Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016906

Physical Location & Seq

Genomic Coordinates Forward (+)

37238485 .. 37241433

Gene Structure 2949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGACTCAATCTCCTCCTCATGCTCTCCTGCTATCCCCAAAGACTTGGCCAAGAAGAAGAGGACGAACCGGTTAGCGAAATTGAAGCAGAGCAAGCTCGATGTTCGCCGTGAGCAGTGGCTTTCACATGTCAAGAATAAAGGGCACAAGGTGAACTCTGATCGGAATGAAGGATCTCCTACATCATTCATGCATGTAGATAATGAACGGAAAATATTATTGGACAATTTGGAAACAAGTTCAACAGGAGGTTCAATTGATAATTCAAGCATCCATGACAGTGATGTGGAGTCTCTAATGAACAGCCCTTGTGAAAGCAGTTTGGATCGTAGTGATTCGGTAAAGAATCTTAACGAGAGCAGCAATGGTGGTTGCCCAGAAAATGTCAGCAAGGAGGACCCAGACGATGGATGTCTGGATGACTGGGAGGCTGTGGCAGATGCTTTAACTGCAGATGACAATCAACATAACAATCTGTTTGGTTTTCCTGCCACAACTGAAATGAGGGTTGAACCCACGGGTCCGGAACTCTGTATTGAGAATCCTGTAGCCGAGTTATCAAAACCAGAGAACAGAAACATAGTTCCCGAGTCACGAGTGAACACGTGTGCTTGGAGGCCTAACGATGCTTCCCGTCCTCAGAGTCTGCCAAACTTGTCAAAGGAGCATAGTTTCCCGGTGCAGTCAGACTGGCATTGTGGTCATGGAGCCATTGCATGGACTTGGCAAAGCATTGTTCCCCAGCCTTCGTCATGTCCTATATGCTATGAGGATTTAGATATCACAGACTCAAGCTTTCTTCCATGTTCATGTGGTTTCCGGCTATGCCTCTTTTGTCACAAAAGGATTTTAGAGGCAGATGGGAGATGTCCAGGCTGCAGGAAGCAGTATGATCGTGTAAATGAGGTCATGAGCTTTAATGGAGGAGCTACAACTTTTAGAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

317

Amino Acids

35.01

Weight (kDa)

5.25

Isoelectric Point (pI)

