RING/Ubox like zinc-binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g49800 FvH4_6g49800 |
| malus_domestica | MD09G1041200.v1.1 |
| prunus_persica | Prupe.3G276400_v2.0.a1 |
| pyrus_communis | pycom111g03220 |
| rosa_chinensis | RchiOBHm_Chr2g0169941 |
| rosa_laevigata | RLG00000021912 |
| rosa_roxburghii | Rroxscaffold_2G00081710 |
| rosa_rugosa | Rorug02G0544500 |
| rosa_samantha | Rh2AG616600 Rh2BG628400 Rh2CG597700 Rh2DG639400 |
| rosa_wichuraiana | Rw2G051070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 717 |
| AciI | CCGC | 1 cut(s) | 699 |
| AclWI | GGATC | 1 cut(s) | 223 |
| AcoI | YGGCCR | 3 cut(s) | 48, 75, 700 |
| AfaI | GTAC | 1 cut(s) | 598 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 717 |
| AflIII | ACRYGT | 1 cut(s) | 127 |
| AgeI | ACCGGT | 1 cut(s) | 69 |
| AgsI | TTSAA | 4 cut(s) | 85, 243, 339, 512 |
| AjnI | CCWGG | 4 cut(s) | 544, 586, 675, 871 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 140, 172 |
| AluBI | AGCT | 7 cut(s) | 97, 360, 497, 645, 795, 929, 947 |
| AluI | AGCT | 7 cut(s) | 97, 360, 497, 645, 795, 929, 947 |
| Alw26I | GTCTC | 3 cut(s) | 22, 297, 610 |
| AlwI | GGATC | 1 cut(s) | 223 |
| Ama87I | CYCGRG | 1 cut(s) | 790 |
| AoxI | GGCC | 3 cut(s) | 48, 75, 700 |
| ApeKI | GCWGC | 3 cut(s) | 360, 363, 664 |
| AsiGI | ACCGGT | 1 cut(s) | 69 |
| AsuHPI | GGTGA | 2 cut(s) | 163, 168 |
| AvaI | CYCGRG | 1 cut(s) | 790 |
| BaeGI | GKGCMC | 1 cut(s) | 741 |
| BalI | TGGCCA | 2 cut(s) | 50, 77 |
| BbvI | GCAGC | 3 cut(s) | 347, 375, 676 |
| BccI | CCATC | 3 cut(s) | 155, 401, 854 |
| BceAI | ACGGC | 1 cut(s) | 93 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 875, 909 |
| BciT130I | CCWGG | 4 cut(s) | 546, 588, 677, 873 |
| BcoDI | GTCTC | 3 cut(s) | 22, 297, 610 |
| BfaI | CTAG | 4 cut(s) | 189, 416, 534, 851 |
| BfmI | CTRYAG | 1 cut(s) | 361 |
| BisI | GCNGC | 4 cut(s) | 361, 364, 665, 700 |
| BlsI | GCNGC | 4 cut(s) | 362, 365, 666, 701 |
| Bme1390I | CCNGG | 4 cut(s) | 546, 588, 677, 873 |
| BmeT110I | CYCGRG | 1 cut(s) | 790 |
| BmiI | GGNNCC | 3 cut(s) | 13, 585, 709 |
| BmrFI | CCNGG | 4 cut(s) | 546, 588, 677, 873 |
| BmrI | ACTGGG | 1 cut(s) | 433 |
| BmsI | GCATC | 5 cut(s) | 279, 388, 430, 616, 866 |
| BmuI | ACTGGG | 1 cut(s) | 433 |
| BpmI | CTGGAG | 1 cut(s) | 567 |
| BsaAI | YACGTR | 1 cut(s) | 596 |
