Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016906

Physical Location & Seq

Genomic Coordinates Forward (+)

84107391 .. 84109831

Gene Structure 2441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG616600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATTCTATCTCTTCCTGCTCTCCTGTTATCCCCAAGGACCTGGCCAAGAAGAAGAGGACGAACCGGTTAGCGAAATTGAAGCAGAGCAAGCTCGATGTTCGCCGTGAGCAGTGGCTTTCACATGTCAAAAATAAAGGGCACAAGGTGAATGCTGATCGGAGTGATGGATCTCCTACATCATTTATTCACGTAGATAATGAGCGAAAAATATTATTGGACAATCTGGAAACAAGTTCAACAGGAGGGTCAATTGATAATTCAAGCATCCATGACAGTGATGTGGAGTCTTTGCTGAACAGCCCTTGTGGAAGCAGTTTGGATCGAAGTGATTCAGTAAAGAATCTTAATGAGAGCAGCAACAGTGGGTGCTCGGAAAATGTCAGCAAGGAGGACGCAGACGATGGGTGTCTGGATGACTGGGAGGCTGTTGCAGATGCTTTGACTGCAGATGACAATCAACATAACCATCTGTTTGGTTTTCCTGCCACAACTGAAATGAGGGTTGAACCCACGGGTCCAGAACTCTGTATTAAGAACCCTGGAGCAGAGTTATCAAAACCAGAGAGTGGAAACATAGGTCCCGAGTCACGAGTGAACACGTGTGCTTGGAGACCTGACGATGCTTCCCGTCCTCAGAGTCTGCCAAACTTGTCAAAGGAGCATAGTTTCCCAGTGCAGTCAGACTGGCATTGTGGTCACGGAACCATTGCCTGGACATGGCAAAGCATTGTTCCCCAGCCTTCGTCATGTCCTATATGCTATGAGGATTTAGATATCACAGACTCCAGCTTTCTTCCATGTTCATGTGGCTTCCGGCTATGTCTCTTTTGTCACAAAAGGATTTTAGAGGCAGATGGGAGATGTCCAGGCTGCAGGAAGCAGTATGATCGTGTAAATGAGGTTATGAGCTTTAATGGAGGAGCTACAACTTTTAGAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

315

Amino Acids

34.63

Weight (kDa)

