Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002416.1

Orthogroup ID

OG0018066

Physical Location & Seq

Genomic Coordinates Reverse (-)

39796 .. 40590

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002416.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgtttggcgatggcgatccaaatagggtaacgaaagaggagagatggaagttgattgggcaatacataacctccaagggcggtgttgttgcagctgaagaacttgctccatatcttgaccctttagaaactaaagggaaaaatgagagccttcagatcaacgacgaaacatacatgctaccggttctgatgaggtacgagggtcatcccgtgattgaagaagacggaaacgttctatacctgtttatatctctgcaacccacagccaaggaatcgagtgatcctaattttgtcaaaggtgcactacttaagaaaaagtttttcatggagaataagtggtggttcagcaaggctagcactttggagaaggcagtgattgtagggtttggtggactttgttggaaagggattcagatgcttaccgagggtttgcttctggaaactccaattgcccccggtggttatgttacatttttctctgcaatgcttccagtacttcaggcttgtgttatttccatcaccgctattccttcgttgagattcgttttgttttgcatcattttccttaagagaaatgctgatattaagaaaagaaatctggcaagacagcgatgtgctcgggatcttgagtccccggatctagcactgagacaaaagctccaagctgctcgggacatggccaaaaggttgactatagtcatgactgcgggccaggaggatatgcctgttaatgtctatggtactaataggagtactagtactaacagaagcagggatttggttgaggacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.67

Weight (kDa)