| BsaI | GGTCTC | 1 cut(s) | 610 |
| BsaJI | CCNNGG | 2 cut(s) | 587, 703 |
| BsaWI | WCCGGW | 1 cut(s) | 69 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 717 |
| Bse118I | RCCGGY | 1 cut(s) | 69 |
| Bse1I | ACTGG | 2 cut(s) | 428, 695 |
| Bse3DI | GCAATG | 2 cut(s) | 694, 711 |
| BseBI | CCWGG | 4 cut(s) | 546, 588, 677, 873 |
| BseDI | CCNNGG | 2 cut(s) | 587, 703 |
| BseGI | GGATG | 4 cut(s) | 166, 270, 403, 881 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 717 |
| BseMI | GCAATG | 2 cut(s) | 694, 711 |
| BseMII | CTCAG | 2 cut(s) | 299, 653 |
| BseNI | ACTGG | 2 cut(s) | 428, 695 |
| BseRI | GAGGAG | 2 cut(s) | 264, 939 |
| BseSI | GKGCMC | 1 cut(s) | 741 |
| BseXI | GCAGC | 3 cut(s) | 347, 375, 676 |
| BseYI | CCCAGC | 1 cut(s) | 741 |
| BshFI | GGCC | 3 cut(s) | 50, 77, 702 |
| BshTI | ACCGGT | 1 cut(s) | 69 |
| BsiHKCI | CYCGRG | 1 cut(s) | 790 |
| BsiSI | CCGG | 2 cut(s) | 9, 70 |
| BsiWI | CGTACG | 1 cut(s) | 596 |
| BslFI | GGGAC | 2 cut(s) | 507, 741 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 717 |
| BsmAI | GTCTC | 3 cut(s) | 22, 297, 610 |
| BsmBI | CGTCTC | 1 cut(s) | 22 |
| BsmFI | GGGAC | 2 cut(s) | 507, 741 |
| BsnI | GGCC | 3 cut(s) | 50, 77, 702 |
| Bso31I | GGTCTC | 1 cut(s) | 610 |
| BsoBI | CYCGRG | 1 cut(s) | 790 |
| Bsp1286I | GDGCHC | 1 cut(s) | 741 |
| Bsp143I | GATC | 2 cut(s) | 215, 892 |
| Bsp19I | CCATGG | 1 cut(s) | 703 |
| BspACI | CCGC | 1 cut(s) | 699 |
| BspANI | GGCC | 3 cut(s) | 50, 77, 702 |
| BspCNI | CTCAG | 2 cut(s) | 300, 652 |
| BspLI | GGNNCC | 3 cut(s) | 13, 585, 709 |
| BspMAI | CTGCAG | 1 cut(s) | 365 |
| BspPI | GGATC | 1 cut(s) | 223 |
| BspTNI | GGTCTC | 1 cut(s) | 610 |
| BsrDI | GCAATG | 2 cut(s) | 694, 711 |
| BsrFI | RCCGGY | 1 cut(s) | 69 |
| BsrI | ACTGG | 2 cut(s) | 428, 695 |
| BssAI | RCCGGY | 1 cut(s) | 69 |
| BssECI | CCNNGG | 2 cut(s) | 587, 703 |
| BssMI | GATC | 2 cut(s) | 215, 892 |
| BssT1I | CCWWGG | 1 cut(s) | 703 |
| Bst2UI | CCWGG | 4 cut(s) | 546, 588, 677, 873 |
| Bst6I | CTCTTC | 1 cut(s) | 53 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 372 |
| BstBAI | YACGTR | 1 cut(s) | 596 |
| BstC8I | GCNNGC | 1 cut(s) | 647 |
| BstDEI | CTNAG | 2 cut(s) | 308, 639 |
| BstDSI | CCRYGG | 1 cut(s) | 703 |
| BstEII | GGTNACC | 1 cut(s) | 174 |
| BstF5I | GGATG | 4 cut(s) | 166, 270, 403, 881 |
