FvH4_6g50970

Shaggy-related protein kinase epsilon

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37848160 .. 37851991
3832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50970.t1

Sequence Viewer

Length: 1239 bp
ATGGCTTCAGCTGCTCCGGCGGTACCGCCTGCCTCGAGTGTTGAGAATCCGAATGGCAGCAAGGGTAGGTTGGCTGATAAGCTACCGGAGGAGATTAACGAGATGAAGATCAAAGATGAGAAGGAAATAGAAGCAGCTGTGGTGAATGGGAATGGGACTGAAACAGGCCACATTATTGTGACTACGATCGGTGGCCGAAATGGTCAGCCTAAACAGACTGTAAGTTACATGGCAGAGCGTGTTGTTGGGCAGGGCTCATTTGGTATTGTTTTTCAGGCTAAGTGCCTTGAAACTGGAGAAACTGTTGCAATCAAGAAGGTTTTGCAGGACAAGAGATACAAGAATCGTGAGTTGCAAACAATGCGCCTTCTTGATCATCCTAATGTTGTTGCACTCAAGCATTGCTTCTTTTCGACCACGGATAAGGATGAGCTCTATCTTAATCTGGTGCTTGAATATGTACCTGAGACTGTTTATCGTGTGGCAAAGCACTACAGCAAGGCAAATCAACGGATGCCTATGATATATGTCAAACTGTATACTTATCAGATTTGTAGAGCTTTGGCATATATCCACGGAGGCATAGGAGTATGCCACAGGGACATTAAGCCTCAGAATCTCTTGGTTAATCCCCATACTCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTGAAAGGCGAACCAAATATATCATATATTTGTTCACGTTATTATCGAGCACCTGAACTGATATTCGGGGCCACTGAATACACTACTGCCATTGACATCTGGTCTGTGGGTTGTGTGCTTGCTGAACTGCTTCTTGGACAGCCTCTCTTCCCAGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATTAAGGTACTTGGCACCCCAACTCGTGAGGAAATCAAATGCATGAACCCGAATTATACAGAATTCAAGTTTCCACAAATCAAGGCTCACCCTTGGCACAAAATATTCCACAAGCGCACGCCCCCAGAAGCAGTAGATCTTGTGTCAAGACTCCTTCAGTATTCTCCCAGTCTAAGGTGTACTGCTCTTGAGGCTTGTGTCCACCCGTTCTTTGACCAACTCCGTGATCCTACTACTCGTCTCCCTAATGGACGACCTTTGCCTCCTCTCTTCAACTTCAGGCCTCAAGAGCTGAAGGGAGCAACTTCTGAGCTTCTATCCAGACTGATTCCTGATCACACCAGAAAGCAATGTGCCTTTCTAGGTACCTAG

Protein Analysis

413

Amino Acids

46.24

Weight (kDa)

