Rh2AG604700

protein At5g03900, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
83290361 .. 83291648
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG604700.1

Sequence Viewer

Length: 1158 bp
ATGGCGTCCATGGTGGCGACCTGCTTCACACTTCAACCAACTCTTCATCCTCGTCTCGCTTTCAACAGTTCACTCTTCCCTAACCCTAGACCTCTCAAAACCTTTCCTGATCCTATTCTAACACCGATCTTCCAGGTATGCTTTTCTGCGAAGCTTCAAGAACCTAGGGCTTTGGTCCCCGTTTCAAGAGTGTGCCTCGGCTCCGCCACTGGGATTAGAAAAGACGGCGGCGGCGCTGATTTCAAGGGTGGAGGATCACCATCTTGGAGGCCACGAGCAGTCGGAGCACAGAGTGATCATGAGACCTCATCTGAACCCAAAAAAAATATCATACTCCAATTCGTCGAATCCATTCGGTCATTCATGTTTGGCGATGGCGATCCAAATAGGGTAACGAAAGAGGAGAGATGGAAGTTGATTGGGCAATACATAACCTCCAAGGGCGGTGTTGTTGCAGCTGAAGAACTTGCTCCATATCTTGACCCTTTAGAAACTAAAGGGAAAAATGACTGCCTTCAGATCAACGACGAAACATACATGCTACCGGTTCTGATGAGGTACGAGGGTCATCCCGTGATTGAAGAAGACGGAAACGTTCTATACCTGTTTATATCTCTGCAACCCACAGCCAAGGAATCGAGTGATCCTAATTTTGTCAAAGGAGCACTACTTAAGAAAAAGTTTTTCATGGAGAATAAGTGGCGGTTCAGCAAGGCTAGCACTTTGGAGAAGGCAGTGATTGTAGGGTTTGGTGGACTTTGTTGGAAAGGGATTCAGATGCTTACCGAGGGTTTGCTTCTGGAAACTCCAATTGCCCCCGGTGGTTATGTTACATTTTTCTCTGCAATGCTTCCAGTACTTCAGGCTTGTGTTATTTCCATCACCGCTATTCCTTCGTTGAGATTCGTTTTGTTTTGCATCATTTTCCTTAAGAGAAATGCTGATATTAAGAAAAGAAATCTGGCAAGACAGCGATGTGCTCGGGATCTTGAGTCCCCGGATCTAGCACTGAGACGAAAGCTCCAAGCTGCTCGGGACATGGCCAAAAGGTTGACTATAGTCATGACTGCGGGCCAGGAGGATATGCCTGTTAATGTCTATGGTACTAATAGGAGTACTAGTACTAACAGAAGCAGGGATTTGGTTGAGGACATTTGA

Protein Analysis

385

Amino Acids

42.77

Weight (kDa)

