	Rorug02G0534200
rosa_samantha	Rh2AG604700 Rh2BG617700 Rh2CG585900 Rh2DG628300
rosa_wichuraiana	Rw2G050120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	201
AciI	CCGC	3 cut(s)	177, 786, 971
AclI	AACGTT	2 cut(s)	425, 489
AclWI	GGATC	4 cut(s)	275, 533, 894, 909
AcoI	YGGCCR	2 cut(s)	400, 942
AcuI	CTGAAG	2 cut(s)	381, 746
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	203, 329, 452, 759, 1018
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflII	CTTAAG	1 cut(s)	830
AgeI	ACCGGT	2 cut(s)	204, 498
AgsI	TTSAA	3 cut(s)	143, 190, 235
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	6 cut(s)	139, 359, 367, 565, 707, 922
AluI	AGCT	6 cut(s)	139, 359, 367, 565, 707, 922
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	4 cut(s)	275, 533, 894, 909
Ama87I	CYCGRG	2 cut(s)	524, 882
AoxI	GGCC	4 cut(s)	221, 400, 457, 942
ApeKI	GCWGC	2 cut(s)	356, 1032
ArsI	GACNNNNNNTTYG	2 cut(s)	607, 639
AsiGI	ACCGGT	2 cut(s)	204, 498
Asp700I	GAANNNNTTC	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	201
AspA2I	CCTAGG	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	6 cut(s)	55, 141, 201, 206, 775, 888
AvaI	CYCGRG	2 cut(s)	524, 882
AvrII	CCTAGG	1 cut(s)	152
BalI	TGGCCA	2 cut(s)	402, 944
BanI	GGYRCC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	817
Bbv12I	GWGCWC	1 cut(s)	883
BbvI	GCAGC	2 cut(s)	368, 1044
BccI	CCATC	2 cut(s)	303, 468
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	7 cut(s)	87, 153, 618, 863, 905, 933, 1020
BfoI	RGCGCY	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	830
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	178, 357, 1033
BlnI	CCTAGG	1 cut(s)	152
BlsI	GCNGC	3 cut(s)	179, 358, 1034
BmcAI	AGTACT	1 cut(s)	1018
Bme1390I	CCNGG	1 cut(s)	337
BmeT110I	CYCGRG	2 cut(s)	524, 882
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	337
BoxI	GACNNNNGTC	1 cut(s)	959
BpiI	GAAGAC	1 cut(s)	817
BpuEI	CTTGAG	1 cut(s)	911
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	9, 152, 525
BsaWI	WCCGGW	4 cut(s)	204, 436, 498, 898
BsaXI	ACNNNNNCTCC	4 cut(s)	336, 366, 584, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	2 cut(s)	204, 498
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	3 cut(s)	9, 152, 525
BseGI	GGATG	2 cut(s)	109, 460
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	902
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	368, 1044
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	4 cut(s)	223, 402, 459, 944
BshNI	GGYRCC	1 cut(s)	201
BshTI	ACCGGT	2 cut(s)	204, 498
BsiHKAI	GWGCWC	1 cut(s)	883
BsiHKCI	CYCGRG	2 cut(s)	524, 882
BsiSI	CCGG	4 cut(s)	205, 437, 499, 899
BslFI	GGGAC	1 cut(s)	950
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	950
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	223, 402, 459, 944
BsoBI	CYCGRG	2 cut(s)	524, 882
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	4 cut(s)	280, 538, 886, 901
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	177, 786, 971
BspANI	GGCC	4 cut(s)	223, 402, 459, 944
BspCNI	CTCAG	1 cut(s)	903
BspHI	TCATGA	1 cut(s)	963
BspLI	GGNNCC	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	4 cut(s)	275, 533, 894, 909
BspQI	GCTCTTC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	201
BspTI	CTTAAG	1 cut(s)	830
BsrFI	RCCGGY	2 cut(s)	204, 498
BssAI	RCCGGY	2 cut(s)	204, 498
BssECI	CCNNGG	3 cut(s)	9, 152, 525
BssMI	GATC	4 cut(s)	280, 538, 886, 901
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	9, 152