63.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	252 - 298	1.4e-18	RING/Ubox like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49800 FvH4_6g49800
malus_domestica	MD09G1041200.v1.1
prunus_persica	Prupe.3G276400_v2.0.a1
pyrus_communis	pycom111g03220
rosa_chinensis	RchiOBHm_Chr2g0169941
rosa_laevigata	RLG00000021912
rosa_roxburghii	Rroxscaffold_2G00081710
rosa_rugosa	Rorug02G0544500
rosa_samantha	Rh2AG616600 Rh2BG628400 Rh2CG597700 Rh2DG639400
rosa_wichuraiana	Rw2G051070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	407, 717
AccIII	TCCGGA	1 cut(s)	523
AclWI	GGATC	2 cut(s)	181, 333
AcoI	YGGCCR	1 cut(s)	48
AcvI	CACGTG	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	407, 717
AflIII	ACRYGT	3 cut(s)	127, 603, 605
AgeI	ACCGGT	1 cut(s)	69
AgsI	TTSAA	5 cut(s)	85, 243, 255, 267, 512
AjnI	CCWGG	1 cut(s)	871
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	5 cut(s)	97, 795, 915, 929, 947
AluI	AGCT	5 cut(s)	97, 795, 915, 929, 947
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	181, 333
AlwNI	CAGNNNCTG	1 cut(s)	646
Ama87I	CYCGRG	1 cut(s)	587
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	2 cut(s)	48, 617
ApeKI	GCWGC	2 cut(s)	360, 876
AsiGI	ACCGGT	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	397, 521
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	397, 521
BaeGI	GKGCMC	1 cut(s)	147
BalI	TGGCCA	1 cut(s)	50
BauI	CACGAG	1 cut(s)	594
BbrPI	CACGTG	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	372, 863
BccI	CCATC	2 cut(s)	401, 854
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	1 cut(s)	873
BcnI	CCSGG	1 cut(s)	677
BcoDI	GTCTC	1 cut(s)	297
BfmI	CTRYAG	3 cut(s)	450, 546, 877
BisI	GCNGC	2 cut(s)	361, 877
BlsI	GCNGC	2 cut(s)	362, 878
Bme1390I	CCNGG	2 cut(s)	677, 873
Bme18I	GGWCC	2 cut(s)	397, 521
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	2 cut(s)	397, 521
BmiI	GGNNCC	3 cut(s)	399, 522, 709
BmrFI	CCNGG	2 cut(s)	677, 873
BmrI	ACTGGG	1 cut(s)	433
BmsI	GCATC	3 cut(s)	279, 430, 616
BmuI	ACTGGG	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	775
BpuMI	CCSGG	1 cut(s)	677
BsaAI	YACGTR	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	2 cut(s)	69, 523
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 717
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	2 cut(s)	428, 695
Bse3DI	GCAATG	2 cut(s)	370, 711
Bse8I	GATNNNNATC	1 cut(s)	459
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	873
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	3 cut(s)	270, 416, 424
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	407, 717
BseMI	GCAATG	2 cut(s)	370, 711
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	2 cut(s)	428, 695
BseRI	GAGGAG	3 cut(s)	4, 7, 939
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	372, 863
BseYI	CCCAGC	1 cut(s)	741
BsgI	GTGCAG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	50, 619
BshTI	ACCGGT	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	4 cut(s)	70, 524, 677, 820
BslI	CCNNNNNNNGG	2 cut(s)	407, 717
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	50, 619
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp13I	TCCGGA	1 cut(s)	523
Bsp143I	GATC	4 cut(s)	160, 173, 325, 892
BspANI	GGCC	2 cut(s)	50, 619
BspCNI	CTCAG	1 cut(s)	652
BspEI	TCCGGA	1 cut(s)	523
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	3 cut(s)	399, 522, 709
BspMAI	CTGCAG	2 cut(s)	454, 881
BspPI	GGATC	2 cut(s)	181, 333
BsrDI	GCAATG	2 cut(s)	370, 711
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	428, 695
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	4 cut(s)	160, 173, 325, 892
BssSI	CACGAG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	639
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	270, 416, 424
BstKTI	GATC	4 cut(s)	163, 176, 328, 895
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	4 cut(s)	160, 173, 325, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 449
BstNI	CCWGG	1 cut(s)	873
BstNSI	RCATGY	2 cut(s)	131, 197
BstSCI	CCNGG	2 cut(s)	675, 871
BstSFI	CTRYAG	3 cut(s)	450, 546, 877
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	372, 863
BstX2I	RGATCY	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	50, 619
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	270, 416, 424
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	122, 286
Cac8I	GCNNGC	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	646
CciI	TCATGA	1 cut(s)	909
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	397, 521
CspAI	ACCGGT	1 cut(s)	69