9.25

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018066)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g48690
rosa_chinensis RchiOBHm_Chr2g0168601
rosa_laevigata RLG00000021790
rosa_multiflora Rmu_sc0002416.1_g000011
rosa_roxburghii Rroxscaffold_2G00082840
rosa_rugosa Rorug02G0534200
rosa_samantha Rh2AG604700 Rh2BG617700 Rh2CG585900 Rh2DG628300
rosa_wichuraiana Rw2G050120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AciI CCGC 7 cut(s) 204, 228, 231, 444, 703, 885, 1070
AclI AACGTT 1 cut(s) 594
AclWI GGATC 6 cut(s) 104, 262, 374, 638, 993, 1008
AcoI YGGCCR 1 cut(s) 1041
AcuI CTGAAG 3 cut(s) 480, 500, 845
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 5 cut(s) 560, 858, 1105, 1117, 1123
AfiI CCNNNNNNNGG 1 cut(s) 210
AflII CTTAAG 2 cut(s) 671, 929
AgeI ACCGGT 1 cut(s) 544
AgsI TTSAA 6 cut(s) 35, 64, 158, 186, 244, 581
AhlI ACTAGT 1 cut(s) 1118
AjnI CCWGG 2 cut(s) 132, 1074
AluBI AGCT 4 cut(s) 154, 458, 1021, 1028
AluI AGCT 4 cut(s) 154, 458, 1021, 1028
Alw21I GWGCWC 3 cut(s) 289, 667, 982
Alw26I GTCTC 3 cut(s) 59, 296, 1006
AlwI GGATC 6 cut(s) 104, 262, 374, 638, 993, 1008
Ama87I CYCGRG 2 cut(s) 981, 1032
AoxI GGCC 3 cut(s) 269, 1041, 1072
ApeKI GCWGC 2 cut(s) 455, 1028
AsiGI ACCGGT 1 cut(s) 544
Asp700I GAANNNNTTC 1 cut(s) 351
AspA2I CCTAGG 1 cut(s) 164
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 175, 1072
AsuC2I CCSGG 2 cut(s) 819, 998
AsuHPI GGTGA 2 cut(s) 249, 874
AsuNHI GCTAGC 1 cut(s) 716
AvaI CYCGRG 2 cut(s) 981, 1032
AvaII GGWCC 1 cut(s) 175
AvrII CCTAGG 1 cut(s) 164
BaeI ACNNNNGTAYC 2 cut(s) 550, 583
BalI TGGCCA 1 cut(s) 1043
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 3 cut(s) 289, 667, 982
BbvI GCAGC 2 cut(s) 467, 1015
BccI CCATC 4 cut(s) 268, 368, 402, 887
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 2 cut(s) 134, 1076
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 2 cut(s) 819, 998
BcoDI GTCTC 3 cut(s) 59, 296, 1006
BcuI ACTAGT 1 cut(s) 1118
BfaI CTAG 5 cut(s) 87, 165, 717, 1004, 1119
BfmI CTRYAG 1 cut(s) 1056
BfoI RGCGCY 1 cut(s) 237
BfrI CTTAAG 2 cut(s) 671, 929
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 4 cut(s) 229, 232, 456, 1029
BlnI CCTAGG 1 cut(s) 164
BlsI GCNGC 4 cut(s) 230, 233, 457, 1030
BmcAI AGTACT 3 cut(s) 858, 1117, 1123
Bme1390I CCNGG 4 cut(s) 134, 819, 998, 1076
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 2 cut(s) 981, 1032
BmgT120I GGNCC 2 cut(s) 175, 1072
BmiI GGNNCC 2 cut(s) 177, 202
BmrFI CCNGG 4 cut(s) 134, 819, 998, 1076
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 768, 927
BmtI GCTAGC 1 cut(s) 720
BmuI ACTGGG 1 cut(s) 219
BoxI GACNNNNGTC 1 cut(s) 1058
BpiI GAAGAC 1 cut(s) 591
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpuEI CTTGAG 1 cut(s) 1010
BpuMI CCSGG 2 cut(s) 819, 998
BsaBI GATNNNNATC 2 cut(s) 259, 378
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 8 cut(s) 9, 164, 196, 438, 630, 786, 817, 996
