Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016906

Physical Location & Seq

Genomic Coordinates Forward (+)

77355628 .. 77357784

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG597700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATTCTATCTCTTCCTGCTCTCCTGTTATCCCCAAGGACCTGGCCAAGAAGAAGAGGACGAACCGGTTAGCGAAATTGAAGCAGAGCAAGCTCGATGTTCGCCGTGAGCAGTGGCTTTCACATGTCAAAAATAAAGGGCACAAGGTGAATGCTGATCGGAGTGATGGATCTCCTACATCATTTATTCACGTAGATAATGAGCGAAAAATATTATTGGACAATCTGGAAACAAGTTCAACAGGAGGGTCAATTGATAATTCAAGCATCCATGACAGTGATGTGGAGTCTTTGCTGAACAGCCCTTGTGGAAGCAGTTTCAATCGAAGTGATTCAGTAAAGAATCTTAATGAGAGCAGGAACAGTGGGTGCTCTGAAAATGTCAGCAAGGAGGACGCAGACGATGGGTGTCTGGATGACTGGGAGGCTGTGGCAGATGCTTTGACTGCAGATGACAATCAACATAACCATCTGTTTGGTTTTCCTGCCACAACTGAAGTGAGGGTTGAACCCACGGGTCCAGAACTCTGTATTAAGAATACTGGAGCAGAGTTATCAAAACCAGAGAACGGAAACCTAGGTCCCGAGTCACGAGTGAACACTTGTGCTTGGAGACCTGACGATGCTTCCCGTCCTCAGAGTCTGCCAAACTTGTCAAAGGAGCATAGTTTCCCAGTGCAGTCAGACTGGCATTGTGGTCATGGAACCATTGCCTGGACATGGCAAAGCATTGTTCCCCAGCCTTCGTCATGTCCTATATGCTATGAGGATTTAGATATCACAGACTCAAGCTTTCTTCCATGTTCATGTGGCTTCCGGCTATGTCTCTTTTGTCACAAAAGGATTTTAGAGGCAGATGGGAGATGTCCAGGCTGCAGGAAGCAGTATGATCGTGTAAATGAGGTTATGAGCTTTAATGGAGGAGCTACAACTTTTAGAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

315

Amino Acids

34.73

Weight (kDa)

