Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016906

Physical Location & Seq

Genomic Coordinates Reverse (-)

67379926 .. 67380444

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0544500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGGTCCATCCAATCCCCAAGAGGCGCAACATCTCCATCCAGTACCATTCAATAAGCCCACTCTCTGAAGCCCAGGCCCTCCTCGGTCTCACCCACAAGAAGCTCCACCGCCTCCCCCATGTCTTCAGCCGCGTCCTCGAGCTCCCTTTCCGCTCCGACGCCGACGTCCTCATCGAGGAGAACCCCGACTGCTTCCACTTCGTCGTCGAAACCGAGAGCTTCGGCCACGACGTCAGGACCCACACCGTCAAAATCCACCCCGGGGTGACCAAGATTGTCGTCAGGGAAAGAGGGTCCGCGGCGGAGCTGACGTTGGACGAGCTGGAGCTGGACATGTGGAGGTTCCTCCTGCCAGAGTCGACCCGGACGGAGCTGGCCAGGGCGGTTTTTGTCGACGGGGAGCTCATTGTGACGGTGCAGAAGATGGAGGGGATGGAGAATTTGGAGGGCGGAGATGGTGGGGAGGTTTGGGGCGGTGGTGGTGGGAATGGGAATGGGGGTTCAGAGGAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

172

Amino Acids

19.1

Weight (kDa)

