MD09G1041200.v1.1

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016906
Physical Location & Seq
Reverse (-)
2648667 .. 2651383
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1041200.v1.1.491

Sequence Viewer

Length: 951 bp
ATGAGTTCGGGTTCAATCTCCTGCTCTCCTGTCGTCACCAAAGACTTGGCCAAGAAGAAGAGGACGAACAGGTTGGCGAAATTGAAGCAGAGCAAGCTCGATGTTCGCCGCGAGCAATGGCTTTCACATGTCAAGAATAAAGGGCACAAAGTGAACTTGGATGGGAGGGGTGGGTCTCCTACACCATCTAGGCAAGTAGAGAAAGGGCAAAATGGATCATTGGACAATTTGGAAACGAATTCAACCGGAGGAGAGAATGACAATTCGAGCATCCATGACAGCGATTTGGAGTCTCTGACAACCAGTCCGAGTGGAAGCAGTTTGGATTGTAATGATTCGATGAAGAATCTTAGTGAGAGCAGTGGAAGAAATTGTTCGGGAACTGTCAGCAAGGAGGATGCTGATGATGGGTGTCTAGATGACTGGGAGGCTGTGGCCGATGCTTTAAATGCAGAGGACAACAAGCATACCCCTCTTACTGATTTTCCTTCCAAAGCGGAAATCACAGTTGAACCCACAGTTCTTAAACTATCTAGCGAGAATCCTGGAGTTGAATTATCAAATCCAGAGGATAGAAACATGGTTCCTGGGTCACATACGGCGCGTTGTGCTTGGAGACCTGATGATGCTTCCCGTCCTCAGAGTCTGCCCAATGTGCCAAAACAGCATAGTTTCATGGTGCAATCAGACTGGCATTGTGGCCATGGAACCATTGCATGGGCATGGCAAAACATCGTGCCCCAGCCTTCTTCATGTCCTATATGCTATGAGGATTTAGATGTCACAGACTCGAGCTTTATTCCGTGTTCATGCGGCTTTCGCCTTTGCCTCTTTTGCCACAAAAGGATTCTAGAGGCAGACGGGCGCTGTCCAGGCTGCAGGAAGCAGTACGATCATGGAAACGGAGCAATGAGCATCAACAGAGGAGCTACAACTTTTAGAGTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

317

Amino Acids

34.4

Weight (kDa)

