RLG00000021790

protein At5g03900, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
78340756 .. 78341880
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021790

Sequence Viewer

Length: 1125 bp
ATGGCGTCCATGGTGGCGACCTGCTTCACACTTCAACCAAGTCTTCATCCTCGTCTCGCTTTCAACAGTTCACTCTTCCCTAACGCTAGACCTCTGAAAACCTTTCCTGATCCTATTCTAACACCGATCTTCCCGCTATGCTTTTCTACGAAGCTTCAAGAACCTAGGGTTTTGGTCCCCGTTTCCAGAGCGTGCCTCGGCGCTGATTTCAAGGGTGGAAGATCACCATCATGGAGGCCAAAAGCAGTCGGAGCACAGAGTGATCATGAGACCTCATCTGAACCCAAACAAAATATCATTCTCCAATTCGTCGAATCCATTCGGTCATTCATGTTTGGTGATGGCGATCCAAATAGGGTAACGAAAGAGGAGAAATGGAAGTTGATTGGGCAATACATAACCTCCAAGGGCGGTGTTGTTGCAGCTGAAGAACTTGCTCCATATCTTGACCCTTTAGAAACTAAAGGGAAAAATGACAGCCTTCCGATCAACGACGAAACATACATGCTACCGGTTCTGATGAGGTACGAGGGTCATCCCGTGATTGAAGAAGACGGAAACGTTCTATACCGGTTTATATCTCTGCAACCCACAGCCAAGGAATCGAGTGATCCTAATTTTGTCAAAGGAAAACTACTTAAGAAAAAGTTTTTGATGGAGAATAAGTGGCGGTTCAGCAAGGCTAGCACTTTGGAGAAGGCAGTGATGGTAGGGTTTGGTGGACTTTGTTGGAAAGGGATTCATATGCTTACCGAGGGTTTGCTTCTGGAAACTCCAATTGCACCCGGTGGTTATGTTACGTTTTTCTCTGCAATGCTTCCAGTACTTCAGGCTTGTGTTATTTCCATCACCGCTATTCCTTCGTTGAGATTCGTTTTGTTTTGCATCATTTTCCTTAAGAGAAATGCTGATATTAAGAAAAGAAATCTAGCAAGACAGCGATGTGCTCGGGATCTTGAGTCCCCGGATCTAGCACTGAGACGAAAGCTCCAAGCTGCTCGGGACGTGGCCAAAAGGTTGACTATAGTCATGACTGCGGGCCTGGAGGATATGCCTGTTAATGTCTGTGGTACTAATAGGAGTACTAGTACTAACAGGAGCAGGGATTTGATTGAGGACATTTGA

Protein Analysis

375

Amino Acids

41.74

Weight (kDa)