5.59

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	251 - 297	1.4e-18	RING/Ubox like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49800 FvH4_6g49800
malus_domestica	MD09G1041200.v1.1
prunus_persica	Prupe.3G276400_v2.0.a1
pyrus_communis	pycom111g03220
rosa_chinensis	RchiOBHm_Chr2g0169941
rosa_laevigata	RLG00000021912
rosa_roxburghii	Rroxscaffold_2G00081710
rosa_rugosa	Rorug02G0544500
rosa_samantha	Rh2AG616600 Rh2BG628400 Rh2CG597700 Rh2DG639400
rosa_wichuraiana	Rw2G051070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	714
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	516
AdeI	CACNNNGTG	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	569, 714, 720
AflIII	ACRYGT	1 cut(s)	124
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	5 cut(s)	82, 240, 264, 322, 509
AjnI	CCWGG	3 cut(s)	42, 713, 868
AluBI	AGCT	5 cut(s)	94, 792, 912, 926, 944
AluI	AGCT	5 cut(s)	94, 792, 912, 926, 944
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	607, 830
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	643
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	873
AsiGI	ACCGGT	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	331
AspA2I	CCTAGG	1 cut(s)	577
AspS9I	GGNCC	3 cut(s)	40, 518, 581
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	3 cut(s)	40, 518, 581
AvrII	CCTAGG	1 cut(s)	577
BaeGI	GKGCMC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	47
BauI	CACGAG	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	860
BccI	CCATC	4 cut(s)	161, 398, 477, 851
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	3 cut(s)	44, 715, 870
BcoDI	GTCTC	2 cut(s)	607, 830
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	2 cut(s)	447, 874
BisI	GCNGC	1 cut(s)	874
BlnI	CCTAGG	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	875
Bme1390I	CCNGG	3 cut(s)	44, 715, 870
Bme18I	GGWCC	3 cut(s)	40, 518, 581
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	3 cut(s)	40, 518, 581
BmiI	GGNNCC	3 cut(s)	519, 583, 706
BmrFI	CCNGG	3 cut(s)	44, 715, 870
BmrI	ACTGGG	2 cut(s)	430, 668
BmsI	GCATC	3 cut(s)	276, 427, 613
BmuI	ACTGGG	2 cut(s)	430, 668
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	772
BsaAI	YACGTR	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	3 cut(s)	36, 513, 577
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	3 cut(s)	569, 714, 720
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	4 cut(s)	425, 547, 674, 692
Bse3DI	GCAATG	1 cut(s)	708
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	44, 715, 870
BseDI	CCNNGG	3 cut(s)	36, 513, 577
BseGI	GGATG	2 cut(s)	267, 421
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	3 cut(s)	569, 714, 720
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	4 cut(s)	425, 547, 674, 692
BseRI	GAGGAG	1 cut(s)	936
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	860
BseYI	CCCAGC	1 cut(s)	738
BsgI	GTGCAG	1 cut(s)	698
BshFI	GGCC	1 cut(s)	47
BshTI	ACCGGT	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	2 cut(s)	67, 817
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	3 cut(s)	569, 714, 720
BsmAI	GTCTC	2 cut(s)	607, 830
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	607
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	144, 374
Bsp143I	GATC	3 cut(s)	157, 170, 889
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	519, 583, 706
BspMAI	CTGCAG	2 cut(s)	451, 878
BspPI	GGATC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	4 cut(s)	425, 547, 674, 692
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	36, 513, 577
BssMI	GATC	3 cut(s)	157, 170, 889
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	36, 577
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	3 cut(s)	44, 715, 870
Bst4CI	ACNGT	2 cut(s)	278, 365
Bst6I	CTCTTC	2 cut(s)	19, 50
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	636
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	2 cut(s)	267, 421
BstKTI	GATC	3 cut(s)	160, 173, 892
BstMAI	GTCTC	2 cut(s)	607, 830
BstMBI	GATC	3 cut(s)	157, 170, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 446
BstNI	CCWGG	3 cut(s)	44, 715, 870
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	42, 713, 868
BstSFI	CTRYAG	2 cut(s)	447, 874
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	170
BstXI	CCANNNNNNTGG	2 cut(s)	43, 476
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	267, 421
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	4 cut(s)	119, 283, 370, 681
Cac8I	GCNNGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	3 cut(s)	40, 518, 581
CseI	GACGC	1 cut(s)	404
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	7 cut(s)	125, 272, 701, 720, 750, 801, 807