8.81

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 77 - 360 3.3e-62 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 79 - 279 1.8e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012709)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 22, 1232
AccB1I GGYRCC 3 cut(s) 22, 881, 1232
AccI GTMKAC 1 cut(s) 539
AciI CCGC 2 cut(s) 20, 26
AclWI GGATC 1 cut(s) 1088
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 929
AcuI CTGAAG 3 cut(s) 1007, 1129, 1181
AfaI GTAC 5 cut(s) 24, 462, 876, 1048, 1234
AfiI CCNNNNNNNGG 1 cut(s) 1041
AgsI TTSAA 4 cut(s) 290, 455, 934, 1141
AhdI GACNNNNNGTC 1 cut(s) 781
AjnI CCWGG 2 cut(s) 678, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 798, 830
AluBI AGCT 9 cut(s) 11, 82, 137, 433, 560, 652, 856, 1159, 1180
AluI AGCT 9 cut(s) 11, 82, 137, 433, 560, 652, 856, 1159, 1180
Alw21I GWGCWC 2 cut(s) 435, 733
Alw26I GTCTC 2 cut(s) 461, 1112
AlwI GGATC 1 cut(s) 1088
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 4 cut(s) 166, 193, 750, 1148
ApeKI GCWGC 3 cut(s) 11, 57, 134
ApoI RAATTY 1 cut(s) 929
Asp700I GAANNNNTTC 1 cut(s) 810
Asp718I GGTACC 2 cut(s) 22, 1232
AspLEI GCGC 2 cut(s) 366, 984
AspS9I GGNCC 1 cut(s) 750
AsuHPI GGTGA 4 cut(s) 154, 694, 848, 947
AvaI CYCGRG 1 cut(s) 34
BanI GGYRCC 3 cut(s) 22, 881, 1232
BanII GRGCYC 2 cut(s) 257, 435
BauI CACGAG 1 cut(s) 891
Bbv12I GWGCWC 2 cut(s) 435, 733
BbvI GCAGC 2 cut(s) 69, 146
BciT130I CCWGG 2 cut(s) 680, 834
BclI TGATCA 3 cut(s) 373, 850, 1201
BcoDI GTCTC 2 cut(s) 461, 1112
BfaI CTAG 2 cut(s) 1229, 1237
BfmI CTRYAG 1 cut(s) 493
BglII AGATCT 1 cut(s) 1003
BisI GCNGC 3 cut(s) 12, 58, 135
BlsI GCNGC 3 cut(s) 13, 59, 136
Bme1390I CCNGG 2 cut(s) 680, 834
BmeRI GACNNNNNGTC 1 cut(s) 781
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 4 cut(s) 24, 751, 883, 1234
BmrFI CCNGG 2 cut(s) 680, 834
BmrI ACTGGG 1 cut(s) 1029
BmsI GCATC 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 1029
BpmI CTGGAG 1 cut(s) 315
BpuEI CTTGAG 3 cut(s) 380, 1076, 1137
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 417, 574, 832, 959
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 1041
Bse1I ACTGG 2 cut(s) 298, 1035
Bse3DI GCAATG 2 cut(s) 400, 1223
Bse8I GATNNNNATC 1 cut(s) 107
BseBI CCWGG 2 cut(s) 680, 834
BseDI CCNNGG 4 cut(s) 417, 574, 832, 959
BseGI GGATG 3 cut(s) 376, 433, 519
BseJI GATNNNNATC 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 1041
BseMI GCAATG 2 cut(s) 400, 1223
BseMII CTCAG 3 cut(s) 456, 626, 1167
BseNI ACTGG 2 cut(s) 298, 1035
BseRI GAGGAG 2 cut(s) 104, 1122
BseXI GCAGC 2 cut(s) 69, 146
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 4 cut(s) 168, 195, 752, 1150
BshNI GGYRCC 3 cut(s) 22, 881, 1232
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 2 cut(s) 435, 733
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 2 cut(s) 17, 86
BslFI GGGAC 2 cut(s) 169, 614
BslI CCNNNNNNNGG 1 cut(s) 1041
BsmAI GTCTC 2 cut(s) 461, 1112
BsmBI CGTCTC 1 cut(s) 1112
BsmFI GGGAC 2 cut(s) 169, 614
BsnI GGCC 4 cut(s) 168, 195, 752, 1150
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 3 cut(s) 257, 435, 733
Bsp143I GATC 7 cut(s) 108, 186, 373, 850, 1003, 1093, 1201
BspACI CCGC 2 cut(s) 20, 26
BspANI GGCC 4 cut(s) 168, 195, 752, 1150
BspCNI CTCAG 3 cut(s) 457, 625, 1168
BspLI GGNNCC 4 cut(s) 24, 751, 883, 1234
BspPI GGATC 1 cut(s) 1088
BspT107I GGYRCC 3 cut(s) 22, 881, 1232
