Prupe.3G287300_v2.0.a1

Shaggy-related protein kinase epsilon

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
25924122 .. 25927913
3792 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G287300.2

Sequence Viewer

Length: 1230 bp
ATGGCTTCAGCTGGTACAGCAGCTGCTCCGGCTGCTGAAAATCCTAGTGGCAACACAAAGTTTGCTGATAAGCTCCCAGAGGAAATTAATGAAATGAAGATCAAAGATGAGAAGGAAATGGAAACAGCTGTGGTGAATGGCAATGGAACTGAAACTGGCCACATTATTGTAACTACGATCGGGGGTCGAAATGGTCAGCCTAAACAGACCATAAGTTACATGGCAGAGCGTGTTGTTGGGCAAGGGTCATTTGGTATTGTATTTCAGGCTAAATGCCTAGAAACTGGAGAAACTGTTGCAATCAAGAAGGTTTTGCAGGACAAGAGATACAAGAACCGAGAGTTGCAAACAATGCGTCTGCTTGACCATCCTAATGTTGTGTCACTCAAACATTGTTTCTTTTCAACCACGGATAAGGATGAGCTCTATCTGAATCTTGTGCTTGAATATGTACCTGAGACTGTTTATCGTGTGTCAAAACACTATAGCAAAGCCAATCAGCGGATGCCTCTGATATATGTCAAACTCTATACATATCAGATTTGTAGAGCTCTGGCATATATTCATGGAGGGATAGGTGTATGCCACAGAGACATTAAGCCGCAGAATCTCTTGGTTAATCCCCATACTCATCAGGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTCAAAGGCGAGCCAAATATATCATATATTTGTTCTCGTTATTATCGAGCACCTGAGCTTATATTTGGGGCAACTGAATACACTACTGCCATTGACATATGGTCTGTGGGTTGTGTTCTTGCTGAACTGCTTCTTGGACAGCCCCTGTTCCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATTATTAAGGTACTGGGAACGCCAACTCGTGAGGAAATCAAATGTATGAACCCGAATTATACAGAATTCAAATTCCCACAAATCAAGGCTCACCCTTGGCACAAAATATTCCACAAGCGCATGCCCCCAGAAGCAGTAGATCTTGTGTCAAGACTACTTCAGTATTCTCCAAGTCTAAGATGCACTGCTCTCGAGGCCTGTGTCCACCCATTTTTTGATCAACTCCGTGATCCTAATGCTCGTCTCCCTAATGGGCGCCCTTTGCCTCCTCTATTCAACTTCAAGCCTCAAGAGCTGAAGGGAGCAACTTTTGAGCTTCTGTCCAGACTGATACCTGAGCATGCCCGAAAACAATGTGCTTTTCTAGGTATCTAG

Protein Analysis

410

Amino Acids

46.01

Weight (kDa)

