Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0018066

Physical Location & Seq

Genomic Coordinates Forward (+)

77787374 .. 77788167

Gene Structure 794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G050120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTTGGCGATGGCGATCCAAATAGGGTAACGAAAGAGGAGAGATGGAAGTTGATTGGGCAATACATAACCTCCAAGGGCGGTGTTGTTGCAGCTGAAGAACTTGCTCCATATCTTGACCCTTTAGAAACTAAAGGGAAAAATGAGAGCCTTCAGATCAACGACGAAACATACATGCTACCGGTTCTGATGAGGTACGAGGGTCATCCCGTGATTGAAGAAGACGGAAACGTTCTATACCTTGATCCTAATTTTGTCAAAGGAGCACTACTTAAGAAAAAGTTTTTGATGGAGAATAAGTGGTGGTTCAGCAAGGCTAGCACTTTCGAGAAGGCAGTGATTGTAGGGTTTGGTGGACTTTGTTGGAAAGGGATTCAGATGCTTACCGAGGGTTTGCTTCTGGAAACTCCAATTGCCCCCGGTGGTTATGTTACATTTTTCTCTGCAATGCTTCCAGTACTTCAGGCTTGTGTTATTTCCATCACCGCTATTCCTTCGTTGAGATTCGTTTTGTTTTGTATCATTTTCCTTAAGAGAAATGCTGATATTAAGAAAAGAAATCTGGCAAGACAGCGATGTGCTCGGGATCTTGAGTCCCCGGATCTAGCACTGAGACAAAAGCTCCAAGCTGCTCGGGACATGGCCAAAAGGTTGACTATAGTCATGACTGCGGGCCAGGAGGATATGCCTGTTAATGTCTATGGTACTAATAGGAGTACTAGTACTAACAGAAGCAGGGATTTGGTTGAGGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

28.38

Weight (kDa)