BsrDI GCAATG 2 cut(s) 400, 1223
BsrI ACTGG 2 cut(s) 298, 1035
BssECI CCNNGG 4 cut(s) 417, 574, 832, 959
BssMI GATC 7 cut(s) 108, 186, 373, 850, 1003, 1093, 1201
BssNAI GTATAC 1 cut(s) 540
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 959
Bst1107I GTATAC 1 cut(s) 540
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 2 cut(s) 680, 834
Bst4CI ACNGT 4 cut(s) 220, 304, 472, 537
Bst6I CTCTTC 2 cut(s) 833, 1142
BstAPI GCANNNNNTGC 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 30, 801, 986
BstDEI CTNAG 5 cut(s) 279, 465, 612, 1040, 1176
BstDSI CCRYGG 2 cut(s) 417, 574
BstF5I GGATG 3 cut(s) 376, 433, 519
BstHHI GCGC 2 cut(s) 366, 984
BstKTI GATC 7 cut(s) 111, 189, 376, 853, 1006, 1096, 1204
BstMAI GTCTC 2 cut(s) 461, 1112
BstMBI GATC 7 cut(s) 108, 186, 373, 850, 1003, 1093, 1201
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 5 cut(s) 11, 17, 361, 1058, 1156
BstNI CCWGG 2 cut(s) 680, 834
BstSCI CCNGG 2 cut(s) 678, 832
BstSFI CTRYAG 1 cut(s) 493
BstV1I GCAGC 2 cut(s) 69, 146
BstX2I RGATCY 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 1003
BstZ17I GTATAC 1 cut(s) 540
BsuRI GGCC 4 cut(s) 168, 195, 752, 1150
BtgI CCRYGG 2 cut(s) 417, 574
BtsCI GGATG 3 cut(s) 376, 433, 519
BtsIMutI CAGTG 1 cut(s) 753
Cac8I GCNNGC 3 cut(s) 30, 801, 986
CfoI GCGC 2 cut(s) 366, 984
Cfr13I GGNCC 1 cut(s) 750
Csp6I GTAC 5 cut(s) 23, 461, 875, 1047, 1233
CviAII CATG 2 cut(s) 229, 910
CviQI GTAC 5 cut(s) 23, 461, 875, 1047, 1233
DdeI CTNAG 5 cut(s) 279, 465, 612, 1040, 1176
DpnI GATC 7 cut(s) 110, 188, 375, 852, 1005, 1095, 1203
DpnII GATC 7 cut(s) 108, 186, 373, 850, 1003, 1093, 1201
DriI GACNNNNNGTC 1 cut(s) 781
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 833, 1142
Eam1105I GACNNNNNGTC 1 cut(s) 781
EarI CTCTTC 2 cut(s) 833, 1142
Ecl136II GAGCTC 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 959
Eco147I AGGCCT 1 cut(s) 1150
Eco24I GRGCYC 2 cut(s) 257, 435
Eco53kI GAGCTC 1 cut(s) 433
Eco57I CTGAAG 3 cut(s) 1007, 1129, 1181
Eco88I CYCGRG 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 929
EcoRII CCWGG 2 cut(s) 678, 832
EcoT14I CCWWGG 1 cut(s) 959
EcoT22I ATGCAT 1 cut(s) 911
EcoT38I GRGCYC 2 cut(s) 257, 435
ErhI CCWWGG 1 cut(s) 959
Esp3I CGTCTC 1 cut(s) 1112
FaeI CATG 2 cut(s) 232, 913
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 2 cut(s) 169, 614
FatI CATG 2 cut(s) 228, 909
FbaI TGATCA 3 cut(s) 373, 850, 1201
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 3 cut(s) 12, 58, 135
FokI GGATG 3 cut(s) 363, 440, 526
FriOI GRGCYC 2 cut(s) 257, 435
Fsp4HI GCNGC 3 cut(s) 12, 58, 135
FspBI CTAG 2 cut(s) 1229, 1237
GlaI GCGC 2 cut(s) 365, 983
GluI GCNGC 3 cut(s) 12, 58, 135
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 4 cut(s) 168, 195, 752, 1150
HapII CCGG 2 cut(s) 17, 86
HhaI GCGC 2 cut(s) 366, 984
Hin1II CATG 2 cut(s) 232, 913
Hin6I GCGC 2 cut(s) 364, 982
HinP1I GCGC 2 cut(s) 364, 982
HinfI GANTC 5 cut(s) 46, 343, 616, 1017, 1195
HpaII CCGG 2 cut(s) 17, 86
HphI GGTGA 4 cut(s) 154, 694, 848, 947
Hpy166II GTNNAC 4 cut(s) 540, 716, 1047, 1069
Hpy188I TCNGA 4 cut(s) 51, 549, 615, 1177
Hpy188III TCNNGA 9 cut(s) 313, 347, 371, 893, 1014, 1055, 1154, 1188, 1199
Hpy8I GTNNAC 4 cut(s) 540, 716, 1047, 1069
HpyAV CCTTC 5 cut(s) 115, 310, 377, 1031, 1156
HpyCH4III ACNGT 4 cut(s) 220, 304, 472, 537
HpyCH4IV ACGT 1 cut(s) 718