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	3 cut(s)	213, 485, 720
Bst6I	CTCTTC	2 cut(s)	80, 357
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	830
BstC8I	GCNNGC	3 cut(s)	124, 369, 684
BstDEI	CTNAG	3 cut(s)	572, 911, 1026
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	109, 460
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	4 cut(s)	283, 541, 889, 904
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	4 cut(s)	280, 538, 886, 901
BstMWI	GCNNNNNNNGC	4 cut(s)	601, 618, 713, 1029
BstNI	CCWGG	1 cut(s)	337
BstNSI	RCATGY	1 cut(s)	126
BstPAI	GACNNNNGTC	1 cut(s)	959
BstPI	GGTNACC	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	335
BstV1I	GCAGC	2 cut(s)	368, 1044
BstV2I	GAAGAC	1 cut(s)	817
BstX2I	RGATCY	2 cut(s)	886, 901
BstYI	RGATCY	2 cut(s)	886, 901
BsuRI	GGCC	4 cut(s)	223, 402, 459, 944
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	889
BtsCI	GGATG	2 cut(s)	109, 460
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	642, 908
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	124, 369, 684
CciI	TCATGA	1 cut(s)	963
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	2 cut(s)	204, 498
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	5 cut(s)	202, 328, 451, 758, 1017
CspAI	ACCGGT	2 cut(s)	204, 498
CviAII	CATG	8 cut(s)	10, 123, 265, 430, 589, 748, 940, 964
CviQI	GTAC	5 cut(s)	202, 328, 451, 758, 1017
DdeI	CTNAG	3 cut(s)	572, 911, 1026
DpnI	GATC	4 cut(s)	282, 540, 888, 903
DpnII	GATC	4 cut(s)	280, 538, 886, 901
EaeI	YGGCCR	2 cut(s)	400, 942
Eam1104I	CTCTTC	2 cut(s)	80, 357
EarI	CTCTTC	2 cut(s)	80, 357
Eco130I	CCWWGG	2 cut(s)	9, 152
Eco57I	CTGAAG	2 cut(s)	381, 746
Eco88I	CYCGRG	2 cut(s)	524, 882
Eco91I	GGTNACC	1 cut(s)	207
EcoO65I	GGTNACC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	2 cut(s)	9, 152
ErhI	CCWWGG	2 cut(s)	9, 152
FaeI	CATG	8 cut(s)	13, 126, 268, 433, 592, 751, 943, 967
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	8 cut(s)	9, 122, 264, 429, 588, 747, 939, 963
FauI	CCCGC	1 cut(s)	964
FauNDI	CATATG	1 cut(s)	678
Fnu4HI	GCNGC	3 cut(s)	178, 357, 1033
FokI	GGATG	2 cut(s)	96, 447
Fsp4HI	GCNGC	3 cut(s)	178, 357, 1033
FspBI	CTAG	7 cut(s)	87, 153, 618, 863, 905, 933, 1020
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	3 cut(s)	178, 357, 1033
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	4 cut(s)	223, 402, 459, 944
HapII	CCGG	4 cut(s)	205, 437, 499, 899
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	13, 126, 268, 433, 592, 751, 943, 967
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	7 cut(s)	40, 146, 248, 606, 673, 804, 893
HpaII	CCGG	4 cut(s)	205, 437, 499, 899
HphI	GGTGA	6 cut(s)	55, 141, 201, 206, 775, 888
Hpy166II	GTNNAC	1 cut(s)	954
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	5 cut(s)	143, 701, 884, 890, 964
Hpy8I	GTNNAC	1 cut(s)	954
Hpy99I	CGWCG	4 cut(s)	248, 278, 419, 422
HpyAV	CCTTC	2 cut(s)	625, 804
HpyCH4III	ACNGT	3 cut(s)	213, 485, 720
HpyCH4IV	ACGT	3 cut(s)	243, 425, 489
HpyCH4V	TGCA	6 cut(s)	134, 325, 356, 514, 686, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	601, 618, 713, 1029
HpyF3I	CTNAG	3 cut(s)	572, 911, 1026
HpySE526I	ACGT	3 cut(s)	243, 425, 489
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	13, 126, 268, 433, 592, 751, 943, 967
HspAI	GCGC	1 cut(s)	180
KpnI	GGTACC	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	280, 538, 886, 901