5.39

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	251 - 297	1.4e-18	RING/Ubox like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49800 FvH4_6g49800
malus_domestica	MD09G1041200.v1.1
prunus_persica	Prupe.3G276400_v2.0.a1
pyrus_communis	pycom111g03220
rosa_chinensis	RchiOBHm_Chr2g0169941
rosa_laevigata	RLG00000021912
rosa_roxburghii	Rroxscaffold_2G00081710
rosa_rugosa	Rorug02G0544500
rosa_samantha	Rh2AG616600 Rh2BG628400 Rh2CG597700 Rh2DG639400
rosa_wichuraiana	Rw2G051070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	569, 714
AclWI	GGATC	2 cut(s)	178, 330
AcoI	YGGCCR	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	603
AdeI	CACNNNGTG	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	569, 714, 720
AflIII	ACRYGT	3 cut(s)	124, 600, 602
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	4 cut(s)	82, 240, 264, 509
AjnI	CCWGG	4 cut(s)	42, 541, 713, 868
AluBI	AGCT	5 cut(s)	94, 792, 912, 926, 944
AluI	AGCT	5 cut(s)	94, 792, 912, 926, 944
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	607, 830
AlwI	GGATC	2 cut(s)	178, 330
AlwNI	CAGNNNCTG	1 cut(s)	643
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	357, 873
AsiGI	ACCGGT	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	40, 518, 581
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	3 cut(s)	40, 518, 581
BaeGI	GKGCMC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	47
BauI	CACGAG	1 cut(s)	591
BbrPI	CACGTG	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	369, 860
BccI	CCATC	4 cut(s)	161, 398, 477, 851
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	4 cut(s)	44, 543, 715, 870
BcoDI	GTCTC	2 cut(s)	607, 830
BfmI	CTRYAG	2 cut(s)	447, 874
BisI	GCNGC	2 cut(s)	358, 874
BlsI	GCNGC	2 cut(s)	359, 875
Bme1390I	CCNGG	4 cut(s)	44, 543, 715, 870
Bme18I	GGWCC	3 cut(s)	40, 518, 581
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	3 cut(s)	40, 518, 581
BmiI	GGNNCC	3 cut(s)	519, 583, 706
BmrFI	CCNGG	4 cut(s)	44, 543, 715, 870
BmrI	ACTGGG	2 cut(s)	430, 668
BmsI	GCATC	3 cut(s)	276, 427, 613
BmuI	ACTGGG	2 cut(s)	430, 668
BpmI	CTGGAG	2 cut(s)	564, 772
BsaAI	YACGTR	2 cut(s)	193, 603
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	3 cut(s)	36, 513, 541
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	3 cut(s)	569, 714, 720
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	3 cut(s)	425, 674, 692
Bse3DI	GCAATG	1 cut(s)	708
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	4 cut(s)	44, 543, 715, 870
BseDI	CCNNGG	3 cut(s)	36, 513, 541
BseGI	GGATG	2 cut(s)	267, 421
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	3 cut(s)	569, 714, 720
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	3 cut(s)	425, 674, 692
BseRI	GAGGAG	1 cut(s)	936
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	369, 860
BseYI	CCCAGC	1 cut(s)	738
BsgI	GTGCAG	1 cut(s)	698
BshFI	GGCC	1 cut(s)	47
BshTI	ACCGGT	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	2 cut(s)	67, 817
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	3 cut(s)	569, 714, 720
BsmAI	GTCTC	2 cut(s)	607, 830
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	607
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	144, 374
Bsp143I	GATC	4 cut(s)	157, 170, 322, 889
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	519, 583, 706
BspMAI	CTGCAG	2 cut(s)	451, 878
BspPI	GGATC	2 cut(s)	178, 330
BspTNI	GGTCTC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	425, 674, 692
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	36, 513, 541
BssMI	GATC	4 cut(s)	157, 170, 322, 889
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	4 cut(s)	44, 543, 715, 870
Bst4CI	ACNGT	2 cut(s)	278, 365
Bst6I	CTCTTC	2 cut(s)	19, 50
BstBAI	YACGTR	2 cut(s)	193, 603
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	636
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	2 cut(s)	267, 421
BstKTI	GATC	4 cut(s)	160, 173, 325, 892
BstMAI	GTCTC	2 cut(s)	607, 830
BstMBI	GATC	4 cut(s)	157, 170, 322, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 446
BstNI	CCWGG	4 cut(s)	44, 543, 715, 870
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	4 cut(s)	42, 541, 713, 868
BstSFI	CTRYAG	2 cut(s)	447, 874
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	369, 860
BstX2I	RGATCY	1 cut(s)	170
BstXI	CCANNNNNNTGG	2 cut(s)	43, 476
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	267, 421
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	4 cut(s)	119, 283, 370, 681
Cac8I	GCNNGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	3 cut(s)	40, 518, 581
CseI	GACGC	1 cut(s)	404
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	6 cut(s)	125, 272, 720, 750, 801, 807
