Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009157

Physical Location & Seq

Genomic Coordinates Forward (+)

68474175 .. 68485093

Gene Structure 10919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0558800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGATAAGATGAGCTACAACGCCGGTGTGGCCAAGGGCCAAACTCAGGAGAAGGCCAGCACCATGATGGACAAGGCCGGGAATGTTGCACAGTCCACCAAGGAATCGATACAGAATGCTGGCCAAGTGGATAACTCGCAGAAGATGAGCTACCACGCTGGGGAGGCCAAGGGCCAAACTCAGGAGAAGGCCAGCACCATGATGGACAAGGCCGGGAATGTTGGACAGTACGCCAAGGAATCGATGCAGAATGCTGGCCAAGCTATTCAGAAAACGGCTGCGGGAGCTGCTGACGCCGTCAAGAATGCTACTGGCATGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

108

Amino Acids

11.27

Weight (kDa)

9.16

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14650 AT5G14650
fragaria_vesca	FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960
malus_domestica	MD09G1030100.v1.1 MD09G1030200.v1.1 MD17G1032000.v1.1
prunus_persica	Prupe.3G287200_v2.0.a1
pyrus_communis	pycom111g02420
rosa_chinensis	RchiOBHm_Chr2g0172361
rosa_laevigata	RLG00000022107
rosa_multiflora	Rmu_sc0000467.1_g000009
rosa_roxburghii	Rroxscaffold_2G00079950
rosa_rugosa	Rorug02G0558800
rosa_samantha	Rh2AG633800 Rh2BG647600 Rh2CG614600 Rh2DG662400
rosa_wichuraiana	Rw2G052500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	281
AcoI	YGGCCR	3 cut(s)	30, 121, 256
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	3 cut(s)	46, 160, 181
AluBI	AGCT	4 cut(s)	15, 150, 263, 287
AluI	AGCT	4 cut(s)	15, 150, 263, 287
ApeKI	GCWGC	2 cut(s)	278, 287
AspS9I	GGNCC	2 cut(s)	37, 172
AsuC2I	CCSGG	2 cut(s)	79, 214
BalI	TGGCCA	3 cut(s)	32, 123, 258
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbvI	GCAGC	2 cut(s)	265, 274
BccI	CCATC	2 cut(s)	61, 196
BceAI	ACGGC	2 cut(s)	281, 291
BcnI	CCSGG	2 cut(s)	79, 214
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	279, 288
BlsI	GCNGC	2 cut(s)	280, 289
Bme1390I	CCNGG	2 cut(s)	79, 214
BmgT120I	GGNCC	2 cut(s)	37, 172
BmrFI	CCNGG	2 cut(s)	79, 214
BmsI	GCATC	1 cut(s)	234
BpuMI	CCSGG	2 cut(s)	79, 214
Bsa29I	ATCGAT	2 cut(s)	107, 242
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	33, 99, 168, 234
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 160, 181
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	316
BseCI	ATCGAT	2 cut(s)	107, 242
BseDI	CCNNGG	4 cut(s)	33, 99, 168, 234
BseLI	CCNNNNNNNGG	3 cut(s)	46, 160, 181
BseMII	CTCAG	2 cut(s)	59, 194
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	265, 274
BseYI	CCCAGC	1 cut(s)	158
BshVI	ATCGAT	2 cut(s)	107, 242
BsiSI	CCGG	3 cut(s)	24, 78, 213
BslI	CCNNNNNNNGG	3 cut(s)	46, 160, 181
BsmI	GAATGC	3 cut(s)	121, 256, 310
BspACI	CCGC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	58, 193
BspDI	ATCGAT	2 cut(s)	107, 242
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	33, 99, 168, 234
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	4 cut(s)	33, 99, 168, 234
Bst4CI	ACNGT	2 cut(s)	93, 228
BstACI	GRCGYC	1 cut(s)	294