5.45

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49800 FvH4_6g49800
malus_domestica	MD09G1041200.v1.1
prunus_persica	Prupe.3G276400_v2.0.a1
pyrus_communis	pycom111g03220
rosa_chinensis	RchiOBHm_Chr2g0169941
rosa_laevigata	RLG00000021912
rosa_roxburghii	Rroxscaffold_2G00081710
rosa_rugosa	Rorug02G0544500
rosa_samantha	Rh2AG616600 Rh2BG628400 Rh2CG597700 Rh2DG639400
rosa_wichuraiana	Rw2G051070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	2 cut(s)	171, 237
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	2 cut(s)	362, 396
AccII	CGCG	2 cut(s)	135, 302
AciI	CCGC	9 cut(s)	112, 133, 154, 300, 302, 305, 386, 453, 477
AcoI	YGGCCR	2 cut(s)	226, 378
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	2 cut(s)	90, 112
AcyI	GRCGYC	3 cut(s)	162, 168, 234
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	178, 265
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	54
AjnI	CCWGG	2 cut(s)	75, 380
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	8 cut(s)	106, 145, 222, 310, 325, 331, 376, 406
AluI	AGCT	8 cut(s)	106, 145, 222, 310, 325, 331, 376, 406
Alw21I	GWGCWC	2 cut(s)	147, 408
Alw26I	GTCTC	1 cut(s)	95
Ama87I	CYCGRG	2 cut(s)	140, 263
AoxI	GGCC	3 cut(s)	78, 226, 378
ApoI	RAATTY	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	4 cut(s)	7, 79, 240, 297
AsuC2I	CCSGG	3 cut(s)	264, 265, 367
AsuHPI	GGTGA	2 cut(s)	85, 280
AvaI	CYCGRG	2 cut(s)	140, 263
AvaII	GGWCC	3 cut(s)	7, 240, 297
BalI	TGGCCA	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	147, 408
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	147, 408
BccI	CCATC	5 cut(s)	18, 47, 421, 430, 452
BciT130I	CCWGG	2 cut(s)	77, 382
BcnI	CCSGG	3 cut(s)	264, 265, 367
BcoDI	GTCTC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	133, 303
BlsI	GCNGC	2 cut(s)	134, 304
Bme1390I	CCNGG	5 cut(s)	77, 264, 265, 367, 382
Bme18I	GGWCC	3 cut(s)	7, 240, 297
BmeT110I	CYCGRG	2 cut(s)	140, 263
BmgT120I	GGNCC	4 cut(s)	7, 79, 240, 297
BmiI	GGNNCC	3 cut(s)	242, 298, 347
BmrFI	CCNGG	5 cut(s)	77, 264, 265, 367, 382
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	347
BpuMI	CCSGG	3 cut(s)	264, 265, 367
BsaHI	GRCGYC	3 cut(s)	162, 168, 234
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	7 cut(s)	75, 85, 262, 263, 264, 300, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 265
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	77, 382
BseDI	CCNNGG	7 cut(s)	75, 85, 262, 263, 264, 300, 381
BseGI	GGATG	3 cut(s)	10, 39, 441
BseLI	CCNNNNNNNGG	2 cut(s)	178, 265
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	2 cut(s)	74, 194
BsgI	GTGCAG	1 cut(s)	440
Bsh1236I	CGCG	2 cut(s)	135, 302
BshFI	GGCC	3 cut(s)	80, 228, 380
BsiHKAI	GWGCWC	2 cut(s)	147, 408
BsiHKCI	CYCGRG	2 cut(s)	140, 263
BsiSI	CCGG	2 cut(s)	264, 367
BslI	CCNNNNNNNGG	2 cut(s)	178, 265
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	80, 228, 380
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	2 cut(s)	140, 263
Bsp1286I	GDGCHC	2 cut(s)	147, 408
BspACI	CCGC	9 cut(s)	112, 133, 154, 300, 302, 305, 386, 453, 477
BspANI	GGCC	3 cut(s)	80, 228, 380
BspFNI	CGCG	2 cut(s)	135, 302
BspLI	GGNNCC	3 cut(s)	242, 298, 347
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	7 cut(s)	75, 85, 262, 263, 264, 300, 381
BssNI	GRCGYC	3 cut(s)	162, 168, 234
Bst2UI	CCWGG	2 cut(s)	77, 382
Bst4CI	ACNGT	2 cut(s)	250, 418
BstACI	GRCGYC	3 cut(s)	162, 168, 234
BstC8I	GCNNGC	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	300
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	10, 39, 441
BstFNI	CGCG	2 cut(s)	135, 302
BstHHI	GCGC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	95
BstNI	CCWGG	2 cut(s)	77, 382
BstNSI	RCATGY	1 cut(s)	340
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	5 cut(s)	75, 262, 263, 365, 380
BstUI	CGCG	2 cut(s)	135, 302
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	80, 228, 380
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	10, 39, 441
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	4 cut(s)	7, 79, 240, 297
Cfr42I	CCGCGG	1 cut(s)	303
Cfr9I	CCCGGG	1 cut(s)	263
CseI	GACGC	2 cut(s)	124, 170
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	122, 337
CviQI	GTAC	1 cut(s)	46
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	2 cut(s)	226, 378