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 8 cut(s) 419, 449, 683, 713, 1005, 1035, 1105, 1135
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 2 cut(s) 214, 854
Bse3DI GCAATG 1 cut(s) 852
Bse8I GATNNNNATC 2 cut(s) 259, 378
BseBI CCWGG 2 cut(s) 134, 1076
BseDI CCNNGG 8 cut(s) 9, 164, 196, 438, 630, 786, 817, 996
BseGI GGATG 2 cut(s) 46, 568
BseJI GATNNNNATC 2 cut(s) 259, 378
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 1 cut(s) 1001
BseNI ACTGG 2 cut(s) 214, 854
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 467, 1015
BshFI GGCC 3 cut(s) 271, 1043, 1074
BshTI ACCGGT 1 cut(s) 544
BsiHKAI GWGCWC 3 cut(s) 289, 667, 982
BsiHKCI CYCGRG 2 cut(s) 981, 1032
BsiSI CCGG 3 cut(s) 545, 819, 998
BslFI GGGAC 3 cut(s) 161, 979, 1049
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 3 cut(s) 59, 296, 1006
BsmBI CGTCTC 2 cut(s) 59, 1006
BsmFI GGGAC 3 cut(s) 161, 979, 1049
BsnI GGCC 3 cut(s) 271, 1043, 1074
Bso31I GGTCTC 1 cut(s) 296
BsoBI CYCGRG 2 cut(s) 981, 1032
Bsp1286I GDGCHC 3 cut(s) 289, 667, 982
Bsp143I GATC 9 cut(s) 109, 126, 254, 295, 379, 519, 643, 985, 1000
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 7 cut(s) 204, 228, 231, 444, 703, 885, 1070
BspANI GGCC 3 cut(s) 271, 1043, 1074
BspCNI CTCAG 1 cut(s) 1002
BspHI TCATGA 2 cut(s) 298, 1062
BspLI GGNNCC 2 cut(s) 177, 202
BspMI ACCTGC 1 cut(s) 29
BspOI GCTAGC 1 cut(s) 720
BspPI GGATC 6 cut(s) 104, 262, 374, 638, 993, 1008
BspTI CTTAAG 2 cut(s) 671, 929
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 852
BsrFI RCCGGY 1 cut(s) 544
BsrI ACTGG 2 cut(s) 214, 854
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 8 cut(s) 9, 164, 196, 438, 630, 786, 817, 996
BssMI GATC 9 cut(s) 109, 126, 254, 295, 379, 519, 643, 985, 1000
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 4 cut(s) 9, 164, 438, 630
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 134, 1076
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 48, 80
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 2 cut(s) 671, 929
BstC8I GCNNGC 2 cut(s) 718, 1072
BstDEI CTNAG 1 cut(s) 1010
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 46, 568
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 9 cut(s) 112, 129, 257, 298, 382, 522, 646, 988, 1003
BstMAI GTCTC 3 cut(s) 59, 296, 1006
BstMBI GATC 9 cut(s) 109, 126, 254, 295, 379, 519, 643, 985, 1000
BstMWI GCNNNNNNNGC 2 cut(s) 284, 717
BstNI CCWGG 2 cut(s) 134, 1076
BstNSI RCATGY 1 cut(s) 541
BstPAI GACNNNNGTC 1 cut(s) 1058
BstSCI CCNGG 4 cut(s) 132, 817, 996, 1074
BstSFI CTRYAG 1 cut(s) 1056
BstV1I GCAGC 2 cut(s) 467, 1015
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 2 cut(s) 985, 1000
BstYI RGATCY 2 cut(s) 985, 1000
BsuRI GGCC 3 cut(s) 271, 1043, 1074
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 2 cut(s) 387, 988
BtsCI GGATG 2 cut(s) 46, 568
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 3 cut(s) 207, 741, 1007