8.72

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012709)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1110
AciI CCGC 2 cut(s) 502, 602
AclWI GGATC 1 cut(s) 1079
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 2 cut(s) 920, 926
AcuI CTGAAG 2 cut(s) 998, 1172
AcyI GRCGYC 1 cut(s) 1111
AfaI GTAC 3 cut(s) 16, 453, 867
AfiI CCNNNNNNNGG 1 cut(s) 501
AgsI TTSAA 5 cut(s) 405, 446, 925, 1132, 1138
AhdI GACNNNNNGTC 1 cut(s) 772
AjnI CCWGG 2 cut(s) 669, 823
AjuI GAANNNNNNNTTGG 2 cut(s) 789, 821
Alw21I GWGCWC 3 cut(s) 426, 553, 724
Alw26I GTCTC 3 cut(s) 452, 585, 1103
AlwI GGATC 1 cut(s) 1079
AlwNI CAGNNNCTG 2 cut(s) 23, 817
Ama87I CYCGRG 1 cut(s) 1046
AoxI GGCC 2 cut(s) 157, 1050
ApeKI GCWGC 3 cut(s) 20, 23, 32
ApoI RAATTY 2 cut(s) 920, 926
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AseI ATTAAT 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 801
AspLEI GCGC 2 cut(s) 975, 1113
AsuHPI GGTGA 3 cut(s) 145, 839, 938
AvaI CYCGRG 1 cut(s) 1046
BalI TGGCCA 1 cut(s) 159
BanI GGYRCC 1 cut(s) 1110
BanII GRGCYC 2 cut(s) 426, 553
BauI CACGAG 1 cut(s) 882
Bbv12I GWGCWC 3 cut(s) 426, 553, 724
BbvI GCAGC 3 cut(s) 10, 19, 32
BccI CCATC 1 cut(s) 375
BcgI CGANNNNNNTGC 2 cut(s) 1027, 1061
BciT130I CCWGG 2 cut(s) 671, 825
BclI TGATCA 2 cut(s) 841, 1072
BcoDI GTCTC 3 cut(s) 452, 585, 1103
BfaI CTAG 4 cut(s) 45, 278, 1220, 1228
BfmI CTRYAG 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 1114
BglII AGATCT 1 cut(s) 994
BisI GCNGC 4 cut(s) 21, 24, 33, 602
BlsI GCNGC 4 cut(s) 22, 25, 34, 603
Bme1390I CCNGG 2 cut(s) 671, 825
BmeRI GACNNNNNGTC 1 cut(s) 772
BmeT110I CYCGRG 1 cut(s) 1046
BmiI GGNNCC 1 cut(s) 1112
BmrFI CCNGG 2 cut(s) 671, 825
BmrI ACTGGG 1 cut(s) 878
BmsI GCATC 2 cut(s) 495, 1025
BmuI ACTGGG 1 cut(s) 878
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 2 cut(s) 726, 1191
BpuEI CTTGAG 1 cut(s) 1128
BsaHI GRCGYC 1 cut(s) 1111
BsaJI CCNNGG 3 cut(s) 408, 823, 950
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 501
Bse1I ACTGG 3 cut(s) 160, 289, 873
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 2 cut(s) 671, 825
BseDI CCNNGG 3 cut(s) 408, 823, 950
BseGI GGATG 3 cut(s) 367, 424, 510
BseLI CCNNNNNNNGG 1 cut(s) 501
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 3 cut(s) 447, 717, 1182
BseNI ACTGG 3 cut(s) 160, 289, 873
BseRI GAGGAG 1 cut(s) 1113
BseXI GCAGC 3 cut(s) 10, 19, 32
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 159, 1052
BshNI GGYRCC 1 cut(s) 1110
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 3 cut(s) 426, 553, 724
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 501
BsmAI GTCTC 3 cut(s) 452, 585, 1103
BsmBI CGTCTC 1 cut(s) 1103
BsnI GGCC 2 cut(s) 159, 1052
BsoBI CYCGRG 1 cut(s) 1046
Bsp1286I GDGCHC 3 cut(s) 426, 553, 724
Bsp143I GATC 6 cut(s) 99, 177, 841, 994, 1072, 1084
BspACI CCGC 2 cut(s) 502, 602
BspANI GGCC 2 cut(s) 159, 1052
BspCNI CTCAG 3 cut(s) 448, 718, 1183
BspLI GGNNCC 1 cut(s) 1112
BspPI GGATC 1 cut(s) 1079
BspT107I GGYRCC 1 cut(s) 1110
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 3 cut(s) 160, 289, 873
BssECI CCNNGG 3 cut(s) 408, 823, 950
BssMI GATC 6 cut(s) 99, 177, 841, 994, 1072, 1084
BssNI GRCGYC 1 cut(s) 1111
BssSI CACGAG 1 cut(s) 882
BssT1I CCWWGG 1 cut(s) 950
Bst2BI CACGAG 1 cut(s) 882
Bst2UI CCWGG 2 cut(s) 671, 825
Bst4CI ACNGT 2 cut(s) 295, 463