5.94

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 252 - 298 2.5e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016906)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g49800 FvH4_6g49800
malus_domestica MD09G1041200.v1.1
prunus_persica Prupe.3G276400_v2.0.a1
pyrus_communis pycom111g03220
rosa_chinensis RchiOBHm_Chr2g0169941
rosa_laevigata RLG00000021912
rosa_roxburghii Rroxscaffold_2G00081710
rosa_rugosa Rorug02G0544500
rosa_samantha Rh2AG616600 Rh2BG628400 Rh2CG597700 Rh2DG639400
rosa_wichuraiana Rw2G051070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 717
AccII CGCG 2 cut(s) 111, 604
AciI CCGC 3 cut(s) 109, 497, 813
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 3 cut(s) 48, 435, 700
AcsI RAATTY 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 1 cut(s) 890
AfiI CCNNNNNNNGG 1 cut(s) 717
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 5 cut(s) 15, 85, 243, 512, 554
AhdI GACNNNNNGTC 1 cut(s) 303
AjnI CCWGG 3 cut(s) 544, 586, 871
AluBI AGCT 3 cut(s) 97, 795, 929
AluI AGCT 3 cut(s) 97, 795, 929
Alw26I GTCTC 3 cut(s) 180, 297, 610
AlwI GGATC 1 cut(s) 223
AlwNI CAGNNNCTG 1 cut(s) 646
Ama87I CYCGRG 1 cut(s) 790
AoxI GGCC 3 cut(s) 48, 435, 700
ApeKI GCWGC 1 cut(s) 876
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 373
AspLEI GCGC 2 cut(s) 604, 867
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 790
BaeGI GKGCMC 2 cut(s) 147, 741
BalI TGGCCA 2 cut(s) 50, 702
BbvI GCAGC 1 cut(s) 863
BccI CCATC 3 cut(s) 155, 193, 401
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 3 cut(s) 546, 588, 873
BcoDI GTCTC 3 cut(s) 180, 297, 610
BfaI CTAG 4 cut(s) 189, 416, 534, 851
BfmI CTRYAG 1 cut(s) 877
BfoI RGCGCY 1 cut(s) 868
BisI GCNGC 3 cut(s) 109, 814, 877
BlsI GCNGC 3 cut(s) 110, 815, 878
Bme1390I CCNGG 3 cut(s) 546, 588, 873
BmeRI GACNNNNNGTC 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 790
BmiI GGNNCC 2 cut(s) 585, 709
BmrFI CCNGG 3 cut(s) 546, 588, 873
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 5 cut(s) 279, 388, 430, 616, 924
BmuI ACTGGG 1 cut(s) 433
BpmI CTGGAG 1 cut(s) 567
BsaI GGTCTC 2 cut(s) 180, 610
BsaJI CCNNGG 2 cut(s) 587, 703
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 717
Bse1I ACTGG 3 cut(s) 303, 428, 695
Bse3DI GCAATG 3 cut(s) 122, 711, 915
BseBI CCWGG 3 cut(s) 546, 588, 873
BseDI CCNNGG 2 cut(s) 587, 703
BseGI GGATG 3 cut(s) 166, 270, 403
BseLI CCNNNNNNNGG 1 cut(s) 717
BseMI GCAATG 3 cut(s) 122, 711, 915
BseMII CTCAG 1 cut(s) 653
BseNI ACTGG 3 cut(s) 303, 428, 695
BseRI GAGGAG 2 cut(s) 264, 939
BseSI GKGCMC 2 cut(s) 147, 741
BseXI GCAGC 1 cut(s) 863
BseYI CCCAGC 1 cut(s) 741
Bsh1236I CGCG 2 cut(s) 111, 604
BshFI GGCC 3 cut(s) 50, 437, 702
BsiHKCI CYCGRG 1 cut(s) 790
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 717
BsmAI GTCTC 3 cut(s) 180, 297, 610
BsnI GGCC 3 cut(s) 50, 437, 702
Bso31I GGTCTC 2 cut(s) 180, 610
BsoBI CYCGRG 1 cut(s) 790
Bsp1286I GDGCHC 2 cut(s) 147, 741
Bsp143I GATC 2 cut(s) 215, 892