| BstKTI | GATC | 2 cut(s) | 218, 895 |
| BstMAI | GTCTC | 3 cut(s) | 22, 297, 610 |
| BstMBI | GATC | 2 cut(s) | 215, 892 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 94, 372, 449, 655, 664, 834 |
| BstNI | CCWGG | 4 cut(s) | 546, 588, 677, 873 |
| BstNSI | RCATGY | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 174 |
| BstSCI | CCNGG | 4 cut(s) | 544, 586, 675, 871 |
| BstSFI | CTRYAG | 1 cut(s) | 361 |
| BstSLI | GKGCMC | 1 cut(s) | 741 |
| BstV1I | GCAGC | 3 cut(s) | 347, 375, 676 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 46 |
| BsuRI | GGCC | 3 cut(s) | 50, 77, 702 |
| BtgI | CCRYGG | 1 cut(s) | 703 |
| BtgZI | GCGATG | 1 cut(s) | 880 |
| BtsCI | GGATG | 4 cut(s) | 166, 270, 403, 881 |
| BtsI | GCAGTG | 1 cut(s) | 373 |
| BtsIMutI | CAGTG | 1 cut(s) | 373 |
| Cac8I | GCNNGC | 1 cut(s) | 647 |
| Cfr10I | RCCGGY | 1 cut(s) | 69 |
| Csp6I | GTAC | 1 cut(s) | 597 |
| CspAI | ACCGGT | 1 cut(s) | 69 |
| CviAII | CATG | 7 cut(s) | 128, 275, 580, 704, 717, 723, 810 |
| CviQI | GTAC | 1 cut(s) | 597 |
| DdeI | CTNAG | 2 cut(s) | 308, 639 |
| DpnI | GATC | 2 cut(s) | 217, 894 |
| DpnII | GATC | 2 cut(s) | 215, 892 |
| DraI | TTTAAA | 1 cut(s) | 447 |
| EaeI | YGGCCR | 3 cut(s) | 48, 75, 700 |
| Eam1104I | CTCTTC | 1 cut(s) | 53 |
| EarI | CTCTTC | 1 cut(s) | 53 |
| Eco130I | CCWWGG | 1 cut(s) | 703 |
| Eco31I | GGTCTC | 1 cut(s) | 610 |
| Eco88I | CYCGRG | 1 cut(s) | 790 |
| Eco91I | GGTNACC | 1 cut(s) | 174 |
| EcoO65I | GGTNACC | 1 cut(s) | 174 |
| EcoRII | CCWGG | 4 cut(s) | 544, 586, 675, 871 |
| EcoT14I | CCWWGG | 1 cut(s) | 703 |
| ErhI | CCWWGG | 1 cut(s) | 703 |
| Esp3I | CGTCTC | 1 cut(s) | 22 |
| FaeI | CATG | 7 cut(s) | 131, 278, 583, 707, 720, 726, 813 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 140, 172 |
| FaqI | GGGAC | 2 cut(s) | 507, 741 |
| FatI | CATG | 7 cut(s) | 127, 274, 579, 703, 716, 722, 809 |
| FauNDI | CATATG | 1 cut(s) | 761 |
| Fnu4HI | GCNGC | 4 cut(s) | 361, 364, 665, 700 |
| FokI | GGATG | 4 cut(s) | 173, 257, 410, 888 |
| Fsp4HI | GCNGC | 4 cut(s) | 361, 364, 665, 700 |
| FspBI | CTAG | 4 cut(s) | 189, 416, 534, 851 |
| GluI | GCNGC | 4 cut(s) | 361, 364, 665, 700 |
| GsaI | CCCAGC | 1 cut(s) | 745 |
| GsuI | CTGGAG | 1 cut(s) | 567 |
| HaeIII | GGCC | 3 cut(s) | 50, 77, 702 |
| HapII | CCGG | 2 cut(s) | 9, 70 |