HpyCH4V TGCA 6 cut(s) 308, 325, 355, 392, 671, 909
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 17, 361, 1058, 1156
HpyF3I CTNAG 5 cut(s) 279, 465, 612, 1040, 1176
HpySE526I ACGT 1 cut(s) 718
Hsp92II CATG 2 cut(s) 232, 913
HspAI GCGC 2 cut(s) 364, 982
KpnI GGTACC 2 cut(s) 26, 1236
Ksp22I TGATCA 3 cut(s) 373, 850, 1201
Kzo9I GATC 7 cut(s) 108, 186, 373, 850, 1003, 1093, 1201
LmnI GCTCC 2 cut(s) 19, 1166
Lsp1109I GCAGC 2 cut(s) 69, 146
LweI GCATC 1 cut(s) 504
MaeI CTAG 2 cut(s) 1229, 1237
MaeII ACGT 1 cut(s) 718
MaeIII GTNAC 2 cut(s) 178, 224
MalI GATC 7 cut(s) 110, 188, 375, 852, 1005, 1095, 1203
MboI GATC 7 cut(s) 108, 186, 373, 850, 1003, 1093, 1201
MboII GAAGA 3 cut(s) 118, 820, 1129
MflI RGATCY 1 cut(s) 1003
MhlI GDGCHC 3 cut(s) 257, 435, 733
MluCI AATT 2 cut(s) 919, 929
MlyI GAGTC 1 cut(s) 1011
Mph1103I ATGCAT 1 cut(s) 911
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 5 cut(s) 96, 441, 606, 627, 870
MslI CAYNNNNRTG 2 cut(s) 176, 381
MspA1I CMGCKG 2 cut(s) 11, 137
MspI CCGG 2 cut(s) 17, 86
MspR9I CCNGG 2 cut(s) 680, 834
MvaI CCWGG 2 cut(s) 680, 834
MwoI GCNNNNNNNGC 5 cut(s) 11, 17, 361, 1058, 1156
NdeII GATC 7 cut(s) 108, 186, 373, 850, 1003, 1093, 1201
NlaIII CATG 2 cut(s) 232, 913
NlaIV GGNNCC 4 cut(s) 24, 751, 883, 1234
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 911
PaeR7I CTCGAG 1 cut(s) 34
PceI AGGCCT 1 cut(s) 1150
PcsI WCGNNNNNNNCGW 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 4 cut(s) 46, 343, 616, 1195
PkrI GCNGC 3 cut(s) 13, 59, 136
Ple19I CGATCG 1 cut(s) 189
PleI GAGTC 1 cut(s) 1011
PpsI GAGTC 1 cut(s) 1011
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 678, 832
PspGI CCWGG 2 cut(s) 678, 832
PspN4I GGNNCC 4 cut(s) 24, 751, 883, 1234
PspPI GGNCC 1 cut(s) 750
PspXI VCTCGAGB 1 cut(s) 34
PsuI RGATCY 1 cut(s) 1003
PvuI CGATCG 1 cut(s) 189
PvuII CAGCTG 2 cut(s) 11, 137
RsaI GTAC 5 cut(s) 24, 462, 876, 1048, 1234
RsaNI GTAC 5 cut(s) 23, 461, 875, 1047, 1233
RseI CAYNNNNRTG 2 cut(s) 176, 381
SacI GAGCTC 1 cut(s) 435
SaqAI TTAA 5 cut(s) 96, 441, 606, 627, 870
SatI GCNGC 3 cut(s) 12, 58, 135
Sau3AI GATC 7 cut(s) 108, 186, 373, 850, 1003, 1093, 1201
Sau96I GGNCC 1 cut(s) 750
SchI GAGTC 1 cut(s) 1011
ScrFI CCNGG 2 cut(s) 680, 834
SduI GDGCHC 3 cut(s) 257, 435, 733
SfaNI GCATC 1 cut(s) 504
SfcI CTRYAG 1 cut(s) 493
Sfr274I CTCGAG 1 cut(s) 34
SlaI CTCGAG 1 cut(s) 34
SmiMI CAYNNNNRTG 2 cut(s) 176, 381
SmlI CTYRAG 4 cut(s) 34, 395, 1055, 1152
SmoI CTYRAG 4 cut(s) 34, 395, 1055, 1152
Sse9I AATT 2 cut(s) 919, 929
SseBI AGGCCT 1 cut(s) 1150
SsiI CCGC 2 cut(s) 20, 26
SspI AATATT 1 cut(s) 972
SspMI CTAG 2 cut(s) 1229, 1237
SstI GAGCTC 1 cut(s) 435
StuI AGGCCT 1 cut(s) 1150
StyD4I CCNGG 2 cut(s) 678, 832
StyI CCWWGG 1 cut(s) 959
TaaI ACNGT 4 cut(s) 220, 304, 472, 537
TaiI ACGT 1 cut(s) 721
TaqI TCGA 3 cut(s) 35, 413, 727
TasI AATT 2 cut(s) 919, 929
TatI WGTACW 1 cut(s) 1046
TfiI GAWTC 4 cut(s) 46, 343, 616, 1195
Tru1I TTAA 5 cut(s) 96, 441, 606, 627, 870
Tru9I TTAA 5 cut(s) 96, 441, 606, 627, 870
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 11, 57, 134
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 119, 926
TspGWI ACGGA 4 cut(s) 434, 526, 591, 1079
TspRI CASTG 1 cut(s) 760
XapI RAATTY 1 cut(s) 929
XhoI CTCGAG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 2 cut(s) 1229, 1237
Zsp2I ATGCAT 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.