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 3 cut(s) 109, 497, 813
BspANI GGCC 3 cut(s) 50, 437, 702
BspCNI CTCAG 1 cut(s) 652
BspFNI CGCG 2 cut(s) 111, 604
BspLI GGNNCC 2 cut(s) 585, 709
BspMAI CTGCAG 1 cut(s) 881
BspPI GGATC 1 cut(s) 223
BspTNI GGTCTC 2 cut(s) 180, 610
BsrDI GCAATG 3 cut(s) 122, 711, 915
BsrI ACTGG 3 cut(s) 303, 428, 695
BssECI CCNNGG 2 cut(s) 587, 703
BssMI GATC 2 cut(s) 215, 892
BssT1I CCWWGG 1 cut(s) 703
Bst2UI CCWGG 3 cut(s) 546, 588, 873
Bst4CI ACNGT 3 cut(s) 385, 508, 520
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 95, 113
BstDEI CTNAG 2 cut(s) 350, 639
BstDSI CCRYGG 1 cut(s) 703
BstF5I GGATG 3 cut(s) 166, 270, 403
BstFNI CGCG 2 cut(s) 111, 604
BstH2I RGCGCY 1 cut(s) 868
BstHHI GCGC 2 cut(s) 604, 867
BstKTI GATC 2 cut(s) 218, 895
BstMAI GTCTC 3 cut(s) 180, 297, 610
BstMBI GATC 2 cut(s) 215, 892
BstMWI GCNNNNNNNGC 8 cut(s) 94, 449, 608, 655, 664, 819, 834, 873
BstNI CCWGG 3 cut(s) 546, 588, 873
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 3 cut(s) 544, 586, 871
BstSFI CTRYAG 1 cut(s) 877
BstSLI GKGCMC 2 cut(s) 147, 741
BstUI CGCG 2 cut(s) 111, 604
BstV1I GCAGC 1 cut(s) 863
BstXI CCANNNNNNTGG 1 cut(s) 46
BsuRI GGCC 3 cut(s) 50, 437, 702
BtgI CCRYGG 1 cut(s) 703
BtsCI GGATG 3 cut(s) 166, 270, 403
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 95, 113
CaiI CAGNNNCTG 1 cut(s) 646
CfoI GCGC 2 cut(s) 604, 867
Csp6I GTAC 1 cut(s) 889
CviQI GTAC 1 cut(s) 889
DdeI CTNAG 2 cut(s) 350, 639
DpnI GATC 2 cut(s) 217, 894
DpnII GATC 2 cut(s) 215, 892
DraI TTTAAA 1 cut(s) 447
DraIII CACNNNGTG 1 cut(s) 151
DriI GACNNNNNGTC 1 cut(s) 303
EaeI YGGCCR 3 cut(s) 48, 435, 700
Eam1104I CTCTTC 1 cut(s) 53
Eam1105I GACNNNNNGTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 703
Eco31I GGTCTC 2 cut(s) 180, 610
Eco88I CYCGRG 1 cut(s) 790
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 3 cut(s) 544, 586, 871
EcoT14I CCWWGG 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 703
Fnu4HI GCNGC 3 cut(s) 109, 814, 877
FokI GGATG 3 cut(s) 173, 257, 410
Fsp4HI GCNGC 3 cut(s) 109, 814, 877
FspBI CTAG 4 cut(s) 189, 416, 534, 851
GlaI GCGC 2 cut(s) 603, 866
GluI GCNGC 3 cut(s) 109, 814, 877
GsaI CCCAGC 1 cut(s) 745
GsuI CTGGAG 1 cut(s) 567
HaeII RGCGCY 1 cut(s) 868
HaeIII GGCC 3 cut(s) 50, 437, 702
HapII CCGG 1 cut(s) 246
HhaI GCGC 2 cut(s) 604, 867
Hin6I GCGC 2 cut(s) 602, 865
HinP1I GCGC 2 cut(s) 602, 865
HinfI GANTC 7 cut(s) 290, 335, 346, 541, 643, 788, 847
HpaII CCGG 1 cut(s) 246
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 4 cut(s) 297, 309, 642, 688
Hpy188III TCNNGA 5 cut(s) 133, 378, 416, 566, 851
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 498, 756
HpyCH4III ACNGT 3 cut(s) 385, 508, 520
HpyCH4V TGCA 4 cut(s) 452, 682, 716, 879
HpyF10VI GCNNNNNNNGC 8 cut(s) 94, 449, 608, 655, 664, 819, 834, 873
HpyF3I CTNAG 2 cut(s) 350, 639
HspAI GCGC 2 cut(s) 602, 865
Kzo9I GATC 2 cut(s) 215, 892
LmnI GCTCC 2 cut(s) 905, 926
Lsp1109I GCAGC 1 cut(s) 863