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	3 cut(s)	159, 172, 891
DpnII	GATC	3 cut(s)	157, 170, 889
DraIII	CACNNNGTG	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	19, 50
EarI	CTCTTC	2 cut(s)	19, 50
Eco130I	CCWWGG	2 cut(s)	36, 577
Eco31I	GGTCTC	1 cut(s)	607
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	3 cut(s)	40, 518, 581
Eco57I	CTGAAG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	584
EcoO109I	RGGNCCY	2 cut(s)	40, 581
EcoRII	CCWGG	3 cut(s)	42, 713, 868
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	2 cut(s)	36, 577
ErhI	CCWWGG	2 cut(s)	36, 577
FaeI	CATG	7 cut(s)	128, 275, 704, 723, 753, 804, 810
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	7 cut(s)	124, 271, 700, 719, 749, 800, 806
Fnu4HI	GCNGC	1 cut(s)	874
FokI	GGATG	2 cut(s)	254, 428
Fsp4HI	GCNGC	1 cut(s)	874
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	1 cut(s)	874
GsaI	CCCAGC	1 cut(s)	742
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	2 cut(s)	67, 817
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	7 cut(s)	128, 275, 704, 723, 753, 804, 810
HindIII	AAGCTT	1 cut(s)	790
HinfI	GANTC	7 cut(s)	5, 287, 332, 343, 587, 640, 785
HpaII	CCGG	2 cut(s)	67, 817
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	4 cut(s)	162, 376, 639, 685
Hpy188III	TCNNGA	5 cut(s)	227, 413, 521, 584, 591
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	1 cut(s)	753
HpyCH4III	ACNGT	2 cut(s)	278, 365
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	449, 679, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 446
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	7 cut(s)	128, 275, 704, 723, 753, 804, 810
Kzo9I	GATC	3 cut(s)	157, 170, 889
LmnI	GCTCC	3 cut(s)	545, 661, 923
Lsp1109I	GCAGC	1 cut(s)	860
LweI	GCATC	3 cut(s)	276, 427, 613
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	588, 833
MalI	GATC	3 cut(s)	159, 172, 891
MboI	GATC	3 cut(s)	157, 170, 889
MboII	GAAGA	4 cut(s)	6, 64, 67, 788
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	144, 374
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	3 cut(s)	77, 252, 259
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	4 cut(s)	296, 596, 649, 779
Mox20I	TGGCCA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	3 cut(s)	348, 534, 915
MslI	CAYNNNNRTG	2 cut(s)	276, 805
Msp20I	TGGCCA	1 cut(s)	47
MspI	CCGG	2 cut(s)	67, 817
MspR9I	CCNGG	3 cut(s)	44, 715, 870
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	3 cut(s)	44, 715, 870
MwoI	GCNNNNNNNGC	2 cut(s)	91, 446
NdeII	GATC	3 cut(s)	157, 170, 889
NlaIII	CATG	7 cut(s)	128, 275, 704, 723, 753, 804, 810
NlaIV	GGNNCC	3 cut(s)	519, 583, 706
NmuCI	GTSAC	2 cut(s)	588, 833
NspI	RCATGY	1 cut(s)	128
PciI	ACATGT	1 cut(s)	124
PctI	GAATGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	5, 332, 343
PflMI	CCANNNNNTGG	1 cut(s)	714
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	875
PleI	GAGTC	4 cut(s)	295, 595, 648, 779
PpsI	GAGTC	4 cut(s)	295, 595, 648, 779
Ppu21I	YACGTR	1 cut(s)	193
PpuMI	RGGWCCY	2 cut(s)	40, 581
PscI	ACATGT	1 cut(s)	124
Psp5II	RGGWCCY	2 cut(s)	40, 581
Psp6I	CCWGG	3 cut(s)	42, 713, 868
PspFI	CCCAGC	1 cut(s)	738
PspGI	CCWGG	3 cut(s)	42, 713, 868
PspN4I	GGNNCC	3 cut(s)	519, 583, 706
PspPI	GGNCC	3 cut(s)	40, 518, 581
PspPPI	RGGWCCY	2 cut(s)	40, 581
PstI	CTGCAG	2 cut(s)	451, 878
PstNI	CAGNNNCTG	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	170
RseI	CAYNNNNRTG	2 cut(s)	276, 805
SaqAI	TTAA	3 cut(s)	348, 534, 915
SatI	GCNGC	1 cut(s)	874
Sau3AI	GATC	3 cut(s)	157, 170, 889
Sau96I	GGNCC	3 cut(s)	40, 518, 581
SchI	GAGTC	4 cut(s)	296, 596, 649, 779
ScrFI	CCNGG	3 cut(s)	44, 715, 870
SduI	GDGCHC	2 cut(s)	144, 374
SfaNI	GCATC	3 cut(s)	276, 427, 613
SfcI	CTRYAG	2 cut(s)	447, 874
SinI	GGWCC	3 cut(s)	40, 518, 581
SmiMI	CAYNNNNRTG	2 cut(s)	276, 805
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	3 cut(s)	77, 252, 259
SspI	AATATT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	3 cut(s)	42, 713, 868
StyI	CCWWGG	2 cut(s)	36, 577
TaaI	ACNGT	2 cut(s)	278, 365
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	96, 325
TasI	AATT	3 cut(s)	77, 252, 259
TfiI	GAWTC	3 cut(s)	5, 332, 343
Tru1I	TTAA	3 cut(s)	348, 534, 915
Tru9I	TTAA	3 cut(s)	348, 534, 915
TscAI	CASTG	4 cut(s)	119, 283, 370, 681
TseFI	GTSAC	2 cut(s)	588, 833
TseI	GCWGC	1 cut(s)	873
Tsp45I	GTSAC	2 cut(s)	588, 833
TspDTI	ATGAA	1 cut(s)	795
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	4 cut(s)	119, 283, 370, 681
Van91I	CCANNNNNTGG	1 cut(s)	714
VpaK11BI	GGWCC	3 cut(s)	40, 518, 581
XceI	RCATGY	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	577
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.