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	4 cut(s)	159, 172, 324, 891
DpnII	GATC	4 cut(s)	157, 170, 322, 889
DraIII	CACNNNGTG	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	19, 50
EarI	CTCTTC	2 cut(s)	19, 50
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	607
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	3 cut(s)	40, 518, 581
Eco72I	CACGTG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	584
EcoO109I	RGGNCCY	2 cut(s)	40, 581
EcoRII	CCWGG	4 cut(s)	42, 541, 713, 868
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	6 cut(s)	128, 275, 723, 753, 804, 810
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	6 cut(s)	124, 271, 719, 749, 800, 806
Fnu4HI	GCNGC	2 cut(s)	358, 874
FokI	GGATG	2 cut(s)	254, 428
Fsp4HI	GCNGC	2 cut(s)	358, 874
GluI	GCNGC	2 cut(s)	358, 874
GsaI	CCCAGC	1 cut(s)	742
GsuI	CTGGAG	2 cut(s)	564, 772
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	2 cut(s)	67, 817
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	6 cut(s)	128, 275, 723, 753, 804, 810
HinfI	GANTC	7 cut(s)	5, 287, 332, 343, 587, 640, 785
HpaII	CCGG	2 cut(s)	67, 817
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	4 cut(s)	162, 376, 639, 685
Hpy188III	TCNNGA	5 cut(s)	227, 413, 521, 584, 591
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	1 cut(s)	753
HpyCH4III	ACNGT	2 cut(s)	278, 365
HpyCH4IV	ACGT	2 cut(s)	192, 602
HpyCH4V	TGCA	4 cut(s)	434, 449, 679, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 446
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	2 cut(s)	192, 602
Hsp92II	CATG	6 cut(s)	128, 275, 723, 753, 804, 810
Kzo9I	GATC	4 cut(s)	157, 170, 322, 889
LmnI	GCTCC	3 cut(s)	545, 661, 923
Lsp1109I	GCAGC	2 cut(s)	369, 860
LweI	GCATC	3 cut(s)	276, 427, 613
MaeII	ACGT	2 cut(s)	192, 602
MaeIII	GTNAC	3 cut(s)	588, 698, 833
MalI	GATC	4 cut(s)	159, 172, 324, 891
MboI	GATC	4 cut(s)	157, 170, 322, 889
MboII	GAAGA	4 cut(s)	6, 64, 67, 788
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	144, 374
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	3 cut(s)	77, 252, 259
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	4 cut(s)	296, 596, 649, 779
Mox20I	TGGCCA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	3 cut(s)	348, 534, 915
MslI	CAYNNNNRTG	2 cut(s)	276, 805
Msp20I	TGGCCA	1 cut(s)	47
MspI	CCGG	2 cut(s)	67, 817
MspR9I	CCNGG	4 cut(s)	44, 543, 715, 870
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	4 cut(s)	44, 543, 715, 870
MwoI	GCNNNNNNNGC	2 cut(s)	91, 446
NdeII	GATC	4 cut(s)	157, 170, 322, 889
NlaIII	CATG	6 cut(s)	128, 275, 723, 753, 804, 810
NlaIV	GGNNCC	3 cut(s)	519, 583, 706
NmuCI	GTSAC	3 cut(s)	588, 698, 833
NspI	RCATGY	1 cut(s)	128
PciI	ACATGT	1 cut(s)	124
PctI	GAATGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	5, 332, 343
PflMI	CCANNNNNTGG	2 cut(s)	569, 714
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	359, 875
PleI	GAGTC	4 cut(s)	295, 595, 648, 779
PmaCI	CACGTG	1 cut(s)	603
PmlI	CACGTG	1 cut(s)	603
PpsI	GAGTC	4 cut(s)	295, 595, 648, 779
Ppu21I	YACGTR	2 cut(s)	193, 603
PpuMI	RGGWCCY	2 cut(s)	40, 581
PscI	ACATGT	1 cut(s)	124
Psp5II	RGGWCCY	2 cut(s)	40, 581
Psp6I	CCWGG	4 cut(s)	42, 541, 713, 868
PspCI	CACGTG	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	738
PspGI	CCWGG	4 cut(s)	42, 541, 713, 868
PspN4I	GGNNCC	3 cut(s)	519, 583, 706
PspPI	GGNCC	3 cut(s)	40, 518, 581
PspPPI	RGGWCCY	2 cut(s)	40, 581
PstI	CTGCAG	2 cut(s)	451, 878
PstNI	CAGNNNCTG	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	170
RseI	CAYNNNNRTG	2 cut(s)	276, 805
SaqAI	TTAA	3 cut(s)	348, 534, 915
SatI	GCNGC	2 cut(s)	358, 874
Sau3AI	GATC	4 cut(s)	157, 170, 322, 889
Sau96I	GGNCC	3 cut(s)	40, 518, 581
SchI	GAGTC	4 cut(s)	296, 596, 649, 779
ScrFI	CCNGG	4 cut(s)	44, 543, 715, 870
SduI	GDGCHC	2 cut(s)	144, 374
SfaNI	GCATC	3 cut(s)	276, 427, 613
SfcI	CTRYAG	2 cut(s)	447, 874
SinI	GGWCC	3 cut(s)	40, 518, 581
SmiMI	CAYNNNNRTG	2 cut(s)	276, 805
Sse9I	AATT	3 cut(s)	77, 252, 259
SspI	AATATT	1 cut(s)	213
StyD4I	CCNGG	4 cut(s)	42, 541, 713, 868
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	278, 365
TaiI	ACGT	2 cut(s)	195, 605
TaqI	TCGA	2 cut(s)	96, 325
TasI	AATT	3 cut(s)	77, 252, 259
TfiI	GAWTC	3 cut(s)	5, 332, 343
Tru1I	TTAA	3 cut(s)	348, 534, 915
Tru9I	TTAA	3 cut(s)	348, 534, 915
TscAI	CASTG	4 cut(s)	119, 283, 370, 681
TseFI	GTSAC	3 cut(s)	588, 698, 833
TseI	GCWGC	2 cut(s)	357, 873
Tsp45I	GTSAC	3 cut(s)	588, 698, 833
TspDTI	ATGAA	1 cut(s)	795
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	4 cut(s)	119, 283, 370, 681
Van91I	CCANNNNNTGG	2 cut(s)	569, 714
VpaK11BI	GGWCC	3 cut(s)	40, 518, 581
XceI	RCATGY	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.