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	3 cut(s)	376, 592, 712
Lsp1109I	GCAGC	2 cut(s)	368, 1044
MaeI	CTAG	7 cut(s)	87, 153, 618, 863, 905, 933, 1020
MaeII	ACGT	3 cut(s)	243, 425, 489
MaeIII	GTNAC	4 cut(s)	207, 485, 781, 894
MalI	GATC	4 cut(s)	282, 540, 888, 903
MboI	GATC	4 cut(s)	280, 538, 886, 901
MboII	GAAGA	6 cut(s)	67, 374, 488, 817, 927, 992
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	2 cut(s)	886, 901
MhlI	GDGCHC	1 cut(s)	883
MlsI	TGGCCA	2 cut(s)	402, 944
MluCI	AATT	3 cut(s)	530, 622, 711
MluNI	TGGCCA	2 cut(s)	402, 944
MlyI	GAGTC	2 cut(s)	34, 902
MmeI	TCCRAC	3 cut(s)	58, 634, 644
MnlI	CCTC	8 cut(s)	102, 117, 213, 295, 338, 441, 448, 520
Mox20I	TGGCCA	2 cut(s)	402, 944
MroXI	GAANNNNTTC	1 cut(s)	252
MscI	TGGCCA	2 cut(s)	402, 944
MseI	TTAA	3 cut(s)	732, 831, 849
Msp20I	TGGCCA	2 cut(s)	402, 944
MspA1I	CMGCKG	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	830
MspI	CCGG	4 cut(s)	205, 437, 499, 899
MspR9I	CCNGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	4 cut(s)	601, 618, 713, 1029
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	4 cut(s)	280, 538, 886, 901
NlaIII	CATG	8 cut(s)	13, 126, 268, 433, 592, 751, 943, 967
NlaIV	GGNNCC	1 cut(s)	203
NmeAIII	GCCGAG	1 cut(s)	98
NmuCI	GTSAC	3 cut(s)	207, 781, 894
NspI	RCATGY	1 cut(s)	126
PaeI	GCATGC	1 cut(s)	126
PagI	TCATGA	1 cut(s)	963
PciSI	GCTCTTC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 414
PctI	GAATGC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	5 cut(s)	146, 248, 606, 673, 804
PflFI	GACNNNGTC	1 cut(s)	242
PinAI	ACCGGT	2 cut(s)	204, 498
PkrI	GCNGC	3 cut(s)	179, 358, 1034
PleI	GAGTC	2 cut(s)	34, 901
PpsI	GAGTC	2 cut(s)	34, 901
PshAI	GACNNNNGTC	1 cut(s)	959
Psp1406I	AACGTT	2 cut(s)	425, 489
Psp6I	CCWGG	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	886, 901
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	5 cut(s)	203, 329, 452, 759, 1018
RsaNI	GTAC	5 cut(s)	202, 328, 451, 758, 1017
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	732, 831, 849
SatI	GCNGC	3 cut(s)	178, 357, 1033
Sau3AI	GATC	4 cut(s)	280, 538, 886, 901
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	1018
SchI	GAGTC	2 cut(s)	34, 902
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	883
SmlI	CTYRAG	2 cut(s)	830, 890
SmoI	CTYRAG	2 cut(s)	830, 890
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	3 cut(s)	530, 622, 711
SsiI	CCGC	3 cut(s)	177, 786, 971
SspMI	CTAG	7 cut(s)	87, 153, 618, 863, 905, 933, 1020
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	2 cut(s)	9, 152
TaaI	ACNGT	3 cut(s)	213, 485, 720
TaiI	ACGT	3 cut(s)	246, 428, 492
TaqI	TCGA	3 cut(s)	246, 414, 924
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	530, 622, 711
TatI	WGTACW	3 cut(s)	327, 757, 1016
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	5 cut(s)	146, 248, 606, 673, 804
Tru1I	TTAA	3 cut(s)	732, 831, 849
Tru9I	TTAA	3 cut(s)	732, 831, 849
TscAI	CASTG	2 cut(s)	642, 915
TseFI	GTSAC	3 cut(s)	207, 781, 894
TseI	GCWGC	2 cut(s)	356, 1032
Tsp45I	GTSAC	3 cut(s)	207, 781, 894
TspDTI	ATGAA	5 cut(s)	253, 418, 489, 577, 665
TspGWI	ACGGA	2 cut(s)	573, 769
TspRI	CASTG	2 cut(s)	642, 915
Tth111I	GACNNNGTC	1 cut(s)	242
Vha464I	CTTAAG	1 cut(s)	830
XceI	RCATGY	1 cut(s)	126
XmaJI	CCTAGG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	7 cut(s)	87, 153, 618, 863, 905, 933, 1020
ZrmI	AGTACT	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.