8.57

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018066)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48690
rosa_chinensis	RchiOBHm_Chr2g0168601
rosa_laevigata	RLG00000021790
rosa_multiflora	Rmu_sc0002416.1_g000011
rosa_roxburghii	Rroxscaffold_2G00082840
rosa_rugosa	Rorug02G0534200
rosa_samantha	Rh2AG604700 Rh2BG617700 Rh2CG585900 Rh2DG628300
rosa_wichuraiana	Rw2G050120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	81, 522, 707
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	4 cut(s)	11, 275, 630, 645
AcoI	YGGCCR	1 cut(s)	678
AcuI	CTGAAG	3 cut(s)	117, 137, 482
AfaI	GTAC	5 cut(s)	197, 495, 742, 754, 760
AflII	CTTAAG	2 cut(s)	308, 566
AgeI	ACCGGT	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	218
AhlI	ACTAGT	1 cut(s)	755
AjnI	CCWGG	1 cut(s)	711
AluBI	AGCT	3 cut(s)	95, 658, 665
AluI	AGCT	3 cut(s)	95, 658, 665
Alw21I	GWGCWC	2 cut(s)	304, 619
Alw26I	GTCTC	1 cut(s)	643
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	4 cut(s)	11, 275, 630, 645
Ama87I	CYCGRG	2 cut(s)	618, 669
AoxI	GGCC	2 cut(s)	678, 709
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	92, 665
AsiGI	ACCGGT	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	709
AsuC2I	CCSGG	2 cut(s)	456, 635
AsuHPI	GGTGA	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	353
AvaI	CYCGRG	2 cut(s)	618, 669
BaeGI	GKGCMC	1 cut(s)	304
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BalI	TGGCCA	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	304, 619
BbvI	GCAGC	2 cut(s)	104, 652
BccI	CCATC	3 cut(s)	5, 39, 524
BciT130I	CCWGG	1 cut(s)	713
BcnI	CCSGG	2 cut(s)	456, 635
BcoDI	GTCTC	1 cut(s)	643
BcuI	ACTAGT	1 cut(s)	755
BfaI	CTAG	3 cut(s)	354, 641, 756
BfmI	CTRYAG	1 cut(s)	693
BfrI	CTTAAG	2 cut(s)	308, 566
BisI	GCNGC	2 cut(s)	93, 666
BlsI	GCNGC	2 cut(s)	94, 667
BmcAI	AGTACT	3 cut(s)	495, 754, 760
Bme1390I	CCNGG	3 cut(s)	456, 635, 713
BmeT110I	CYCGRG	2 cut(s)	618, 669
BmgT120I	GGNCC	1 cut(s)	709
BmrFI	CCNGG	3 cut(s)	456, 635, 713
BmsI	GCATC	2 cut(s)	405, 564
BmtI	GCTAGC	1 cut(s)	357
BoxI	GACNNNNGTC	1 cut(s)	695
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	2 cut(s)	456, 635
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	5 cut(s)	75, 267, 423, 454, 633
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	8 cut(s)	56, 86, 320, 350, 642, 672, 742, 772
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	713
BseDI	CCNNGG	5 cut(s)	75, 267, 423, 454, 633
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	104, 652
BshFI	GGCC	2 cut(s)	680, 711
BshTI	ACCGGT	1 cut(s)	181
BsiHKAI	GWGCWC	2 cut(s)	304, 619
BsiHKCI	CYCGRG	2 cut(s)	618, 669
BsiSI	CCGG	3 cut(s)	182, 456, 635
BslFI	GGGAC	2 cut(s)	616, 686
BsmAI	GTCTC	1 cut(s)	643
BsmFI	GGGAC	2 cut(s)	616, 686
BsnI	GGCC	2 cut(s)	680, 711
BsoBI	CYCGRG	2 cut(s)	618, 669
Bsp1286I	GDGCHC	2 cut(s)	304, 619
Bsp143I	GATC	5 cut(s)	16, 156, 280, 622, 637
BspACI	CCGC	3 cut(s)	81, 522, 707
BspANI	GGCC	2 cut(s)	680, 711
BspCNI	CTCAG	1 cut(s)	639
BspHI	TCATGA	1 cut(s)	699
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	4 cut(s)	11, 275, 630, 645
BspTI	CTTAAG	2 cut(s)	308, 566
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	5 cut(s)	75, 267, 423, 454, 633
BssMI	GATC	5 cut(s)	16, 156, 280, 622, 637
BssT1I	CCWWGG	2 cut(s)	75, 267
Bst2UI	CCWGG	1 cut(s)	713
BstAFI	CTTAAG	2 cut(s)	308, 566
BstC8I	GCNNGC	2 cut(s)	355, 709
BstDEI	CTNAG	1 cut(s)	647
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	5 cut(s)	19, 159, 283, 625, 640
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	5 cut(s)	16, 156, 280, 622, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstNI	CCWGG	1 cut(s)	713
BstNSI	RCATGY	1 cut(s)	178
BstPAI	GACNNNNGTC	1 cut(s)	695
BstSCI	CCNGG	3 cut(s)	454, 633, 711
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	104, 652
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	622, 637
BstYI	RGATCY	2 cut(s)	622, 637
BsuRI	GGCC	2 cut(s)	680, 711
BtgZI	GCGATG	2 cut(s)	24, 625
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	378, 644
Cac8I	GCNNGC	2 cut(s)	355, 709
CciI	TCATGA	1 cut(s)	699
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	709
Csp6I	GTAC	5 cut(s)	196, 494, 741, 753, 759
CspAI	ACCGGT	1 cut(s)	181
CviAII	CATG	4 cut(s)	175, 325, 676, 700
CviJI	RGCY	9 cut(s)	95, 150, 266, 353, 503, 658, 665, 680, 711
CviKI_1	RGCY	9 cut(s)	95, 150, 266, 353, 503, 658, 665, 680, 711