| Hin1II | CATG | 7 cut(s) | 131, 278, 583, 707, 720, 726, 813 |
| HinfI | GANTC | 7 cut(s) | 290, 335, 346, 541, 554, 788, 847 |
| HpaII | CCGG | 2 cut(s) | 9, 70 |
| HphI | GGTGA | 2 cut(s) | 163, 168 |
| Hpy166II | GTNNAC | 2 cut(s) | 113, 154 |
| Hpy188I | TCNGA | 4 cut(s) | 297, 506, 642, 688 |
| Hpy188III | TCNNGA | 5 cut(s) | 133, 378, 416, 524, 851 |
| Hpy8I | GTNNAC | 2 cut(s) | 113, 154 |
| HpyAV | CCTTC | 3 cut(s) | 142, 159, 756 |
| HpyCH4IV | ACGT | 1 cut(s) | 595 |
| HpyCH4V | TGCA | 6 cut(s) | 208, 363, 452, 682, 716, 879 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 94, 372, 449, 655, 664, 834 |
| HpyF3I | CTNAG | 2 cut(s) | 308, 639 |
| HpySE526I | ACGT | 1 cut(s) | 595 |
| Hsp92II | CATG | 7 cut(s) | 131, 278, 583, 707, 720, 726, 813 |
| Kzo9I | GATC | 2 cut(s) | 215, 892 |
| LmnI | GCTCC | 3 cut(s) | 17, 707, 926 |
| Lsp1109I | GCAGC | 3 cut(s) | 347, 375, 676 |
| LweI | GCATC | 5 cut(s) | 279, 388, 430, 616, 866 |
| MaeI | CTAG | 4 cut(s) | 189, 416, 534, 851 |
| MaeII | ACGT | 1 cut(s) | 595 |
| MaeIII | GTNAC | 3 cut(s) | 174, 591, 781 |
| MalI | GATC | 2 cut(s) | 217, 894 |
| MboI | GATC | 2 cut(s) | 215, 892 |
| MboII | GAAGA | 5 cut(s) | 67, 70, 355, 741, 791 |
| MhlI | GDGCHC | 1 cut(s) | 741 |
| MlsI | TGGCCA | 2 cut(s) | 50, 77 |
| MluCI | AATT | 2 cut(s) | 80, 226 |
| MluNI | TGGCCA | 2 cut(s) | 50, 77 |
| MlyI | GAGTC | 2 cut(s) | 299, 782 |
| Mox20I | TGGCCA | 2 cut(s) | 50, 77 |
| MscI | TGGCCA | 2 cut(s) | 50, 77 |
| MseI | TTAA | 3 cut(s) | 351, 446, 918 |
| MslI | CAYNNNNRTG | 1 cut(s) | 721 |
| Msp20I | TGGCCA | 2 cut(s) | 50, 77 |
| MspI | CCGG | 2 cut(s) | 9, 70 |
| MspR9I | CCNGG | 4 cut(s) | 546, 588, 677, 873 |
| MvaI | CCWGG | 4 cut(s) | 546, 588, 677, 873 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 94, 372, 449, 655, 664, 834 |
| NcoI | CCATGG | 1 cut(s) | 703 |
| NdeI | CATATG | 1 cut(s) | 761 |
| NdeII | GATC | 2 cut(s) | 215, 892 |
| NlaIII | CATG | 7 cut(s) | 131, 278, 583, 707, 720, 726, 813 |
| NlaIV | GGNNCC | 3 cut(s) | 13, 585, 709 |
| NmuCI | GTSAC | 3 cut(s) | 174, 591, 781 |
| NspI | RCATGY | 1 cut(s) | 131 |
| PaeR7I | CTCGAG | 1 cut(s) | 790 |
| PciI | ACATGT | 1 cut(s) | 127 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 601 |
| PfeI | GAWTC | 5 cut(s) | 335, 346, 541, 554, 847 |