8.58

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018066)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48690
rosa_chinensis	RchiOBHm_Chr2g0168601
rosa_laevigata	RLG00000021790
rosa_multiflora	Rmu_sc0002416.1_g000011
rosa_roxburghii	Rroxscaffold_2G00082840
rosa_rugosa	Rorug02G0534200
rosa_samantha	Rh2AG604700 Rh2BG617700 Rh2CG585900 Rh2DG628300
rosa_wichuraiana	Rw2G050120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	81, 486, 671
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	4 cut(s)	11, 239, 594, 609
AcoI	YGGCCR	1 cut(s)	642
AcuI	CTGAAG	3 cut(s)	117, 137, 446
AfaI	GTAC	5 cut(s)	197, 459, 706, 718, 724
AflII	CTTAAG	2 cut(s)	272, 530
AgeI	ACCGGT	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	218
AhlI	ACTAGT	1 cut(s)	719
AjnI	CCWGG	1 cut(s)	675
AluBI	AGCT	3 cut(s)	95, 622, 629
AluI	AGCT	3 cut(s)	95, 622, 629
Alw21I	GWGCWC	2 cut(s)	268, 583
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	4 cut(s)	11, 239, 594, 609
Ama87I	CYCGRG	2 cut(s)	582, 633
AoxI	GGCC	2 cut(s)	642, 673
ApeKI	GCWGC	2 cut(s)	92, 629
AsiGI	ACCGGT	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	673
AsuC2I	CCSGG	2 cut(s)	420, 599
AsuHPI	GGTGA	1 cut(s)	475
AsuNHI	GCTAGC	1 cut(s)	317
AvaI	CYCGRG	2 cut(s)	582, 633
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BalI	TGGCCA	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	268, 583
BbvI	GCAGC	2 cut(s)	104, 616
BccI	CCATC	4 cut(s)	5, 39, 283, 488
BciT130I	CCWGG	1 cut(s)	677
BcnI	CCSGG	2 cut(s)	420, 599
BcoDI	GTCTC	1 cut(s)	607
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	3 cut(s)	318, 605, 720
BfmI	CTRYAG	1 cut(s)	657
BfrI	CTTAAG	2 cut(s)	272, 530
BisI	GCNGC	2 cut(s)	93, 630
BlsI	GCNGC	2 cut(s)	94, 631
BmcAI	AGTACT	3 cut(s)	459, 718, 724
Bme1390I	CCNGG	3 cut(s)	420, 599, 677
BmeT110I	CYCGRG	2 cut(s)	582, 633
BmgT120I	GGNCC	1 cut(s)	673
BmrFI	CCNGG	3 cut(s)	420, 599, 677
BmsI	GCATC	1 cut(s)	369
BmtI	GCTAGC	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	2 cut(s)	420, 599
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	75, 387, 418, 597
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	8 cut(s)	56, 86, 284, 314, 606, 636, 706, 736
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	4 cut(s)	75, 387, 418, 597
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	104, 616
BshFI	GGCC	2 cut(s)	644, 675
BshTI	ACCGGT	1 cut(s)	181
BsiHKAI	GWGCWC	2 cut(s)	268, 583
BsiHKCI	CYCGRG	2 cut(s)	582, 633
BsiSI	CCGG	3 cut(s)	182, 420, 599
BslFI	GGGAC	2 cut(s)	580, 650
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	2 cut(s)	580, 650
BsnI	GGCC	2 cut(s)	644, 675
BsoBI	CYCGRG	2 cut(s)	582, 633
Bsp1286I	GDGCHC	2 cut(s)	268, 583
Bsp143I	GATC	5 cut(s)	16, 156, 244, 586, 601
BspACI	CCGC	3 cut(s)	81, 486, 671
BspANI	GGCC	2 cut(s)	644, 675
BspCNI	CTCAG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	663
BspOI	GCTAGC	1 cut(s)	321
BspPI	GGATC	4 cut(s)	11, 239, 594, 609
BspTI	CTTAAG	2 cut(s)	272, 530
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	4 cut(s)	75, 387, 418, 597
BssMI	GATC	5 cut(s)	16, 156, 244, 586, 601
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	677
BstAFI	CTTAAG	2 cut(s)	272, 530
BstC8I	GCNNGC	2 cut(s)	319, 673
BstDEI	CTNAG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	5 cut(s)	19, 159, 247, 589, 604
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	5 cut(s)	16, 156, 244, 586, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNI	CCWGG	1 cut(s)	677
BstNSI	RCATGY	1 cut(s)	178
BstPAI	GACNNNNGTC	1 cut(s)	659
BstSCI	CCNGG	3 cut(s)	418, 597, 675
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	2 cut(s)	104, 616
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	586, 601
BstYI	RGATCY	2 cut(s)	586, 601
BsuRI	GGCC	2 cut(s)	644, 675
BtgZI	GCGATG	2 cut(s)	24, 589
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 608
Cac8I	GCNNGC	2 cut(s)	319, 673
CciI	TCATGA	1 cut(s)	663
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	673
Csp6I	GTAC	5 cut(s)	196, 458, 705, 717, 723
CspAI	ACCGGT	1 cut(s)	181
CviAII	CATG	3 cut(s)	175, 640, 664
CviJI	RGCY	8 cut(s)	95, 150, 317, 467, 622, 629, 644, 675
CviKI_1	RGCY	8 cut(s)	95, 150, 317, 467, 622, 629, 644, 675