BstACI GRCGYC 1 cut(s) 1111
BstAPI GCANNNNNTGC 1 cut(s) 352
BstC8I GCNNGC 3 cut(s) 683, 977, 1197
BstDEI CTNAG 4 cut(s) 456, 726, 1031, 1191
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 3 cut(s) 367, 424, 510
BstH2I RGCGCY 1 cut(s) 1114
BstHHI GCGC 2 cut(s) 975, 1113
BstKTI GATC 6 cut(s) 102, 180, 844, 997, 1075, 1087
BstMAI GTCTC 3 cut(s) 452, 585, 1103
BstMBI GATC 6 cut(s) 99, 177, 841, 994, 1072, 1084
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 7 cut(s) 17, 29, 32, 352, 1049, 1117, 1147
BstNI CCWGG 2 cut(s) 671, 825
BstNSI RCATGY 2 cut(s) 979, 1199
BstSCI CCNGG 2 cut(s) 669, 823
BstSFI CTRYAG 1 cut(s) 484
BstV1I GCAGC 3 cut(s) 10, 19, 32
BstX2I RGATCY 1 cut(s) 994
BstYI RGATCY 1 cut(s) 994
BsuRI GGCC 2 cut(s) 159, 1052
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 3 cut(s) 367, 424, 510
BtsI GCAGTG 1 cut(s) 1038
BtsIMutI CAGTG 1 cut(s) 1038
Cac8I GCNNGC 3 cut(s) 683, 977, 1197
CaiI CAGNNNCTG 2 cut(s) 23, 817
CfoI GCGC 2 cut(s) 975, 1113
CseI GACGC 1 cut(s) 344
Csp6I GTAC 3 cut(s) 15, 452, 866
CviAII CATG 4 cut(s) 220, 566, 976, 1196
CviQI GTAC 3 cut(s) 15, 452, 866
DdeI CTNAG 4 cut(s) 456, 726, 1031, 1191
DinI GGCGCC 1 cut(s) 1112
DpnI GATC 6 cut(s) 101, 179, 843, 996, 1074, 1086
DpnII GATC 6 cut(s) 99, 177, 841, 994, 1072, 1084
DriI GACNNNNNGTC 1 cut(s) 772
EaeI YGGCCR 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 772
Ecl136II GAGCTC 2 cut(s) 424, 551
Eco130I CCWWGG 1 cut(s) 950
Eco147I AGGCCT 1 cut(s) 1052
Eco24I GRGCYC 2 cut(s) 426, 553
Eco53kI GAGCTC 2 cut(s) 424, 551
Eco57I CTGAAG 2 cut(s) 998, 1172
Eco88I CYCGRG 1 cut(s) 1046
EcoICRI GAGCTC 2 cut(s) 424, 551
EcoRI GAATTC 1 cut(s) 920
EcoRII CCWGG 2 cut(s) 669, 823
EcoT14I CCWWGG 1 cut(s) 950
EcoT38I GRGCYC 2 cut(s) 426, 553
EgeI GGCGCC 1 cut(s) 1112
EheI GGCGCC 1 cut(s) 1112
ErhI CCWWGG 1 cut(s) 950
Esp3I CGTCTC 1 cut(s) 1103
FaeI CATG 4 cut(s) 223, 569, 979, 1199
FatI CATG 4 cut(s) 219, 565, 975, 1195
FauNDI CATATG 1 cut(s) 770
FbaI TGATCA 2 cut(s) 841, 1072
Fnu4HI GCNGC 4 cut(s) 21, 24, 33, 602
FokI GGATG 3 cut(s) 354, 431, 517
FriOI GRGCYC 2 cut(s) 426, 553
Fsp4HI GCNGC 4 cut(s) 21, 24, 33, 602
FspBI CTAG 4 cut(s) 45, 278, 1220, 1228
GlaI GCGC 2 cut(s) 974, 1112
GluI GCNGC 4 cut(s) 21, 24, 33, 602
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 1114
HaeIII GGCC 2 cut(s) 159, 1052
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 344
HhaI GCGC 2 cut(s) 975, 1113
Hin1I GRCGYC 1 cut(s) 1111
Hin1II CATG 4 cut(s) 223, 569, 979, 1199
Hin6I GCGC 2 cut(s) 973, 1111
HinP1I GCGC 2 cut(s) 973, 1111
HinfI GANTC 2 cut(s) 433, 607
HpaII CCGG 1 cut(s) 29
HphI GGTGA 3 cut(s) 145, 839, 938
Hpy166II GTNNAC 1 cut(s) 1060
Hpy188I TCNGA 3 cut(s) 432, 513, 540
Hpy188III TCNNGA 6 cut(s) 304, 884, 1005, 1046, 1145, 1179
Hpy8I GTNNAC 1 cut(s) 1060
HpyAV CCTTC 3 cut(s) 106, 301, 1147
HpyCH4III ACNGT 2 cut(s) 295, 463
HpyCH4V TGCA 5 cut(s) 299, 316, 346, 662, 1038
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 29, 32, 352, 1049, 1117, 1147
HpyF3I CTNAG 4 cut(s) 456, 726, 1031, 1191
Hsp92I GRCGYC 1 cut(s) 1111
Hsp92II CATG 4 cut(s) 223, 569, 979, 1199
HspAI GCGC 2 cut(s) 973, 1111
KasI GGCGCC 1 cut(s) 1110
Ksp22I TGATCA 2 cut(s) 841, 1072
Kzo9I GATC 6 cut(s) 99, 177, 841, 994, 1072, 1084
LmnI GCTCC 3 cut(s) 31, 78, 1157
Lsp1109I GCAGC 3 cut(s) 10, 19, 32