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	4 cut(s)	162, 175, 327, 894
DpnII	GATC	4 cut(s)	160, 173, 325, 892
DraIII	CACNNNGTG	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	619
Eco32I	GATATC	1 cut(s)	781
Eco47I	GGWCC	2 cut(s)	397, 521
Eco72I	CACGTG	1 cut(s)	606
Eco88I	CYCGRG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	871
EcoRV	GATATC	1 cut(s)	781
EcoT22I	ATGCAT	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	361, 877
FokI	GGATG	3 cut(s)	257, 423, 431
Fsp4HI	GCNGC	2 cut(s)	361, 877
GluI	GCNGC	2 cut(s)	361, 877
GsaI	CCCAGC	1 cut(s)	745
HaeIII	GGCC	2 cut(s)	50, 619
HapII	CCGG	4 cut(s)	70, 524, 677, 820
HindIII	AAGCTT	1 cut(s)	793
HinfI	GANTC	8 cut(s)	5, 290, 335, 346, 541, 590, 643, 788
HpaII	CCGG	4 cut(s)	70, 524, 677, 820
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	154, 601
Hpy188I	TCNGA	4 cut(s)	160, 165, 642, 688
Hpy188III	TCNNGA	6 cut(s)	133, 416, 524, 587, 594, 910
Hpy8I	GTNNAC	2 cut(s)	154, 601
HpyAV	CCTTC	2 cut(s)	164, 756
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	5 cut(s)	193, 452, 682, 716, 879
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 449
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	1 cut(s)	605
Kpn2I	TCCGGA	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	160, 173, 325, 892
LmnI	GCTCC	3 cut(s)	664, 707, 926
Lsp1109I	GCAGC	2 cut(s)	372, 863
LweI	GCATC	3 cut(s)	279, 430, 616
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	2 cut(s)	591, 836
MalI	GATC	4 cut(s)	162, 175, 327, 894
MboI	GATC	4 cut(s)	160, 173, 325, 892
MboII	GAAGA	3 cut(s)	67, 70, 791
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	4 cut(s)	80, 226, 255, 262
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	4 cut(s)	299, 599, 652, 782
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	195
MroI	TCCGGA	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	3 cut(s)	351, 446, 918
MslI	CAYNNNNRTG	2 cut(s)	279, 808
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	4 cut(s)	70, 524, 677, 820
MspR9I	CCNGG	2 cut(s)	677, 873
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	873
MwoI	GCNNNNNNNGC	2 cut(s)	94, 449
NciI	CCSGG	1 cut(s)	677
NdeII	GATC	4 cut(s)	160, 173, 325, 892
NlaIV	GGNNCC	3 cut(s)	399, 522, 709
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	2 cut(s)	591, 836
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	2 cut(s)	131, 197
PagI	TCATGA	1 cut(s)	909
PceI	AGGCCT	1 cut(s)	619
PciI	ACATGT	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	335, 346, 541
PflMI	CCANNNNNTGG	2 cut(s)	407, 717
PinAI	ACCGGT	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	362, 878
PleI	GAGTC	4 cut(s)	298, 598, 651, 782
PmaCI	CACGTG	1 cut(s)	606
PmlI	CACGTG	1 cut(s)	606
PpsI	GAGTC	4 cut(s)	298, 598, 651, 782
Ppu21I	YACGTR	1 cut(s)	606
PpuMI	RGGWCCY	1 cut(s)	397
PscI	ACATGT	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	871
PspCI	CACGTG	1 cut(s)	606
PspFI	CCCAGC	1 cut(s)	741
PspGI	CCWGG	1 cut(s)	871
PspN4I	GGNNCC	3 cut(s)	399, 522, 709
PspPI	GGNCC	2 cut(s)	397, 521
PspPPI	RGGWCCY	1 cut(s)	397
PstI	CTGCAG	2 cut(s)	454, 881
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	173
RseI	CAYNNNNRTG	2 cut(s)	279, 808
SaqAI	TTAA	3 cut(s)	351, 446, 918
SatI	GCNGC	2 cut(s)	361, 877
Sau3AI	GATC	4 cut(s)	160, 173, 325, 892
Sau96I	GGNCC	2 cut(s)	397, 521
SchI	GAGTC	4 cut(s)	299, 599, 652, 782
ScrFI	CCNGG	2 cut(s)	677, 873
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	9 cut(s)	99, 153, 253, 608, 797, 909, 917, 931, 949
SfaNI	GCATC	3 cut(s)	279, 430, 616
SfcI	CTRYAG	3 cut(s)	450, 546, 877
SinI	GGWCC	2 cut(s)	397, 521
SmiMI	CAYNNNNRTG	2 cut(s)	279, 808
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
Sse9I	AATT	4 cut(s)	80, 226, 255, 262
SseBI	AGGCCT	1 cut(s)	619
SspI	AATATT	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	619
StyD4I	CCNGG	2 cut(s)	675, 871
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	608
TaqI	TCGA	1 cut(s)	99
TasI	AATT	4 cut(s)	80, 226, 255, 262
TfiI	GAWTC	3 cut(s)	335, 346, 541
Tru1I	TTAA	3 cut(s)	351, 446, 918
Tru9I	TTAA	3 cut(s)	351, 446, 918
TscAI	CASTG	2 cut(s)	122, 286
TseFI	GTSAC	2 cut(s)	591, 836
TseI	GCWGC	2 cut(s)	360, 876
Tsp45I	GTSAC	2 cut(s)	591, 836
TspDTI	ATGAA	5 cut(s)	178, 183, 219, 314, 798
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	2 cut(s)	122, 286
Van91I	CCANNNNNTGG	2 cut(s)	407, 717
VpaK11BI	GGWCC	2 cut(s)	397, 521
XceI	RCATGY	2 cut(s)	131, 197
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.