CviQI	GTAC	5 cut(s)	196, 494, 741, 753, 759
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	5 cut(s)	18, 158, 282, 624, 639
DpnII	GATC	5 cut(s)	16, 156, 280, 622, 637
EaeI	YGGCCR	1 cut(s)	678
Eco130I	CCWWGG	2 cut(s)	75, 267
Eco57I	CTGAAG	3 cut(s)	117, 137, 482
Eco88I	CYCGRG	2 cut(s)	618, 669
EcoRII	CCWGG	1 cut(s)	711
EcoT14I	CCWWGG	2 cut(s)	75, 267
ErhI	CCWWGG	2 cut(s)	75, 267
FaeI	CATG	4 cut(s)	178, 328, 679, 703
FaqI	GGGAC	2 cut(s)	616, 686
FatI	CATG	4 cut(s)	174, 324, 675, 699
FauI	CCCGC	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	93, 666
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	93, 666
FspBI	CTAG	3 cut(s)	354, 641, 756
GluI	GCNGC	2 cut(s)	93, 666
HaeIII	GGCC	2 cut(s)	680, 711
HapII	CCGG	3 cut(s)	182, 456, 635
Hin1II	CATG	4 cut(s)	178, 328, 679, 703
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HinfI	GANTC	4 cut(s)	272, 409, 540, 629
HpaII	CCGG	3 cut(s)	182, 456, 635
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	3 cut(s)	302, 392, 690
Hpy188I	TCNGA	3 cut(s)	156, 189, 414
Hpy188III	TCNNGA	6 cut(s)	116, 437, 620, 626, 671, 700
Hpy8I	GTNNAC	3 cut(s)	302, 392, 690
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	161, 361, 540
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	5 cut(s)	92, 256, 302, 482, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpyF3I	CTNAG	1 cut(s)	647
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	178, 328, 679, 703
Kzo9I	GATC	5 cut(s)	16, 156, 280, 622, 637
LmnI	GCTCC	2 cut(s)	112, 663
Lsp1109I	GCAGC	2 cut(s)	104, 652
LweI	GCATC	2 cut(s)	405, 564
MaeI	CTAG	3 cut(s)	354, 641, 756
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	28, 466
MalI	GATC	5 cut(s)	18, 158, 282, 624, 639
MboI	GATC	5 cut(s)	16, 156, 280, 622, 637
MboII	GAAGA	3 cut(s)	110, 230, 233
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	2 cut(s)	622, 637
MhlI	GDGCHC	2 cut(s)	304, 619
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	2 cut(s)	286, 447
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	7 cut(s)	31, 82, 186, 193, 418, 709, 778
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	4 cut(s)	309, 567, 585, 729
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	95
MspCI	CTTAAG	2 cut(s)	308, 566
MspI	CCGG	3 cut(s)	182, 456, 635
MspR9I	CCNGG	3 cut(s)	456, 635, 713
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	713
MwoI	GCNNNNNNNGC	1 cut(s)	354
NciI	CCSGG	2 cut(s)	456, 635
NdeII	GATC	5 cut(s)	16, 156, 280, 622, 637
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	4 cut(s)	178, 328, 679, 703
NspI	RCATGY	1 cut(s)	178
PagI	TCATGA	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	272, 409, 540
PinAI	ACCGGT	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	94, 667
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PshAI	GACNNNNGTC	1 cut(s)	695
Psp1406I	AACGTT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	711
PspPI	GGNCC	1 cut(s)	709
PsuI	RGATCY	2 cut(s)	622, 637
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	5 cut(s)	197, 495, 742, 754, 760
RsaNI	GTAC	5 cut(s)	196, 494, 741, 753, 759
SaqAI	TTAA	4 cut(s)	309, 567, 585, 729
SatI	GCNGC	2 cut(s)	93, 666
Sau3AI	GATC	5 cut(s)	16, 156, 280, 622, 637
Sau96I	GGNCC	1 cut(s)	709
ScaI	AGTACT	3 cut(s)	495, 754, 760
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	3 cut(s)	456, 635, 713
SduI	GDGCHC	2 cut(s)	304, 619
SetI	ASST	9 cut(s)	74, 97, 197, 234, 243, 301, 660, 667, 689
SfaNI	GCATC	2 cut(s)	405, 564
SfcI	CTRYAG	1 cut(s)	693
SmlI	CTYRAG	3 cut(s)	308, 566, 626
SmoI	CTYRAG	3 cut(s)	308, 566, 626
SpeI	ACTAGT	1 cut(s)	755
Sse9I	AATT	2 cut(s)	286, 447
SsiI	CCGC	3 cut(s)	81, 522, 707
SspMI	CTAG	3 cut(s)	354, 641, 756
StyD4I	CCNGG	3 cut(s)	454, 633, 711
StyI	CCWWGG	2 cut(s)	75, 267
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	275
TasI	AATT	2 cut(s)	286, 447
TatI	WGTACW	3 cut(s)	493, 752, 758
TfiI	GAWTC	3 cut(s)	272, 409, 540
Tru1I	TTAA	4 cut(s)	309, 567, 585, 729
Tru9I	TTAA	4 cut(s)	309, 567, 585, 729
TscAI	CASTG	2 cut(s)	378, 651
TseI	GCWGC	2 cut(s)	92, 665
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	378, 651
Vha464I	CTTAAG	2 cut(s)	308, 566
VneI	GTGCAC	1 cut(s)	300
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	3 cut(s)	354, 641, 756
ZrmI	AGTACT	3 cut(s)	495, 754, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.