LweI GCATC 2 cut(s) 495, 1025
MaeI CTAG 4 cut(s) 45, 278, 1220, 1228
MaeIII GTNAC 3 cut(s) 169, 215, 381
MalI GATC 6 cut(s) 101, 179, 843, 996, 1074, 1086
MboI GATC 6 cut(s) 99, 177, 841, 994, 1072, 1084
MboII GAAGA 1 cut(s) 109
MflI RGATCY 1 cut(s) 994
MhlI GDGCHC 3 cut(s) 426, 553, 724
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 4 cut(s) 84, 910, 920, 926
MluNI TGGCCA 1 cut(s) 159
Mly113I GGCGCC 1 cut(s) 1111
MnlI CCTC 8 cut(s) 73, 519, 563, 880, 1042, 1131, 1134, 1152
Mox20I TGGCCA 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 801
MscI TGGCCA 1 cut(s) 159
MseI TTAA 5 cut(s) 87, 597, 618, 639, 861
MslI CAYNNNNRTG 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 159
MspA1I CMGCKG 4 cut(s) 11, 23, 128, 502
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 671, 825
MvaI CCWGG 2 cut(s) 671, 825
MwoI GCNNNNNNNGC 7 cut(s) 17, 29, 32, 352, 1049, 1117, 1147
NarI GGCGCC 1 cut(s) 1111
NdeI CATATG 1 cut(s) 770
NdeII GATC 6 cut(s) 99, 177, 841, 994, 1072, 1084
NlaIII CATG 4 cut(s) 223, 569, 979, 1199
NlaIV GGNNCC 1 cut(s) 1112
NmuCI GTSAC 1 cut(s) 381
NspI RCATGY 2 cut(s) 979, 1199
PaeI GCATGC 2 cut(s) 979, 1199
PaeR7I CTCGAG 1 cut(s) 1046
PceI AGGCCT 1 cut(s) 1052
PcsI WCGNNNNNNNCGW 1 cut(s) 715
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 433, 607
PkrI GCNGC 4 cut(s) 22, 25, 34, 603
Ple19I CGATCG 1 cut(s) 180
PluTI GGCGCC 1 cut(s) 1114
PshBI ATTAAT 1 cut(s) 87
Psp124BI GAGCTC 2 cut(s) 426, 553
Psp6I CCWGG 2 cut(s) 669, 823
PspGI CCWGG 2 cut(s) 669, 823
PspN4I GGNNCC 1 cut(s) 1112
PstNI CAGNNNCTG 2 cut(s) 23, 817
PsuI RGATCY 1 cut(s) 994
PvuI CGATCG 1 cut(s) 180
PvuII CAGCTG 3 cut(s) 11, 23, 128
RsaI GTAC 3 cut(s) 16, 453, 867
RsaNI GTAC 3 cut(s) 15, 452, 866
RseI CAYNNNNRTG 1 cut(s) 372
SacI GAGCTC 2 cut(s) 426, 553
SaqAI TTAA 5 cut(s) 87, 597, 618, 639, 861
SatI GCNGC 4 cut(s) 21, 24, 33, 602
Sau3AI GATC 6 cut(s) 99, 177, 841, 994, 1072, 1084
ScrFI CCNGG 2 cut(s) 671, 825
SduI GDGCHC 3 cut(s) 426, 553, 724
SfaNI GCATC 2 cut(s) 495, 1025
SfcI CTRYAG 1 cut(s) 484
SfoI GGCGCC 1 cut(s) 1112
Sfr274I CTCGAG 1 cut(s) 1046
SlaI CTCGAG 1 cut(s) 1046
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 1046, 1143
SmoI CTYRAG 2 cut(s) 1046, 1143
SphI GCATGC 2 cut(s) 979, 1199
Sse9I AATT 4 cut(s) 84, 910, 920, 926
SseBI AGGCCT 1 cut(s) 1052
SsiI CCGC 2 cut(s) 502, 602
SspDI GGCGCC 1 cut(s) 1110
SspI AATATT 1 cut(s) 963
SspMI CTAG 4 cut(s) 45, 278, 1220, 1228
SstI GAGCTC 2 cut(s) 426, 553
StuI AGGCCT 1 cut(s) 1052
StyD4I CCNGG 2 cut(s) 669, 823
StyI CCWWGG 1 cut(s) 950
TaaI ACNGT 2 cut(s) 295, 463
TaqI TCGA 3 cut(s) 187, 718, 1047
TasI AATT 4 cut(s) 84, 910, 920, 926
TauI GCSGC 1 cut(s) 604
TfiI GAWTC 2 cut(s) 433, 607
Tru1I TTAA 5 cut(s) 87, 597, 618, 639, 861
Tru9I TTAA 5 cut(s) 87, 597, 618, 639, 861
TscAI CASTG 1 cut(s) 1045
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 3 cut(s) 20, 23, 32
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 4 cut(s) 105, 110, 554, 917
TspGWI ACGGA 2 cut(s) 425, 1070
TspRI CASTG 1 cut(s) 1045
VspI ATTAAT 1 cut(s) 87
XapI RAATTY 2 cut(s) 920, 926
XceI RCATGY 2 cut(s) 979, 1199
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XhoI CTCGAG 1 cut(s) 1046
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 4 cut(s) 45, 278, 1220, 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.