| Pfl23II | CGTACG | 1 cut(s) | 596 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 717 |
| PfoI | TCCNGGA | 2 cut(s) | 544, 871 |
| PinAI | ACCGGT | 1 cut(s) | 69 |
| PkrI | GCNGC | 4 cut(s) | 362, 365, 666, 701 |
| PleI | GAGTC | 2 cut(s) | 298, 782 |
| PpsI | GAGTC | 2 cut(s) | 298, 782 |
| Ppu21I | YACGTR | 1 cut(s) | 596 |
| PscI | ACATGT | 1 cut(s) | 127 |
| Psp6I | CCWGG | 4 cut(s) | 544, 586, 675, 871 |
| PspEI | GGTNACC | 1 cut(s) | 174 |
| PspFI | CCCAGC | 1 cut(s) | 741 |
| PspGI | CCWGG | 4 cut(s) | 544, 586, 675, 871 |
| PspLI | CGTACG | 1 cut(s) | 596 |
| PspN4I | GGNNCC | 3 cut(s) | 13, 585, 709 |
| PspXI | VCTCGAGB | 1 cut(s) | 790 |
| PstI | CTGCAG | 1 cut(s) | 365 |
| RsaI | GTAC | 1 cut(s) | 598 |
| RsaNI | GTAC | 1 cut(s) | 597 |
| RseI | CAYNNNNRTG | 1 cut(s) | 721 |
| SaqAI | TTAA | 3 cut(s) | 351, 446, 918 |
| SatI | GCNGC | 4 cut(s) | 361, 364, 665, 700 |
| Sau3AI | GATC | 2 cut(s) | 215, 892 |
| SchI | GAGTC | 2 cut(s) | 299, 782 |
| ScrFI | CCNGG | 4 cut(s) | 546, 588, 677, 873 |
| SduI | GDGCHC | 1 cut(s) | 741 |
| SfaNI | GCATC | 5 cut(s) | 279, 388, 430, 616, 866 |
| SfcI | CTRYAG | 1 cut(s) | 361 |
| Sfr274I | CTCGAG | 1 cut(s) | 790 |
| SlaI | CTCGAG | 1 cut(s) | 790 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 721 |
| SmlI | CTYRAG | 1 cut(s) | 790 |
| SmoI | CTYRAG | 1 cut(s) | 790 |
| Sse9I | AATT | 2 cut(s) | 80, 226 |
| SsiI | CCGC | 1 cut(s) | 699 |
| SspMI | CTAG | 4 cut(s) | 189, 416, 534, 851 |
| StyD4I | CCNGG | 4 cut(s) | 544, 586, 675, 871 |
| StyI | CCWWGG | 1 cut(s) | 703 |
| TaiI | ACGT | 1 cut(s) | 598 |
| TaqI | TCGA | 2 cut(s) | 99, 791 |
| TasI | AATT | 2 cut(s) | 80, 226 |
| TauI | GCSGC | 1 cut(s) | 702 |
| TfiI | GAWTC | 5 cut(s) | 335, 346, 541, 554, 847 |
| Tru1I | TTAA | 3 cut(s) | 351, 446, 918 |
| Tru9I | TTAA | 3 cut(s) | 351, 446, 918 |
| TscAI | CASTG | 1 cut(s) | 373 |
| TseFI | GTSAC | 3 cut(s) | 174, 591, 781 |
| TseI | GCWGC | 3 cut(s) | 360, 363, 664 |
| Tsp45I | GTSAC | 3 cut(s) | 174, 591, 781 |
| TspDTI | ATGAA | 4 cut(s) | 314, 356, 567, 798 |
| TspGWI | ACGGA | 2 cut(s) | 4, 792 |
| TspRI | CASTG | 1 cut(s) | 373 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 717 |
| XbaI | TCTAGA | 2 cut(s) | 415, 850 |
| XceI | RCATGY | 1 cut(s) | 131 |
| XhoI | CTCGAG | 1 cut(s) | 790 |
| XspI | CTAG | 4 cut(s) | 189, 416, 534, 851 |