BstC8I	GCNNGC	4 cut(s)	58, 121, 193, 256
BstDEI	CTNAG	2 cut(s)	45, 180
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 164, 260, 284, 287, 293
BstSCI	CCNGG	2 cut(s)	77, 212
BstV1I	GCAGC	2 cut(s)	265, 274
Bsu15I	ATCGAT	2 cut(s)	107, 242
BsuTUI	ATCGAT	2 cut(s)	107, 242
Cac8I	GCNNGC	4 cut(s)	58, 121, 193, 256
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	37, 172
ClaI	ATCGAT	2 cut(s)	107, 242
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	64, 199, 316
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	45, 180
EaeI	YGGCCR	3 cut(s)	30, 121, 256
Eco130I	CCWWGG	4 cut(s)	33, 99, 168, 234
EcoT14I	CCWWGG	4 cut(s)	33, 99, 168, 234
ErhI	CCWWGG	4 cut(s)	33, 99, 168, 234
FaeI	CATG	3 cut(s)	67, 202, 319
FaiI	YATR	3 cut(s)	65, 200, 317
FatI	CATG	3 cut(s)	63, 198, 315
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	279, 288
Fsp4HI	GCNGC	2 cut(s)	279, 288
GluI	GCNGC	2 cut(s)	279, 288
GsaI	CCCAGC	1 cut(s)	162
HapII	CCGG	3 cut(s)	24, 78, 213
HgaI	GACGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	67, 202, 319
HinfI	GANTC	2 cut(s)	104, 239
HpaII	CCGG	3 cut(s)	24, 78, 213
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	3 cut(s)	47, 182, 301
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	2 cut(s)	46, 181
HpyCH4III	ACNGT	2 cut(s)	93, 228
HpyCH4V	TGCA	2 cut(s)	89, 247
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 164, 260, 284, 287, 293
HpyF3I	CTNAG	2 cut(s)	45, 180
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	67, 202, 319
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	2 cut(s)	265, 274
LweI	GCATC	1 cut(s)	234
MboII	GAAGA	1 cut(s)	154
MlsI	TGGCCA	3 cut(s)	32, 123, 258
MluNI	TGGCCA	3 cut(s)	32, 123, 258
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	1 cut(s)	157
Mox20I	TGGCCA	3 cut(s)	32, 123, 258
MscI	TGGCCA	3 cut(s)	32, 123, 258
MslI	CAYNNNNRTG	2 cut(s)	65, 200
Msp20I	TGGCCA	3 cut(s)	32, 123, 258
MspI	CCGG	3 cut(s)	24, 78, 213
MspR9I	CCNGG	2 cut(s)	79, 214
Mva1269I	GAATGC	3 cut(s)	121, 256, 310
MwoI	GCNNNNNNNGC	6 cut(s)	29, 164, 260, 284, 287, 293
NciI	CCSGG	2 cut(s)	79, 214
NlaIII	CATG	3 cut(s)	67, 202, 319
PctI	GAATGC	3 cut(s)	121, 256, 310
PfeI	GAWTC	2 cut(s)	104, 239
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	280, 289
PspFI	CCCAGC	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	37, 172
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	2 cut(s)	65, 200
SatI	GCNGC	2 cut(s)	279, 288
Sau96I	GGNCC	2 cut(s)	37, 172
ScrFI	CCNGG	2 cut(s)	79, 214
SetI	ASST	4 cut(s)	17, 152, 265, 289
SfaNI	GCATC	1 cut(s)	234
SgrAI	CRCCGGYG	1 cut(s)	23
SmiMI	CAYNNNNRTG	2 cut(s)	65, 200
SsiI	CCGC	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	77, 212
StyI	CCWWGG	4 cut(s)	33, 99, 168, 234
TaaI	ACNGT	2 cut(s)	93, 228
TaqI	TCGA	2 cut(s)	107, 242
TfiI	GAWTC	2 cut(s)	104, 239
TseI	GCWGC	2 cut(s)	278, 287
Tth111I	GACNNNGTC	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	2 cut(s)	64, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.