CviQI	GTAC	5 cut(s)	196, 458, 705, 717, 723
DdeI	CTNAG	1 cut(s)	611
DpnI	GATC	5 cut(s)	18, 158, 246, 588, 603
DpnII	GATC	5 cut(s)	16, 156, 244, 586, 601
EaeI	YGGCCR	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	75
Eco57I	CTGAAG	3 cut(s)	117, 137, 446
Eco88I	CYCGRG	2 cut(s)	582, 633
EcoRII	CCWGG	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	178, 643, 667
FaqI	GGGAC	2 cut(s)	580, 650
FatI	CATG	3 cut(s)	174, 639, 663
FauI	CCCGC	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	93, 630
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	93, 630
FspBI	CTAG	3 cut(s)	318, 605, 720
GluI	GCNGC	2 cut(s)	93, 630
HaeIII	GGCC	2 cut(s)	644, 675
HapII	CCGG	3 cut(s)	182, 420, 599
Hin1II	CATG	3 cut(s)	178, 643, 667
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	3 cut(s)	373, 504, 593
HpaII	CCGG	3 cut(s)	182, 420, 599
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	2 cut(s)	356, 654
Hpy188I	TCNGA	3 cut(s)	156, 189, 378
Hpy188III	TCNNGA	7 cut(s)	116, 328, 401, 584, 590, 635, 664
Hpy8I	GTNNAC	2 cut(s)	356, 654
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	161, 325, 504
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	92, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	1 cut(s)	611
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	178, 643, 667
Kzo9I	GATC	5 cut(s)	16, 156, 244, 586, 601
LmnI	GCTCC	3 cut(s)	112, 263, 627
Lsp1109I	GCAGC	2 cut(s)	104, 616
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	3 cut(s)	318, 605, 720
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	28, 430
MalI	GATC	5 cut(s)	18, 158, 246, 588, 603
MboI	GATC	5 cut(s)	16, 156, 244, 586, 601
MboII	GAAGA	3 cut(s)	110, 230, 233
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	2 cut(s)	586, 601
MhlI	GDGCHC	2 cut(s)	268, 583
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	2 cut(s)	250, 411
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	7 cut(s)	31, 82, 186, 193, 382, 673, 742
Mox20I	TGGCCA	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	4 cut(s)	273, 531, 549, 693
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	95
MspCI	CTTAAG	2 cut(s)	272, 530
MspI	CCGG	3 cut(s)	182, 420, 599
MspR9I	CCNGG	3 cut(s)	420, 599, 677
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	1 cut(s)	318
NciI	CCSGG	2 cut(s)	420, 599
NdeII	GATC	5 cut(s)	16, 156, 244, 586, 601
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	3 cut(s)	178, 643, 667
NspI	RCATGY	1 cut(s)	178
PagI	TCATGA	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	373, 504
PinAI	ACCGGT	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	94, 631
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PshAI	GACNNNNGTC	1 cut(s)	659
Psp1406I	AACGTT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PspPI	GGNCC	1 cut(s)	673
PsuI	RGATCY	2 cut(s)	586, 601
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	5 cut(s)	197, 459, 706, 718, 724
RsaNI	GTAC	5 cut(s)	196, 458, 705, 717, 723
SaqAI	TTAA	4 cut(s)	273, 531, 549, 693
SatI	GCNGC	2 cut(s)	93, 630
Sau3AI	GATC	5 cut(s)	16, 156, 244, 586, 601
Sau96I	GGNCC	1 cut(s)	673
ScaI	AGTACT	3 cut(s)	459, 718, 724
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	3 cut(s)	420, 599, 677
SduI	GDGCHC	2 cut(s)	268, 583
SetI	ASST	8 cut(s)	74, 97, 197, 234, 243, 624, 631, 653
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	657
SmlI	CTYRAG	3 cut(s)	272, 530, 590
SmoI	CTYRAG	3 cut(s)	272, 530, 590
SpeI	ACTAGT	1 cut(s)	719
Sse9I	AATT	2 cut(s)	250, 411
SsiI	CCGC	3 cut(s)	81, 486, 671
SspMI	CTAG	3 cut(s)	318, 605, 720
StyD4I	CCNGG	3 cut(s)	418, 597, 675
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	327
TasI	AATT	2 cut(s)	250, 411
TatI	WGTACW	3 cut(s)	457, 716, 722
TfiI	GAWTC	2 cut(s)	373, 504
Tru1I	TTAA	4 cut(s)	273, 531, 549, 693
Tru9I	TTAA	4 cut(s)	273, 531, 549, 693
TscAI	CASTG	2 cut(s)	342, 615
TseI	GCWGC	2 cut(s)	92, 629
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	342, 615
Vha464I	CTTAAG	2 cut(s)	272, 530
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	3 cut(s)	318, 605, 720
ZrmI	AGTACT	3 cut(s)	459, 718, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.