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 718, 1072
CciI TCATGA 2 cut(s) 298, 1062
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 175, 1072
Csp6I GTAC 5 cut(s) 559, 857, 1104, 1116, 1122
CspAI ACCGGT 1 cut(s) 544
CviAII CATG 7 cut(s) 10, 299, 364, 538, 688, 1039, 1063
CviQI GTAC 5 cut(s) 559, 857, 1104, 1116, 1122
DdeI CTNAG 1 cut(s) 1010
DpnI GATC 9 cut(s) 111, 128, 256, 297, 381, 521, 645, 987, 1002
DpnII GATC 9 cut(s) 109, 126, 254, 295, 379, 519, 643, 985, 1000
DraIII CACNNNGTG 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 1041
Eam1104I CTCTTC 2 cut(s) 48, 80
EarI CTCTTC 2 cut(s) 48, 80
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 4 cut(s) 9, 164, 438, 630
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 3 cut(s) 480, 500, 845
Eco88I CYCGRG 2 cut(s) 981, 1032
EcoRII CCWGG 2 cut(s) 132, 1074
EcoT14I CCWWGG 4 cut(s) 9, 164, 438, 630
ErhI CCWWGG 4 cut(s) 9, 164, 438, 630
Esp3I CGTCTC 2 cut(s) 59, 1006
FaeI CATG 7 cut(s) 13, 302, 367, 541, 691, 1042, 1066
FaqI GGGAC 3 cut(s) 161, 979, 1049
FatI CATG 7 cut(s) 9, 298, 363, 537, 687, 1038, 1062
FauI CCCGC 1 cut(s) 1063
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 4 cut(s) 229, 232, 456, 1029
FokI GGATG 2 cut(s) 33, 555
Fsp4HI GCNGC 4 cut(s) 229, 232, 456, 1029
FspBI CTAG 5 cut(s) 87, 165, 717, 1004, 1119
GlaI GCGC 1 cut(s) 235
GluI GCNGC 4 cut(s) 229, 232, 456, 1029
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 3 cut(s) 271, 1043, 1074
HapII CCGG 3 cut(s) 545, 819, 998
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 13, 302, 367, 541, 691, 1042, 1066
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 1053
HindII GTYRAC 1 cut(s) 1053
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 5 cut(s) 347, 635, 772, 903, 992
HpaII CCGG 3 cut(s) 545, 819, 998
HphI GGTGA 2 cut(s) 249, 874
Hpy166II GTNNAC 3 cut(s) 71, 755, 1053
Hpy188I TCNGA 5 cut(s) 284, 313, 519, 552, 777
Hpy8I GTNNAC 3 cut(s) 71, 755, 1053
Hpy99I CGWCG 2 cut(s) 347, 530
HpyAV CCTTC 3 cut(s) 524, 724, 903
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 4 cut(s) 455, 619, 845, 918
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 717
HpyF3I CTNAG 1 cut(s) 1010
HpySE526I ACGT 1 cut(s) 594
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 13, 302, 367, 541, 691, 1042, 1066
HspAI GCGC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 9 cut(s) 109, 126, 254, 295, 379, 519, 643, 985, 1000
LmnI GCTCC 5 cut(s) 206, 284, 475, 662, 1026
Lsp1109I GCAGC 2 cut(s) 467, 1015
LweI GCATC 2 cut(s) 768, 927
MaeI CTAG 5 cut(s) 87, 165, 717, 1004, 1119
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 391, 829
MalI GATC 9 cut(s) 111, 128, 256, 297, 381, 521, 645, 987, 1002
MboI GATC 9 cut(s) 109, 126, 254, 295, 379, 519, 643, 985, 1000
MboII GAAGA 6 cut(s) 35, 67, 121, 473, 593, 596
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 2 cut(s) 985, 1000
MhlI GDGCHC 3 cut(s) 289, 667, 982