9.32

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018066)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g48690
rosa_chinensis RchiOBHm_Chr2g0168601
rosa_laevigata RLG00000021790
rosa_multiflora Rmu_sc0002416.1_g000011
rosa_roxburghii Rroxscaffold_2G00082840
rosa_rugosa Rorug02G0534200
rosa_samantha Rh2AG604700 Rh2BG617700 Rh2CG585900 Rh2DG628300
rosa_wichuraiana Rw2G050120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AciI CCGC 5 cut(s) 134, 411, 670, 852, 1037
AclI AACGTT 1 cut(s) 561
AclWI GGATC 5 cut(s) 104, 341, 605, 960, 975
AcoI YGGCCR 1 cut(s) 1008
AcuI CTGAAG 2 cut(s) 447, 812
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 2 cut(s) 260, 788
AfaI GTAC 5 cut(s) 527, 825, 1072, 1084, 1090
AflII CTTAAG 2 cut(s) 638, 896
AgeI ACCGGT 2 cut(s) 511, 570
AgsI TTSAA 5 cut(s) 35, 64, 158, 211, 548
AhlI ACTAGT 1 cut(s) 1085
AjiI CACGTC 1 cut(s) 1006
AjnI CCWGG 1 cut(s) 1041
AluBI AGCT 4 cut(s) 154, 425, 988, 995
AluI AGCT 4 cut(s) 154, 425, 988, 995
Alw21I GWGCWC 2 cut(s) 256, 949
Alw26I GTCTC 3 cut(s) 59, 263, 973
AlwI GGATC 5 cut(s) 104, 341, 605, 960, 975
Ama87I CYCGRG 2 cut(s) 948, 999
AoxI GGCC 3 cut(s) 236, 1008, 1039
ApeKI GCWGC 2 cut(s) 422, 995
AsiGI ACCGGT 2 cut(s) 511, 570
Asp700I GAANNNNTTC 1 cut(s) 318
AspA2I CCTAGG 1 cut(s) 164
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 175, 1039
AsuC2I CCSGG 2 cut(s) 786, 965
AsuHPI GGTGA 3 cut(s) 216, 350, 841
AsuNHI GCTAGC 1 cut(s) 683
AvaI CYCGRG 2 cut(s) 948, 999
AvaII GGWCC 1 cut(s) 175
AvrII CCTAGG 1 cut(s) 164
BaeI ACNNNNGTAYC 2 cut(s) 517, 550
BalI TGGCCA 1 cut(s) 1010
BbsI GAAGAC 2 cut(s) 35, 558
Bbv12I GWGCWC 2 cut(s) 256, 949
BbvI GCAGC 2 cut(s) 434, 982
BccI CCATC 5 cut(s) 235, 335, 649, 700, 854
BciT130I CCWGG 1 cut(s) 1043
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 786, 965
BcoDI GTCTC 3 cut(s) 59, 263, 973
BcuI ACTAGT 1 cut(s) 1085
BfaI CTAG 6 cut(s) 87, 165, 684, 929, 971, 1086
BfmI CTRYAG 1 cut(s) 1023
BfoI RGCGCY 1 cut(s) 204
BfrI CTTAAG 2 cut(s) 638, 896
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 2 cut(s) 423, 996
BlnI CCTAGG 1 cut(s) 164
BlsI GCNGC 2 cut(s) 424, 997
BmcAI AGTACT 3 cut(s) 825, 1084, 1090
Bme1390I CCNGG 3 cut(s) 786, 965, 1043
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 2 cut(s) 948, 999
BmgBI CACGTC 1 cut(s) 1006
BmgT120I GGNCC 2 cut(s) 175, 1039
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 3 cut(s) 786, 965, 1043
BmsI GCATC 1 cut(s) 894
BmtI GCTAGC 1 cut(s) 687
BoxI GACNNNNGTC 1 cut(s) 1025
BpiI GAAGAC 2 cut(s) 35, 558
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 1 cut(s) 1064
BpuEI CTTGAG 1 cut(s) 977
BpuMI CCSGG 2 cut(s) 786, 965
BsaBI GATNNNNATC 2 cut(s) 226, 345
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 7 cut(s) 9, 164, 196, 405, 597, 753, 963
BsaWI WCCGGW 2 cut(s) 511, 570
BsaXI ACNNNNNCTCC 8 cut(s) 386, 416, 650, 680, 972, 1002, 1072, 1102
Bse118I RCCGGY 2 cut(s) 511, 570
Bse1I ACTGG 1 cut(s) 821
Bse3DI GCAATG 1 cut(s) 819
Bse8I GATNNNNATC 2 cut(s) 226, 345
BseBI CCWGG 1 cut(s) 1043
BseDI CCNNGG 7 cut(s) 9, 164, 196, 405, 597, 753, 963
BseGI GGATG 2 cut(s) 46, 535
BseJI GATNNNNATC 2 cut(s) 226, 345
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 1 cut(s) 968
BseNI ACTGG 1 cut(s) 821
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 2 cut(s) 434, 982
BshFI GGCC 3 cut(s) 238, 1010, 1041
BshTI ACCGGT 2 cut(s) 511, 570
BsiHKAI GWGCWC 2 cut(s) 256, 949
BsiHKCI CYCGRG 2 cut(s) 948, 999
BsiSI CCGG 4 cut(s) 512, 571, 786, 965
BslFI GGGAC 3 cut(s) 161, 946, 1016
BsmAI GTCTC 3 cut(s) 59, 263, 973
BsmBI CGTCTC 2 cut(s) 59, 973
BsmFI GGGAC 3 cut(s) 161, 946, 1016
BsnI GGCC 3 cut(s) 238, 1010, 1041
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 2 cut(s) 948, 999
Bsp1286I GDGCHC 2 cut(s) 256, 949