LweI GCATC 5 cut(s) 279, 388, 430, 616, 924
MaeI CTAG 4 cut(s) 189, 416, 534, 851
MaeIII GTNAC 3 cut(s) 34, 591, 781
MalI GATC 2 cut(s) 217, 894
MboI GATC 2 cut(s) 215, 892
MboII GAAGA 5 cut(s) 67, 70, 355, 378, 741
MhlI GDGCHC 2 cut(s) 147, 741
MlsI TGGCCA 2 cut(s) 50, 702
MluCI AATT 6 cut(s) 80, 226, 238, 262, 370, 554
MluNI TGGCCA 2 cut(s) 50, 702
MlyI GAGTC 3 cut(s) 299, 652, 782
Mox20I TGGCCA 2 cut(s) 50, 702
MroXI GAANNNNTTC 1 cut(s) 373
MscI TGGCCA 2 cut(s) 50, 702
MseI TTAA 2 cut(s) 446, 525
MslI CAYNNNNRTG 1 cut(s) 721
Msp20I TGGCCA 2 cut(s) 50, 702
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 3 cut(s) 546, 588, 873
MvaI CCWGG 3 cut(s) 546, 588, 873
MvnI CGCG 2 cut(s) 111, 604
MwoI GCNNNNNNNGC 8 cut(s) 94, 449, 608, 655, 664, 819, 834, 873
NcoI CCATGG 1 cut(s) 703
NdeII GATC 2 cut(s) 215, 892
NlaIV GGNNCC 2 cut(s) 585, 709
NmuCI GTSAC 3 cut(s) 34, 591, 781
NspI RCATGY 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 790
PciI ACATGT 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 373
PfeI GAWTC 4 cut(s) 335, 346, 541, 847
PflMI CCANNNNNTGG 1 cut(s) 717
PfoI TCCNGGA 1 cut(s) 544
PkrI GCNGC 3 cut(s) 110, 815, 878
PleI GAGTC 3 cut(s) 298, 651, 782
PpsI GAGTC 3 cut(s) 298, 651, 782
PscI ACATGT 1 cut(s) 127
Psp6I CCWGG 3 cut(s) 544, 586, 871
PspFI CCCAGC 1 cut(s) 741
PspGI CCWGG 3 cut(s) 544, 586, 871
PspN4I GGNNCC 2 cut(s) 585, 709
PspXI VCTCGAGB 1 cut(s) 790
PstI CTGCAG 1 cut(s) 881
PstNI CAGNNNCTG 1 cut(s) 646
RsaI GTAC 1 cut(s) 890
RsaNI GTAC 1 cut(s) 889
RseI CAYNNNNRTG 1 cut(s) 721
SaqAI TTAA 2 cut(s) 446, 525
SatI GCNGC 3 cut(s) 109, 814, 877
Sau3AI GATC 2 cut(s) 215, 892
SchI GAGTC 3 cut(s) 299, 652, 782
ScrFI CCNGG 3 cut(s) 546, 588, 873
SduI GDGCHC 2 cut(s) 147, 741
SetI ASST 5 cut(s) 74, 99, 622, 797, 931
SfaNI GCATC 5 cut(s) 279, 388, 430, 616, 924
SfcI CTRYAG 1 cut(s) 877
Sfr274I CTCGAG 1 cut(s) 790
SlaI CTCGAG 1 cut(s) 790
SmiMI CAYNNNNRTG 1 cut(s) 721
SmlI CTYRAG 1 cut(s) 790
SmoI CTYRAG 1 cut(s) 790
Sse9I AATT 6 cut(s) 80, 226, 238, 262, 370, 554
SsiI CCGC 3 cut(s) 109, 497, 813
SspMI CTAG 4 cut(s) 189, 416, 534, 851
StyD4I CCNGG 3 cut(s) 544, 586, 871
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 3 cut(s) 385, 508, 520
TaqI TCGA 4 cut(s) 99, 266, 338, 791
TasI AATT 6 cut(s) 80, 226, 238, 262, 370, 554
TauI GCSGC 2 cut(s) 111, 816
TfiI GAWTC 4 cut(s) 335, 346, 541, 847
Tru1I TTAA 2 cut(s) 446, 525
Tru9I TTAA 2 cut(s) 446, 525
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 3 cut(s) 34, 591, 781
TseI GCWGC 1 cut(s) 876
Tsp45I GTSAC 3 cut(s) 34, 591, 781
TspDTI ATGAA 4 cut(s) 356, 664, 741, 798
TspGWI ACGGA 2 cut(s) 792, 918
TspRI CASTG 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 717
XapI RAATTY 1 cut(s) 238
XbaI TCTAGA 2 cut(s) 415, 850
XceI RCATGY 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 790
XmnI GAANNNNTTC 1 cut(s) 373
XspI CTAG 4 cut(s) 189, 416, 534, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.