MlsI TGGCCA 1 cut(s) 1043
MluCI AATT 3 cut(s) 338, 649, 810
MluNI TGGCCA 1 cut(s) 1043
MlyI GAGTC 1 cut(s) 1001
MmeI TCCRAC 2 cut(s) 262, 743
Mox20I TGGCCA 1 cut(s) 1043
MroXI GAANNNNTTC 1 cut(s) 351
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 4 cut(s) 672, 930, 948, 1092
Msp20I TGGCCA 1 cut(s) 1043
MspA1I CMGCKG 1 cut(s) 458
MspCI CTTAAG 2 cut(s) 671, 929
MspI CCGG 3 cut(s) 545, 819, 998
MspR9I CCNGG 4 cut(s) 134, 819, 998, 1076
MunI CAATTG 1 cut(s) 810
MvaI CCWGG 2 cut(s) 134, 1076
MwoI GCNNNNNNNGC 2 cut(s) 284, 717
NciI CCSGG 2 cut(s) 819, 998
NcoI CCATGG 1 cut(s) 9
NdeII GATC 9 cut(s) 109, 126, 254, 295, 379, 519, 643, 985, 1000
NheI GCTAGC 1 cut(s) 716
NlaIII CATG 7 cut(s) 13, 302, 367, 541, 691, 1042, 1066
NlaIV GGNNCC 2 cut(s) 177, 202
NmeAIII GCCGAG 1 cut(s) 177
NspI RCATGY 1 cut(s) 541
PagI TCATGA 2 cut(s) 298, 1062
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 4 cut(s) 347, 635, 772, 903
PinAI ACCGGT 1 cut(s) 544
PkrI GCNGC 4 cut(s) 230, 233, 457, 1030
PleI GAGTC 1 cut(s) 1000
PpsI GAGTC 1 cut(s) 1000
PshAI GACNNNNGTC 1 cut(s) 1058
Psp1406I AACGTT 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 132, 1074
PspGI CCWGG 2 cut(s) 132, 1074
PspN4I GGNNCC 2 cut(s) 177, 202
PspPI GGNCC 2 cut(s) 175, 1072
PsuI RGATCY 2 cut(s) 985, 1000
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 5 cut(s) 560, 858, 1105, 1117, 1123
RsaNI GTAC 5 cut(s) 559, 857, 1104, 1116, 1122
SaqAI TTAA 4 cut(s) 672, 930, 948, 1092
SatI GCNGC 4 cut(s) 229, 232, 456, 1029
Sau3AI GATC 9 cut(s) 109, 126, 254, 295, 379, 519, 643, 985, 1000
Sau96I GGNCC 2 cut(s) 175, 1072
ScaI AGTACT 3 cut(s) 858, 1117, 1123
SchI GAGTC 1 cut(s) 1001
ScrFI CCNGG 4 cut(s) 134, 819, 998, 1076
SduI GDGCHC 3 cut(s) 289, 667, 982
SfaNI GCATC 2 cut(s) 768, 927
SfcI CTRYAG 1 cut(s) 1056
SinI GGWCC 1 cut(s) 175
SmlI CTYRAG 3 cut(s) 671, 929, 989
SmoI CTYRAG 3 cut(s) 671, 929, 989
SpeI ACTAGT 1 cut(s) 1118
Sse9I AATT 3 cut(s) 338, 649, 810
SsiI CCGC 7 cut(s) 204, 228, 231, 444, 703, 885, 1070
SspMI CTAG 5 cut(s) 87, 165, 717, 1004, 1119
StyD4I CCNGG 4 cut(s) 132, 817, 996, 1074
StyI CCWWGG 4 cut(s) 9, 164, 438, 630
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 597
TaqI TCGA 2 cut(s) 345, 638
TaqII GACCGA 1 cut(s) 345
TasI AATT 3 cut(s) 338, 649, 810
TatI WGTACW 3 cut(s) 856, 1115, 1121
TauI GCSGC 2 cut(s) 231, 234
TfiI GAWTC 4 cut(s) 347, 635, 772, 903
Tru1I TTAA 4 cut(s) 672, 930, 948, 1092
Tru9I TTAA 4 cut(s) 672, 930, 948, 1092
TscAI CASTG 3 cut(s) 214, 741, 1014
TseI GCWGC 2 cut(s) 455, 1028
TspDTI ATGAA 3 cut(s) 35, 352, 676
TspGWI ACGGA 1 cut(s) 603
TspRI CASTG 3 cut(s) 214, 741, 1014
Vha464I CTTAAG 2 cut(s) 671, 929
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 541
XmaJI CCTAGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 5 cut(s) 87, 165, 717, 1004, 1119
ZrmI AGTACT 3 cut(s) 858, 1117, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.