Bsp143I GATC 9 cut(s) 109, 126, 221, 262, 346, 486, 610, 952, 967
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 5 cut(s) 134, 411, 670, 852, 1037
BspANI GGCC 3 cut(s) 238, 1010, 1041
BspCNI CTCAG 1 cut(s) 969
BspHI TCATGA 2 cut(s) 265, 1029
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 29
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 5 cut(s) 104, 341, 605, 960, 975
BspTI CTTAAG 2 cut(s) 638, 896
BspTNI GGTCTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 2 cut(s) 511, 570
BsrI ACTGG 1 cut(s) 821
BssAI RCCGGY 2 cut(s) 511, 570
BssECI CCNNGG 7 cut(s) 9, 164, 196, 405, 597, 753, 963
BssMI GATC 9 cut(s) 109, 126, 221, 262, 346, 486, 610, 952, 967
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 9, 164, 405, 597
Bst2UI CCWGG 1 cut(s) 1043
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 2 cut(s) 638, 896
BstC8I GCNNGC 3 cut(s) 193, 685, 1039
BstDEI CTNAG 1 cut(s) 977
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 46, 535
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 9 cut(s) 112, 129, 224, 265, 349, 489, 613, 955, 970
BstMAI GTCTC 3 cut(s) 59, 263, 973
BstMBI GATC 9 cut(s) 109, 126, 221, 262, 346, 486, 610, 952, 967
BstMWI GCNNNNNNNGC 2 cut(s) 251, 684
BstNI CCWGG 1 cut(s) 1043
BstNSI RCATGY 1 cut(s) 508
BstPAI GACNNNNGTC 1 cut(s) 1025
BstSCI CCNGG 3 cut(s) 784, 963, 1041
BstSFI CTRYAG 1 cut(s) 1023
BstV1I GCAGC 2 cut(s) 434, 982
BstV2I GAAGAC 2 cut(s) 35, 558
BstX2I RGATCY 2 cut(s) 952, 967
BstYI RGATCY 2 cut(s) 952, 967
BsuRI GGCC 3 cut(s) 238, 1010, 1041
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 955
BtrI CACGTC 1 cut(s) 1006
BtsCI GGATG 2 cut(s) 46, 535
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 708, 974
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 3 cut(s) 193, 685, 1039
CciI TCATGA 2 cut(s) 265, 1029
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 2 cut(s) 511, 570
Cfr13I GGNCC 2 cut(s) 175, 1039
Csp6I GTAC 5 cut(s) 526, 824, 1071, 1083, 1089
CspAI ACCGGT 2 cut(s) 511, 570
CviAII CATG 6 cut(s) 10, 231, 266, 331, 505, 1030
CviQI GTAC 5 cut(s) 526, 824, 1071, 1083, 1089
DdeI CTNAG 1 cut(s) 977
DpnI GATC 9 cut(s) 111, 128, 223, 264, 348, 488, 612, 954, 969
DpnII GATC 9 cut(s) 109, 126, 221, 262, 346, 486, 610, 952, 967
DraIII CACNNNGTG 2 cut(s) 260, 788
EaeI YGGCCR 1 cut(s) 1008
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 4 cut(s) 9, 164, 405, 597
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 447, 812
Eco88I CYCGRG 2 cut(s) 948, 999
EcoRII CCWGG 1 cut(s) 1041
EcoT14I CCWWGG 4 cut(s) 9, 164, 405, 597
ErhI CCWWGG 4 cut(s) 9, 164, 405, 597
Esp3I CGTCTC 2 cut(s) 59, 973
FaeI CATG 6 cut(s) 13, 234, 269, 334, 508, 1033
FaqI GGGAC 3 cut(s) 161, 946, 1016
FatI CATG 6 cut(s) 9, 230, 265, 330, 504, 1029
FauI CCCGC 2 cut(s) 141, 1030
FauNDI CATATG 1 cut(s) 744
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 423, 996
FokI GGATG 2 cut(s) 33, 522
Fsp4HI GCNGC 2 cut(s) 423, 996
FspBI CTAG 6 cut(s) 87, 165, 684, 929, 971, 1086
GlaI GCGC 1 cut(s) 202
GluI GCNGC 2 cut(s) 423, 996
GsuI CTGGAG 1 cut(s) 1064
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 3 cut(s) 238, 1010, 1041
HapII CCGG 4 cut(s) 512, 571, 786, 965
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 13, 234, 269, 334, 508, 1033
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 5 cut(s) 314, 602, 739, 870, 959
HpaII CCGG 4 cut(s) 512, 571, 786, 965
HphI GGTGA 3 cut(s) 216, 350, 841
Hpy166II GTNNAC 3 cut(s) 71, 722, 1020
Hpy188I TCNGA 5 cut(s) 96, 251, 280, 486, 519
Hpy8I GTNNAC 3 cut(s) 71, 722, 1020
Hpy99I CGWCG 2 cut(s) 314, 497
HpyAV CCTTC 3 cut(s) 491, 691, 870
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 3 cut(s) 561, 800, 1005
HpyCH4V TGCA 5 cut(s) 422, 586, 782, 812, 885