EciI	GGCGGA	2 cut(s)	320, 468
Ecl136II	GAGCTC	2 cut(s)	145, 406
Eco24I	GRGCYC	2 cut(s)	147, 408
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	3 cut(s)	7, 240, 297
Eco53kI	GAGCTC	2 cut(s)	145, 406
Eco57I	CTGAAG	2 cut(s)	90, 112
Eco88I	CYCGRG	2 cut(s)	140, 263
Eco91I	GGTNACC	1 cut(s)	268
EcoICRI	GAGCTC	2 cut(s)	145, 406
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	79, 240
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	75, 380
EcoT38I	GRGCYC	2 cut(s)	147, 408
FaeI	CATG	2 cut(s)	125, 340
FaiI	YATR	3 cut(s)	123, 338, 517
FatI	CATG	2 cut(s)	121, 336
FblI	GTMKAC	2 cut(s)	362, 396
Fnu4HI	GCNGC	2 cut(s)	133, 303
FokI	GGATG	2 cut(s)	26, 448
FriOI	GRGCYC	2 cut(s)	147, 408
Fsp4HI	GCNGC	2 cut(s)	133, 303
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	133, 303
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	80, 228, 380
HapII	CCGG	2 cut(s)	264, 367
HgaI	GACGC	2 cut(s)	124, 170
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	3 cut(s)	162, 168, 234
Hin1II	CATG	2 cut(s)	125, 340
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	2 cut(s)	363, 397
HindII	GTYRAC	2 cut(s)	363, 397
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	2 cut(s)	264, 367
HphI	GGTGA	2 cut(s)	85, 280
Hpy166II	GTNNAC	2 cut(s)	363, 397
Hpy188I	TCNGA	3 cut(s)	70, 160, 508
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	2 cut(s)	363, 397
Hpy99I	CGWCG	6 cut(s)	164, 170, 209, 212, 236, 401
HpyCH4III	ACNGT	2 cut(s)	250, 418
HpyCH4IV	ACGT	3 cut(s)	168, 234, 314
HpyCH4V	TGCA	1 cut(s)	421
HpySE526I	ACGT	3 cut(s)	168, 234, 314
Hsp92I	GRCGYC	3 cut(s)	162, 168, 234
Hsp92II	CATG	2 cut(s)	125, 340
HspAI	GCGC	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	303
LmnI	GCTCC	7 cut(s)	111, 150, 161, 307, 328, 373, 403
MaeII	ACGT	3 cut(s)	168, 234, 314
MaeIII	GTNAC	2 cut(s)	268, 412
MbiI	CCGCTC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	118, 436
MhlI	GDGCHC	2 cut(s)	147, 408
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	1 cut(s)	442
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	183, 297
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	2 cut(s)	264, 367
MspR9I	CCNGG	5 cut(s)	77, 264, 265, 367, 382
MvaI	CCWGG	2 cut(s)	77, 382
MvnI	CGCG	2 cut(s)	135, 302
NciI	CCSGG	3 cut(s)	264, 265, 367
NlaIII	CATG	2 cut(s)	125, 340
NlaIV	GGNNCC	3 cut(s)	242, 298, 347
NmuCI	GTSAC	2 cut(s)	268, 412
NspI	RCATGY	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	140
PciI	ACATGT	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 213, 231
PkrI	GCNGC	2 cut(s)	134, 304
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	240
PscI	ACATGT	1 cut(s)	336
Psp124BI	GAGCTC	2 cut(s)	147, 408
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	75, 380
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	75, 380
PspN4I	GGNNCC	3 cut(s)	242, 298, 347
PspPI	GGNCC	4 cut(s)	7, 79, 240, 297
PspPPI	RGGWCCY	1 cut(s)	240
PspXI	VCTCGAGB	1 cut(s)	140
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	2 cut(s)	147, 408
SacII	CCGCGG	1 cut(s)	303
SalI	GTCGAC	2 cut(s)	361, 395
SatI	GCNGC	2 cut(s)	133, 303
Sau96I	GGNCC	4 cut(s)	7, 79, 240, 297
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	5 cut(s)	77, 264, 265, 367, 382
SduI	GDGCHC	2 cut(s)	147, 408
Sfr274I	CTCGAG	1 cut(s)	140
Sfr303I	CCGCGG	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	303
SinI	GGWCC	3 cut(s)	7, 240, 297
SlaI	CTCGAG	1 cut(s)	140
SmaI	CCCGGG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	442
SsiI	CCGC	9 cut(s)	112, 133, 154, 300, 302, 305, 386, 453, 477
SstI	GAGCTC	2 cut(s)	147, 408
StyD4I	CCNGG	5 cut(s)	75, 262, 263, 365, 380
TaaI	ACNGT	2 cut(s)	250, 418
TaiI	ACGT	3 cut(s)	171, 237, 317
TaqI	TCGA	5 cut(s)	141, 177, 210, 362, 396
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	442
TauI	GCSGC	2 cut(s)	135, 305
TseFI	GTSAC	2 cut(s)	268, 412
Tsp45I	GTSAC	2 cut(s)	268, 412
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	386
TspMI	CCCGGG	1 cut(s)	263
VpaK11BI	GGWCC	3 cut(s)	7, 240, 297
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	442
XceI	RCATGY	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	140
XmaI	CCCGGG	1 cut(s)	263
XmiI	GTMKAC	2 cut(s)	362, 396
ZraI	GACGTC	2 cut(s)	169, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.