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 684
HpyF3I CTNAG 1 cut(s) 977
HpySE526I ACGT 3 cut(s) 561, 800, 1005
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 13, 234, 269, 334, 508, 1033
HspAI GCGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 9 cut(s) 109, 126, 221, 262, 346, 486, 610, 952, 967
LmnI GCTCC 4 cut(s) 251, 442, 993, 1098
Lsp1109I GCAGC 2 cut(s) 434, 982
LweI GCATC 1 cut(s) 894
MaeI CTAG 6 cut(s) 87, 165, 684, 929, 971, 1086
MaeII ACGT 3 cut(s) 561, 800, 1005
MaeIII GTNAC 2 cut(s) 358, 796
MalI GATC 9 cut(s) 111, 128, 223, 264, 348, 488, 612, 954, 969
MboI GATC 9 cut(s) 109, 126, 221, 262, 346, 486, 610, 952, 967
MboII GAAGA 7 cut(s) 35, 67, 121, 231, 440, 560, 563
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 2 cut(s) 952, 967
MhlI GDGCHC 2 cut(s) 256, 949
MlsI TGGCCA 1 cut(s) 1010
MluCI AATT 3 cut(s) 305, 616, 777
MluNI TGGCCA 1 cut(s) 1010
MlyI GAGTC 1 cut(s) 968
MmeI TCCRAC 2 cut(s) 229, 710
Mox20I TGGCCA 1 cut(s) 1010
MroXI GAANNNNTTC 1 cut(s) 318
MscI TGGCCA 1 cut(s) 1010
MseI TTAA 4 cut(s) 639, 897, 915, 1059
MslI CAYNNNNRTG 1 cut(s) 229
Msp20I TGGCCA 1 cut(s) 1010
MspA1I CMGCKG 1 cut(s) 425
MspCI CTTAAG 2 cut(s) 638, 896
MspI CCGG 4 cut(s) 512, 571, 786, 965
MspR9I CCNGG 3 cut(s) 786, 965, 1043
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 1 cut(s) 1043
MwoI GCNNNNNNNGC 2 cut(s) 251, 684
NciI CCSGG 2 cut(s) 786, 965
NcoI CCATGG 1 cut(s) 9
NdeI CATATG 1 cut(s) 744
NdeII GATC 9 cut(s) 109, 126, 221, 262, 346, 486, 610, 952, 967
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 6 cut(s) 13, 234, 269, 334, 508, 1033
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 177
NspI RCATGY 1 cut(s) 508
PagI TCATGA 2 cut(s) 265, 1029
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 4 cut(s) 314, 602, 739, 870
PinAI ACCGGT 2 cut(s) 511, 570
PkrI GCNGC 2 cut(s) 424, 997
PleI GAGTC 1 cut(s) 967
PpsI GAGTC 1 cut(s) 967
PshAI GACNNNNGTC 1 cut(s) 1025
Psp1406I AACGTT 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 1041
PspGI CCWGG 1 cut(s) 1041
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 175, 1039
PsuI RGATCY 2 cut(s) 952, 967
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 5 cut(s) 527, 825, 1072, 1084, 1090
RsaNI GTAC 5 cut(s) 526, 824, 1071, 1083, 1089
RseI CAYNNNNRTG 1 cut(s) 229
SaqAI TTAA 4 cut(s) 639, 897, 915, 1059
SatI GCNGC 2 cut(s) 423, 996
Sau3AI GATC 9 cut(s) 109, 126, 221, 262, 346, 486, 610, 952, 967
Sau96I GGNCC 2 cut(s) 175, 1039
ScaI AGTACT 3 cut(s) 825, 1084, 1090
SchI GAGTC 1 cut(s) 968
ScrFI CCNGG 3 cut(s) 786, 965, 1043
SduI GDGCHC 2 cut(s) 256, 949
SfaNI GCATC 1 cut(s) 894
SfcI CTRYAG 1 cut(s) 1023
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 229
SmlI CTYRAG 3 cut(s) 638, 896, 956
SmoI CTYRAG 3 cut(s) 638, 896, 956
SpeI ACTAGT 1 cut(s) 1085
Sse9I AATT 3 cut(s) 305, 616, 777
SsiI CCGC 5 cut(s) 134, 411, 670, 852, 1037
SspMI CTAG 6 cut(s) 87, 165, 684, 929, 971, 1086
StyD4I CCNGG 3 cut(s) 784, 963, 1041
StyI CCWWGG 4 cut(s) 9, 164, 405, 597
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 3 cut(s) 564, 803, 1008
TaqI TCGA 2 cut(s) 312, 605
TaqII GACCGA 1 cut(s) 312
TasI AATT 3 cut(s) 305, 616, 777
TatI WGTACW 3 cut(s) 823, 1082, 1088
TfiI GAWTC 4 cut(s) 314, 602, 739, 870
Tru1I TTAA 4 cut(s) 639, 897, 915, 1059
Tru9I TTAA 4 cut(s) 639, 897, 915, 1059
TscAI CASTG 2 cut(s) 708, 981
TseI GCWGC 2 cut(s) 422, 995
TspDTI ATGAA 3 cut(s) 35, 319, 731
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 2 cut(s) 708, 981
Vha464I CTTAAG 2 cut(s) 638, 896
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 508
XmaJI CCTAGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 6 cut(s) 87, 165, 684, 929, 971, 1086
ZrmI AGTACT 3 cut(s) 825, 1084, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.